Wall clock time and date at job start Sat Mar 6 2021 19:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47082 * 2 1 4 4 C 1.53002 * 109.46910 * 173.61490 * 3 2 1 5 5 C 1.53004 * 109.47371 * 293.61077 * 3 2 1 6 6 C 1.50700 * 109.46711 * 66.80862 * 5 3 2 7 7 O 1.21283 * 119.99835 * 232.79860 * 6 5 3 8 8 N 1.34776 * 120.00058 * 52.80400 * 6 5 3 9 9 C 1.46498 * 119.99893 * 174.99667 * 8 6 5 10 10 H 1.09000 * 112.90953 * 23.75057 * 9 8 6 11 11 C 1.53778 * 113.61271 * 155.00015 * 9 8 6 12 12 C 1.53786 * 87.08276 * 139.98497 * 11 9 8 13 13 H 1.08997 * 113.61696 * 220.02594 * 12 11 9 14 14 O 1.42894 * 113.61703 * 89.11519 * 12 11 9 15 15 C 1.53782 * 87.07962 * 334.56840 * 12 11 9 16 16 N 1.46500 * 109.46919 * 306.81350 * 5 3 2 17 17 C 1.36344 * 125.64027 * 68.85757 * 16 5 3 18 18 C 1.34851 * 108.22079 * 180.02562 * 17 16 5 19 19 C 1.40892 * 107.41745 * 359.97438 * 18 17 16 20 20 C 1.34856 * 107.41499 * 359.73428 * 19 18 17 21 21 C 1.50703 * 125.89006 * 180.25888 * 20 19 18 22 22 O 1.42895 * 109.47198 * 150.20556 * 21 20 19 23 23 Si 1.86293 * 109.47297 * 30.19732 * 21 20 19 24 24 H 1.08996 * 109.47154 * 313.93662 * 1 2 3 25 25 H 1.09003 * 109.47056 * 73.93503 * 1 2 3 26 26 H 1.08996 * 109.47168 * 193.93816 * 1 2 3 27 27 H 1.08999 * 109.46882 * 239.99530 * 2 1 3 28 28 H 1.08999 * 109.47067 * 120.00047 * 2 1 3 29 29 H 1.08993 * 109.47524 * 53.61382 * 3 2 1 30 30 H 1.09004 * 109.47154 * 184.73827 * 4 3 2 31 31 H 1.08996 * 109.47106 * 304.73475 * 4 3 2 32 32 H 1.09001 * 109.47276 * 64.73591 * 4 3 2 33 33 H 1.08996 * 109.47498 * 186.81322 * 5 3 2 34 34 H 0.96992 * 119.99837 * 355.00138 * 8 6 5 35 35 H 1.09001 * 113.61570 * 254.52828 * 11 9 8 36 36 H 1.08993 * 113.61705 * 25.43584 * 11 9 8 37 37 H 0.96703 * 114.00462 * 180.02562 * 14 12 11 38 38 H 1.09004 * 113.61533 * 270.89013 * 15 12 11 39 39 H 1.08990 * 113.61717 * 139.97978 * 15 12 11 40 40 H 1.07995 * 125.88770 * 0.02562 * 17 16 5 41 41 H 1.07996 * 126.28982 * 179.97438 * 18 17 16 42 42 H 1.07999 * 126.29238 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.46562 * 270.20349 * 21 20 19 44 44 H 0.96701 * 114.00237 * 180.02562 * 22 21 20 45 45 H 1.48501 * 109.99878 * 60.00341 * 23 21 20 46 46 H 1.48497 * 110.00424 * 181.31937 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5616 1.4454 0.1604 5 6 1.6653 2.1159 -1.3218 6 6 0.1677 2.2634 -1.4034 7 8 -0.4306 1.8473 -2.3729 8 7 -0.5066 2.8578 -0.3993 9 6 -1.9459 3.0999 -0.5261 10 1 -2.4283 2.4278 -1.2356 11 6 -2.6755 3.1971 0.8241 12 6 -3.4933 4.3458 0.2104 13 1 -3.6715 5.1715 0.8992 14 8 -4.6803 3.9111 -0.4559 15 6 -2.3054 4.5801 -0.7377 16 7 2.1367 1.2943 -2.4393 17 6 1.6425 0.0734 -2.7916 18 6 2.3301 -0.3660 -3.8652 19 6 3.2834 0.6199 -4.1879 20 6 3.1380 1.6269 -3.3028 21 6 3.9462 2.8985 -3.2707 22 8 3.1479 3.9570 -2.7374 23 14 4.4838 3.3365 -4.9998 24 1 -0.3633 0.7130 0.7400 25 1 -0.3633 0.2844 -0.9876 26 1 -0.3633 -0.9974 0.2475 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5864 1.9882 0.8272 30 1 3.9160 2.4727 0.2449 31 1 3.8332 0.8923 1.0595 32 1 4.0195 0.9733 -0.7088 33 1 2.1307 3.1002 -1.3728 34 1 -0.0390 3.1253 0.4073 35 1 -3.2712 2.3161 1.0629 36 1 -2.0322 3.5100 1.6465 37 1 -5.1988 4.6291 -0.8443 38 1 -1.5608 5.2710 -0.3422 39 1 -2.6022 4.8155 -1.7596 40 1 0.8389 -0.4513 -2.2963 41 1 2.1780 -1.3017 -4.3825 42 1 3.9961 0.5791 -4.9983 43 1 4.8253 2.7545 -2.6425 44 1 3.6050 4.8077 -2.6876 45 1 3.2943 3.5354 -5.8664 46 1 5.3084 4.5713 -4.9780 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12360566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:56 Heat of formation + Delta-G solvation = -21.706805 kcal Electronic energy + Delta-G solvation = -28209.216903 eV Core-core repulsion = 24489.125995 eV Total energy + Delta-G solvation = -3720.090909 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.97894 -41.22051 -39.82313 -37.92956 -37.54416 -36.34404 -33.86901 -33.09328 -31.56662 -30.74343 -28.39713 -26.83506 -25.94571 -25.25761 -24.53400 -22.32177 -21.73485 -21.46783 -21.07051 -20.00310 -18.86973 -18.49428 -18.34323 -17.73432 -17.18185 -16.86615 -16.40773 -16.17436 -15.60670 -15.44997 -15.09784 -14.91115 -14.57204 -14.52807 -14.39355 -14.22878 -13.88174 -13.69252 -13.60792 -13.49179 -13.25391 -13.12863 -13.05583 -12.86665 -12.78416 -12.41545 -12.32810 -12.07608 -12.05054 -11.67461 -11.54821 -11.48507 -11.12467 -10.84292 -10.65613 -10.12340 -9.49151 -8.79368 -4.89715 1.00054 1.36508 1.46697 1.61099 1.81322 2.00491 2.14082 2.27416 3.06464 3.08415 3.36212 3.40176 3.56378 3.62914 3.68198 3.74994 3.78673 3.99512 4.08676 4.22907 4.27853 4.28689 4.42279 4.46766 4.50495 4.57002 4.61665 4.66264 4.73934 4.75883 4.79616 4.86675 4.89790 4.93611 4.98854 5.02869 5.05051 5.16591 5.24901 5.33674 5.35670 5.42541 5.44198 6.08172 6.27309 6.32189 6.48428 6.54815 6.78934 7.06605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C -0.091 4.091 4 C -0.143 4.143 5 C 0.110 3.890 6 C 0.518 3.482 7 O -0.572 6.572 8 N -0.702 5.702 9 C 0.123 3.877 10 H 0.080 0.920 11 C -0.130 4.130 12 C 0.082 3.918 13 H 0.101 0.899 14 O -0.576 6.576 15 C -0.180 4.180 16 N -0.411 5.411 17 C 0.002 3.998 18 C -0.224 4.224 19 C -0.202 4.202 20 C 0.011 3.989 21 C -0.049 4.049 22 O -0.558 6.558 23 Si 0.783 3.217 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.158 0.842 34 H 0.416 0.584 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.107 0.893 44 H 0.400 0.600 45 H -0.322 1.322 46 H -0.271 1.271 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 4.380 6.967 9.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.177 4.177 3 C -0.110 4.110 4 C -0.200 4.200 5 C 0.004 3.996 6 C 0.305 3.695 7 O -0.451 6.451 8 N -0.354 5.354 9 C 0.018 3.982 10 H 0.098 0.902 11 C -0.168 4.168 12 C 0.022 3.978 13 H 0.118 0.882 14 O -0.385 6.385 15 C -0.219 4.219 16 N -0.087 5.087 17 C -0.129 4.129 18 C -0.248 4.248 19 C -0.227 4.227 20 C -0.100 4.100 21 C -0.158 4.158 22 O -0.370 6.370 23 Si 0.688 3.312 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.175 0.825 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.249 0.751 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.125 0.875 44 H 0.252 0.748 45 H -0.251 1.251 46 H -0.197 1.197 Dipole moment (debyes) X Y Z Total from point charges 3.968 3.859 6.165 8.285 hybrid contribution -0.838 1.267 0.331 1.555 sum 3.130 5.126 6.496 8.847 Atomic orbital electron populations 1.22243 0.96359 1.02551 1.02025 1.21976 0.95424 0.96499 1.03764 1.21619 0.98785 0.96773 0.93860 1.21797 0.92843 1.03038 1.02347 1.21935 0.91337 0.98867 0.87482 1.20783 0.90090 0.76111 0.82513 1.90774 1.70489 1.49766 1.34084 1.45854 1.09019 1.61113 1.19442 1.22404 0.79854 0.96818 0.99162 0.90171 1.23491 0.97600 0.99268 0.96411 1.22609 0.83783 0.97523 0.93890 0.88172 1.86440 1.37110 1.39587 1.75354 1.24179 0.99874 0.96905 1.00929 1.43505 1.27304 1.14558 1.23287 1.21828 1.02312 0.88256 1.00455 1.21067 1.01161 1.02320 1.00254 1.20826 1.04333 0.95196 1.02321 1.20101 0.96585 0.97689 0.95640 1.24546 0.95218 0.84380 1.11654 1.86347 1.44073 1.22190 1.84386 0.93553 0.79970 0.84380 0.73338 0.91079 0.93489 0.92592 0.91139 0.90046 0.87101 0.90961 0.90965 0.93416 0.82487 0.74528 0.90872 0.85164 0.75066 0.86996 0.92356 0.82828 0.83969 0.81753 0.87546 0.74761 1.25091 1.19666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.40 7.89 71.98 0.57 0.17 16 2 C -0.14 -0.01 4.86 30.59 0.15 0.14 16 3 C -0.09 0.28 2.31 -10.79 -0.02 0.26 16 4 C -0.14 0.62 9.14 71.98 0.66 1.28 16 5 C 0.11 0.26 2.42 44.25 0.11 0.37 16 6 C 0.52 3.26 4.20 87.66 0.37 3.62 16 7 O -0.57 -9.61 13.64 -3.04 -0.04 -9.65 16 8 N -0.70 0.67 4.03 -440.04 -1.77 -1.10 16 9 C 0.12 0.21 4.20 45.52 0.19 0.40 16 10 H 0.08 0.83 7.42 -2.39 -0.02 0.81 16 11 C -0.13 0.46 7.66 31.12 0.24 0.70 16 12 C 0.08 -0.23 5.28 31.12 0.16 -0.07 16 13 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 14 O -0.58 -0.96 13.59 -148.98 -2.02 -2.98 16 15 C -0.18 0.22 7.71 31.12 0.24 0.46 16 16 N -0.41 -2.95 1.89 -491.50 -0.93 -3.88 16 17 C 0.00 0.02 6.85 83.21 0.57 0.59 16 18 C -0.22 -2.11 10.86 22.14 0.24 -1.87 16 19 C -0.20 -1.32 9.43 22.14 0.21 -1.11 16 20 C 0.01 0.07 5.88 41.08 0.24 0.31 16 21 C -0.05 0.03 2.98 71.24 0.21 0.25 16 22 O -0.56 0.53 9.75 -148.98 -1.45 -0.93 16 23 Si 0.78 -0.30 31.15 68.60 2.14 1.84 16 24 H 0.07 -0.06 7.05 -2.39 -0.02 -0.07 16 25 H 0.05 0.39 3.59 -2.39 -0.01 0.38 16 26 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.07 0.29 4.52 -2.39 -0.01 0.28 16 28 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.11 -0.93 6.80 -2.39 -0.02 -0.95 16 30 H 0.07 -0.50 8.14 -2.38 -0.02 -0.51 16 31 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.05 -0.01 7.41 -2.39 -0.02 -0.03 16 33 H 0.16 0.09 4.98 -2.39 -0.01 0.08 16 34 H 0.42 -3.40 7.50 -92.71 -0.70 -4.09 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.13 -1.30 8.12 -2.39 -0.02 -1.32 16 37 H 0.40 -2.50 9.12 -74.06 -0.68 -3.17 16 38 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.15 1.63 5.12 -2.91 -0.01 1.62 16 41 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.17 0.10 6.90 -2.91 -0.02 0.08 16 43 H 0.11 -0.66 7.96 -2.38 -0.02 -0.68 16 44 H 0.40 -3.92 8.74 -74.06 -0.65 -4.57 16 45 H -0.32 -3.64 7.11 99.48 0.71 -2.93 16 46 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 Total: 0.00 -25.79 348.37 -0.91 -26.70 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.96 Total: -15.48 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.13 Total: 5.48 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -2.70 Total: -4.98 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -3.52 Total: -13.56 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.14 Total: 1.84 kcal Total: -25.79 -0.91 -26.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12360566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.990 kcal (2) G-P(sol) polarization free energy of solvation -25.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds