Wall clock time and date at job start Sat Mar 6 2021 19:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 117.00017 * 2 1 4 4 C 1.40136 * 120.15385 * 179.97438 * 3 2 1 5 5 C 1.47540 * 120.19032 * 359.95538 * 4 3 2 6 6 O 1.21589 * 119.99616 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00238 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99884 * 180.02562 * 7 5 4 9 9 H 1.08994 * 112.90841 * 336.24152 * 8 7 5 10 10 C 1.53777 * 113.61486 * 107.49951 * 8 7 5 11 11 C 1.53785 * 87.08241 * 139.97730 * 10 8 7 12 12 H 1.09002 * 113.61570 * 220.01842 * 11 10 8 13 13 O 1.42901 * 113.69063 * 89.12535 * 11 10 8 14 14 C 1.53781 * 87.08241 * 334.56547 * 11 10 8 15 15 C 1.39700 * 119.62181 * 180.23210 * 4 3 2 16 16 C 1.37796 * 119.90686 * 359.50996 * 15 4 3 17 17 C 1.50696 * 119.85286 * 180.23236 * 16 15 4 18 18 O 1.42902 * 109.47252 * 65.23831 * 17 16 15 19 19 Si 1.86295 * 109.47295 * 185.23623 * 17 16 15 20 20 C 1.38547 * 120.29637 * 0.47317 * 16 15 4 21 21 C 1.38049 * 120.39161 * 359.78037 * 20 16 15 22 22 H 1.09000 * 109.47139 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47113 * 60.00130 * 1 2 3 24 24 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00019 * 359.97438 * 7 5 4 26 26 H 1.08999 * 113.61947 * 25.43156 * 10 8 7 27 27 H 1.08997 * 113.61348 * 254.52371 * 10 8 7 28 28 H 0.96698 * 114.00171 * 80.93851 * 13 11 10 29 29 H 1.09000 * 113.61578 * 139.97748 * 14 11 10 30 30 H 1.09001 * 113.61682 * 270.80327 * 14 11 10 31 31 H 1.07994 * 120.05158 * 179.72769 * 15 4 3 32 32 H 1.09000 * 109.47287 * 305.23688 * 17 16 15 33 33 H 0.96693 * 114.00296 * 59.99556 * 18 17 16 34 34 H 1.48500 * 110.00094 * 58.68496 * 19 17 16 35 35 H 1.48503 * 109.99987 * 180.02562 * 19 17 16 36 36 H 1.08004 * 119.79986 * 179.76301 * 20 16 15 37 37 H 1.08003 * 119.95938 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2858 0.0005 5 6 4.2550 0.0533 0.0021 6 8 3.7095 -1.0334 0.0034 7 7 5.6005 0.1318 0.0031 8 6 6.4057 -1.0921 0.0041 9 1 5.8709 -1.9514 0.4084 10 6 7.0992 -1.3742 -1.3390 11 6 8.3242 -1.8201 -0.5232 12 1 9.2740 -1.4972 -0.9497 13 8 8.3125 -3.2076 -0.1815 14 6 7.8107 -0.9045 0.6006 15 6 4.0667 2.5363 0.0055 16 6 3.3037 3.6837 -0.0005 17 6 3.9767 5.0321 -0.0005 18 8 4.6997 5.2036 -1.2211 19 14 2.6883 6.3692 0.1511 20 6 1.9206 3.6033 -0.0014 21 6 1.2925 2.3740 -0.0010 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 6.0357 0.9987 0.0025 26 1 7.2747 -0.4795 -1.9364 27 1 6.6368 -2.1805 -1.9083 28 1 8.6124 -3.7903 -0.8925 29 1 7.9226 -1.3317 1.5972 30 1 8.1817 0.1183 0.5344 31 1 5.1445 2.6038 0.0103 32 1 4.6657 5.0943 0.8418 33 1 4.1485 5.1599 -2.0143 34 1 1.9082 6.1835 1.4010 35 1 3.3392 7.7040 0.1517 36 1 1.3303 4.5078 -0.0022 37 1 0.2138 2.3195 -0.0014 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_12496546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:04 Heat of formation + Delta-G solvation = -87.642827 kcal Electronic energy + Delta-G solvation = -22007.060167 eV Core-core repulsion = 18524.778112 eV Total energy + Delta-G solvation = -3482.282055 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77641 -40.76237 -39.27518 -39.17547 -37.17776 -36.15941 -33.99743 -32.35502 -31.84018 -28.61996 -26.80016 -26.22634 -26.14812 -24.42521 -22.56481 -21.43256 -20.89413 -19.47413 -18.51122 -18.27553 -18.06975 -17.25097 -16.86552 -16.73750 -16.33332 -16.14162 -15.90579 -15.83676 -15.42778 -15.04336 -14.60625 -14.56267 -14.24162 -13.76981 -13.66687 -13.50187 -13.41402 -13.17352 -13.07718 -12.44278 -12.21849 -12.18912 -12.08551 -11.85785 -11.45986 -10.92501 -10.72867 -10.42523 -10.23778 -9.90914 -9.28941 -5.12471 -0.25749 0.18075 1.20569 1.55154 1.87166 1.90548 2.19986 2.23073 2.72472 3.01301 3.35346 3.42818 3.50175 3.60253 3.64669 3.68289 3.82472 3.95531 4.05178 4.10249 4.19502 4.19864 4.32139 4.45338 4.52024 4.57138 4.58142 4.65269 4.78263 4.86971 4.94662 4.99421 5.03305 5.17552 5.22430 5.48277 5.59875 6.28679 6.48366 6.59659 6.64639 7.37917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.279 6.279 3 C 0.193 3.807 4 C -0.175 4.175 5 C 0.561 3.439 6 O -0.515 6.515 7 N -0.722 5.722 8 C 0.132 3.868 9 H 0.121 0.879 10 C -0.185 4.185 11 C 0.082 3.918 12 H 0.075 0.925 13 O -0.550 6.550 14 C -0.142 4.142 15 C -0.020 4.020 16 C -0.169 4.169 17 C -0.062 4.062 18 O -0.541 6.541 19 Si 0.684 3.316 20 C -0.046 4.046 21 C -0.214 4.214 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.398 0.602 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.385 0.615 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.380 0.620 34 H -0.257 1.257 35 H -0.253 1.253 36 H 0.134 0.866 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 3.470 -2.833 4.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.189 6.189 3 C 0.144 3.856 4 C -0.179 4.179 5 C 0.349 3.651 6 O -0.390 6.390 7 N -0.374 5.374 8 C 0.027 3.973 9 H 0.138 0.862 10 C -0.224 4.224 11 C 0.022 3.978 12 H 0.093 0.907 13 O -0.356 6.356 14 C -0.180 4.180 15 C -0.038 4.038 16 C -0.170 4.170 17 C -0.173 4.173 18 O -0.346 6.346 19 Si 0.585 3.415 20 C -0.064 4.064 21 C -0.233 4.233 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.124 0.876 25 H 0.234 0.766 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.227 0.773 34 H -0.182 1.182 35 H -0.178 1.178 36 H 0.151 0.849 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.357 3.421 -1.361 3.924 hybrid contribution 0.514 0.034 -0.263 0.578 sum -0.843 3.455 -1.624 3.910 Atomic orbital electron populations 1.23242 0.78171 1.04791 1.01447 1.86389 1.21217 1.25177 1.86145 1.19099 0.90952 0.85076 0.90466 1.19364 0.90941 0.93935 1.13634 1.17994 0.82000 0.88651 0.76466 1.90847 1.71501 1.28618 1.48054 1.45918 1.05909 1.09452 1.76162 1.22484 0.89874 0.88523 0.96377 0.86163 1.24178 0.97743 1.02665 0.97812 1.22481 0.96679 0.82439 0.96236 0.90699 1.86474 1.89868 1.15846 1.43442 1.23465 0.94961 0.99656 0.99884 1.20963 0.99846 0.89865 0.93166 1.20118 0.93557 0.96027 1.07303 1.24959 1.03113 0.98996 0.90219 1.86501 1.37946 1.95103 1.15054 0.94839 0.81171 0.77695 0.87753 1.20968 0.93602 0.97240 0.94578 1.21238 1.00768 0.91558 1.09701 0.92336 0.92236 0.87644 0.76638 0.88947 0.90274 0.76740 0.89630 0.88301 0.84766 0.86845 0.77295 1.18170 1.17799 0.84874 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.07 8.57 -40.54 -0.35 -1.41 16 3 C 0.19 0.49 6.70 -38.69 -0.26 0.23 16 4 C -0.17 -0.44 5.89 -104.85 -0.62 -1.05 16 5 C 0.56 2.40 7.76 -12.47 -0.10 2.30 16 6 O -0.51 -4.25 14.76 -16.59 -0.24 -4.50 16 7 N -0.72 -0.82 5.30 -54.06 -0.29 -1.10 16 8 C 0.13 0.20 4.18 -67.11 -0.28 -0.08 16 9 H 0.12 0.51 7.46 -51.93 -0.39 0.13 16 10 C -0.18 0.00 7.71 -25.92 -0.20 -0.20 16 11 C 0.08 -0.04 5.27 -25.92 -0.14 -0.18 16 12 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 13 O -0.55 -0.50 13.59 -35.23 -0.48 -0.98 16 14 C -0.14 0.06 7.66 -25.91 -0.20 -0.14 16 15 C -0.02 0.00 9.16 -39.20 -0.36 -0.36 16 16 C -0.17 0.14 5.35 -104.67 -0.56 -0.42 16 17 C -0.06 0.09 2.79 36.00 0.10 0.19 16 18 O -0.54 0.62 12.83 -35.23 -0.45 0.17 16 19 Si 0.68 -1.40 29.78 -169.99 -5.06 -6.46 16 20 C -0.05 0.06 8.65 -39.54 -0.34 -0.28 16 21 C -0.21 0.06 9.03 -39.48 -0.36 -0.30 16 22 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 23 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 24 H 0.11 -0.16 8.14 -51.93 -0.42 -0.59 16 25 H 0.40 -0.65 6.76 -40.82 -0.28 -0.92 16 26 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 28 H 0.38 -1.22 9.12 45.56 0.42 -0.80 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.13 -0.26 6.40 -52.49 -0.34 -0.59 16 32 H 0.11 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.38 -1.81 8.70 45.56 0.40 -1.41 16 34 H -0.26 -0.09 7.11 56.52 0.40 0.31 16 35 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 36 H 0.13 -0.49 4.88 -52.48 -0.26 -0.75 16 37 H 0.14 -0.36 6.30 -52.48 -0.33 -0.69 16 LS Contribution 310.76 15.07 4.68 4.68 Total: 0.00 -10.06 310.76 -8.22 -18.28 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: -3.72 Total: -9.37 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.31 Total: 0.69 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -0.29 Total: -1.10 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -1.52 Total: -6.72 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.06 Total: -6.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -10.06 -8.22 -18.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12496546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.361 kcal (2) G-P(sol) polarization free energy of solvation -10.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds