Wall clock time and date at job start Sat Mar 6 2021 19:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47082 * 2 1 4 4 C 1.53002 * 109.46910 * 173.61490 * 3 2 1 5 5 C 1.53004 * 109.47371 * 293.61077 * 3 2 1 6 6 C 1.50700 * 109.46711 * 66.80862 * 5 3 2 7 7 O 1.21283 * 119.99835 * 232.79860 * 6 5 3 8 8 N 1.34776 * 120.00058 * 52.80400 * 6 5 3 9 9 C 1.46498 * 119.99893 * 174.99667 * 8 6 5 10 10 H 1.09000 * 112.90953 * 23.75057 * 9 8 6 11 11 C 1.53778 * 113.61271 * 155.00015 * 9 8 6 12 12 C 1.53786 * 87.08276 * 139.98497 * 11 9 8 13 13 H 1.08997 * 113.61696 * 220.02594 * 12 11 9 14 14 O 1.42894 * 113.61703 * 89.11519 * 12 11 9 15 15 C 1.53782 * 87.07962 * 334.56840 * 12 11 9 16 16 N 1.46500 * 109.46919 * 306.81350 * 5 3 2 17 17 C 1.36344 * 125.64027 * 68.85757 * 16 5 3 18 18 C 1.34851 * 108.22079 * 180.02562 * 17 16 5 19 19 C 1.40892 * 107.41745 * 359.97438 * 18 17 16 20 20 C 1.34856 * 107.41499 * 359.73428 * 19 18 17 21 21 C 1.50703 * 125.89006 * 180.25888 * 20 19 18 22 22 O 1.42895 * 109.47198 * 150.20556 * 21 20 19 23 23 Si 1.86293 * 109.47297 * 30.19732 * 21 20 19 24 24 H 1.08996 * 109.47154 * 313.93662 * 1 2 3 25 25 H 1.09003 * 109.47056 * 73.93503 * 1 2 3 26 26 H 1.08996 * 109.47168 * 193.93816 * 1 2 3 27 27 H 1.08999 * 109.46882 * 239.99530 * 2 1 3 28 28 H 1.08999 * 109.47067 * 120.00047 * 2 1 3 29 29 H 1.08993 * 109.47524 * 53.61382 * 3 2 1 30 30 H 1.09004 * 109.47154 * 184.73827 * 4 3 2 31 31 H 1.08996 * 109.47106 * 304.73475 * 4 3 2 32 32 H 1.09001 * 109.47276 * 64.73591 * 4 3 2 33 33 H 1.08996 * 109.47498 * 186.81322 * 5 3 2 34 34 H 0.96992 * 119.99837 * 355.00138 * 8 6 5 35 35 H 1.09001 * 113.61570 * 254.52828 * 11 9 8 36 36 H 1.08993 * 113.61705 * 25.43584 * 11 9 8 37 37 H 0.96703 * 114.00462 * 180.02562 * 14 12 11 38 38 H 1.09004 * 113.61533 * 270.89013 * 15 12 11 39 39 H 1.08990 * 113.61717 * 139.97978 * 15 12 11 40 40 H 1.07995 * 125.88770 * 0.02562 * 17 16 5 41 41 H 1.07996 * 126.28982 * 179.97438 * 18 17 16 42 42 H 1.07999 * 126.29238 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.46562 * 270.20349 * 21 20 19 44 44 H 0.96701 * 114.00237 * 180.02562 * 22 21 20 45 45 H 1.48501 * 109.99878 * 60.00341 * 23 21 20 46 46 H 1.48497 * 110.00424 * 181.31937 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5616 1.4454 0.1604 5 6 1.6653 2.1159 -1.3218 6 6 0.1677 2.2634 -1.4034 7 8 -0.4306 1.8473 -2.3729 8 7 -0.5066 2.8578 -0.3993 9 6 -1.9459 3.0999 -0.5261 10 1 -2.4283 2.4278 -1.2356 11 6 -2.6755 3.1971 0.8241 12 6 -3.4933 4.3458 0.2104 13 1 -3.6715 5.1715 0.8992 14 8 -4.6803 3.9111 -0.4559 15 6 -2.3054 4.5801 -0.7377 16 7 2.1367 1.2943 -2.4393 17 6 1.6425 0.0734 -2.7916 18 6 2.3301 -0.3660 -3.8652 19 6 3.2834 0.6199 -4.1879 20 6 3.1380 1.6269 -3.3028 21 6 3.9462 2.8985 -3.2707 22 8 3.1479 3.9570 -2.7374 23 14 4.4838 3.3365 -4.9998 24 1 -0.3633 0.7130 0.7400 25 1 -0.3633 0.2844 -0.9876 26 1 -0.3633 -0.9974 0.2475 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5864 1.9882 0.8272 30 1 3.9160 2.4727 0.2449 31 1 3.8332 0.8923 1.0595 32 1 4.0195 0.9733 -0.7088 33 1 2.1307 3.1002 -1.3728 34 1 -0.0390 3.1253 0.4073 35 1 -3.2712 2.3161 1.0629 36 1 -2.0322 3.5100 1.6465 37 1 -5.1988 4.6291 -0.8443 38 1 -1.5608 5.2710 -0.3422 39 1 -2.6022 4.8155 -1.7596 40 1 0.8389 -0.4513 -2.2963 41 1 2.1780 -1.3017 -4.3825 42 1 3.9961 0.5791 -4.9983 43 1 4.8253 2.7545 -2.6425 44 1 3.6050 4.8077 -2.6876 45 1 3.2943 3.5354 -5.8664 46 1 5.3084 4.5713 -4.9780 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_12360566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:57 Heat of formation + Delta-G solvation = -19.965741 kcal Electronic energy + Delta-G solvation = -28209.141405 eV Core-core repulsion = 24489.125995 eV Total energy + Delta-G solvation = -3720.015411 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84825 -41.14609 -39.76121 -37.94551 -37.47252 -36.29861 -33.79835 -32.98328 -31.51304 -30.67652 -28.31998 -26.90590 -25.86510 -25.26254 -24.52516 -22.21011 -21.65794 -21.33976 -21.08427 -19.89253 -18.83085 -18.52131 -18.31230 -17.61253 -17.13991 -16.79446 -16.37662 -16.16181 -15.53302 -15.35630 -15.01305 -14.88081 -14.56521 -14.47906 -14.31829 -14.14025 -13.85798 -13.67224 -13.58432 -13.50652 -13.21719 -13.09265 -13.01045 -12.78998 -12.65229 -12.40518 -12.32224 -12.07363 -11.92066 -11.68193 -11.56015 -11.48352 -11.00713 -10.85646 -10.60562 -10.04198 -9.31634 -8.61753 -4.89691 1.09177 1.50980 1.54803 1.67060 1.89289 2.06431 2.33564 2.37459 2.91922 3.00727 3.32547 3.40062 3.56657 3.58143 3.65863 3.71666 3.81266 3.97266 4.01074 4.26175 4.29975 4.38243 4.40834 4.44060 4.47017 4.49411 4.56124 4.63358 4.68158 4.77738 4.83080 4.83747 4.89541 4.94412 4.95960 5.03779 5.06863 5.12872 5.20777 5.35132 5.45304 5.55369 5.60022 6.17531 6.33045 6.35305 6.50682 6.56522 6.62302 7.14757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C -0.097 4.097 4 C -0.147 4.147 5 C 0.110 3.890 6 C 0.520 3.480 7 O -0.520 6.520 8 N -0.720 5.720 9 C 0.131 3.869 10 H 0.121 0.879 11 C -0.140 4.140 12 C 0.082 3.918 13 H 0.076 0.924 14 O -0.550 6.550 15 C -0.186 4.186 16 N -0.409 5.409 17 C 0.016 3.984 18 C -0.204 4.204 19 C -0.187 4.187 20 C 0.022 3.978 21 C -0.048 4.048 22 O -0.544 6.544 23 Si 0.709 3.291 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.385 0.615 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.381 0.619 45 H -0.254 1.254 46 H -0.262 1.262 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 2.902 4.705 6.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.117 4.117 4 C -0.204 4.204 5 C 0.003 3.997 6 C 0.306 3.694 7 O -0.395 6.395 8 N -0.373 5.373 9 C 0.027 3.973 10 H 0.138 0.862 11 C -0.178 4.178 12 C 0.022 3.978 13 H 0.093 0.907 14 O -0.356 6.356 15 C -0.225 4.225 16 N -0.084 5.084 17 C -0.114 4.114 18 C -0.228 4.228 19 C -0.212 4.212 20 C -0.088 4.088 21 C -0.157 4.157 22 O -0.352 6.352 23 Si 0.608 3.392 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.179 0.821 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.094 0.906 44 H 0.230 0.770 45 H -0.178 1.178 46 H -0.187 1.187 Dipole moment (debyes) X Y Z Total from point charges 2.475 2.348 3.843 5.139 hybrid contribution -0.288 1.700 1.085 2.037 sum 2.187 4.048 4.928 6.742 Atomic orbital electron populations 1.22306 0.95639 1.02517 1.03213 1.22020 0.96190 0.95614 1.04102 1.21580 0.98094 0.97553 0.94454 1.21828 0.93658 1.02190 1.02764 1.21756 0.92584 0.98441 0.86897 1.20449 0.89409 0.76721 0.82822 1.90795 1.69412 1.47425 1.31871 1.46014 1.09345 1.62359 1.19553 1.22502 0.79632 0.96745 0.98435 0.86155 1.23450 0.97827 0.99704 0.96832 1.22468 0.84520 0.96833 0.93961 0.90661 1.86475 1.36266 1.37928 1.74909 1.24183 0.99000 0.97637 1.01648 1.43367 1.27414 1.14825 1.22820 1.21822 1.02120 0.87436 0.99973 1.20800 1.00481 1.01554 0.99919 1.20481 1.03903 0.95289 1.01495 1.19581 0.96591 0.96675 0.95964 1.24461 0.94984 0.85357 1.10940 1.86403 1.43188 1.21109 1.84549 0.94434 0.83338 0.85483 0.75943 0.92266 0.91053 0.92237 0.89478 0.91145 0.89700 0.92387 0.91778 0.91755 0.83299 0.76539 0.89572 0.88313 0.76687 0.89000 0.90354 0.82093 0.84448 0.83838 0.90558 0.76961 1.17810 1.18683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.11 7.89 37.16 0.29 0.18 16 2 C -0.14 0.01 4.86 -26.73 -0.13 -0.12 16 3 C -0.10 0.10 2.31 -90.62 -0.21 -0.11 16 4 C -0.15 0.19 9.14 37.16 0.34 0.53 16 5 C 0.11 0.12 2.42 -69.08 -0.17 -0.04 16 6 C 0.52 1.33 4.20 -10.99 -0.05 1.28 16 7 O -0.52 -3.57 13.64 5.55 0.08 -3.50 16 8 N -0.72 0.35 4.03 -53.02 -0.21 0.13 16 9 C 0.13 0.05 4.20 -67.12 -0.28 -0.23 16 10 H 0.12 0.42 7.42 -51.93 -0.39 0.03 16 11 C -0.14 0.20 7.66 -25.92 -0.20 0.00 16 12 C 0.08 -0.09 5.28 -25.92 -0.14 -0.23 16 13 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 14 O -0.55 -0.26 13.59 -35.23 -0.48 -0.74 16 15 C -0.19 0.12 7.71 -25.92 -0.20 -0.08 16 16 N -0.41 -1.23 1.89 -106.70 -0.20 -1.43 16 17 C 0.02 0.06 6.85 -16.75 -0.11 -0.05 16 18 C -0.20 -0.73 10.86 -39.78 -0.43 -1.16 16 19 C -0.19 -0.51 9.43 -39.78 -0.38 -0.88 16 20 C 0.02 0.06 5.88 -81.78 -0.48 -0.42 16 21 C -0.05 0.00 2.98 36.01 0.11 0.10 16 22 O -0.54 -0.02 9.75 -35.23 -0.34 -0.37 16 23 Si 0.71 -0.14 31.15 -169.99 -5.29 -5.44 16 24 H 0.06 -0.02 7.05 -51.93 -0.37 -0.38 16 25 H 0.07 0.21 3.59 -51.93 -0.19 0.02 16 26 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 27 H 0.09 0.11 4.52 -51.93 -0.23 -0.12 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.08 -0.25 6.80 -51.93 -0.35 -0.60 16 30 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.06 0.02 7.41 -51.93 -0.38 -0.37 16 33 H 0.15 0.12 4.98 -51.93 -0.26 -0.14 16 34 H 0.40 -1.28 7.50 -40.82 -0.31 -1.58 16 35 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.10 -0.35 8.12 -51.93 -0.42 -0.77 16 37 H 0.39 -1.34 9.12 45.56 0.42 -0.92 16 38 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.16 0.57 5.12 -52.49 -0.27 0.30 16 41 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 42 H 0.14 0.01 6.90 -52.49 -0.36 -0.35 16 43 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 44 H 0.38 -1.54 8.74 45.56 0.40 -1.14 16 45 H -0.25 -1.09 7.11 56.52 0.40 -0.69 16 46 H -0.26 -0.28 7.11 56.52 0.40 0.13 16 LS Contribution 348.37 15.07 5.25 5.25 Total: 0.00 -9.18 348.37 -9.37 -18.55 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -6.13 Total: -11.23 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.03 Total: -1.23 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -0.42 Total: -1.30 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.75 Total: -4.60 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: -5.29 Total: -5.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -9.18 -9.37 -18.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12360566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.412 kcal (2) G-P(sol) polarization free energy of solvation -9.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds