Wall clock time and date at job start Sat Mar 6 2021 19:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86294 * 109.47170 * 2 1 4 4 C 1.50700 * 109.46808 * 120.00349 * 2 1 3 5 5 C 1.38335 * 119.86972 * 244.72351 * 4 2 1 6 6 C 1.37997 * 120.13114 * 180.27101 * 5 4 2 7 7 C 1.39405 * 119.86805 * 0.02562 * 6 5 4 8 8 C 1.48274 * 120.12574 * 180.02562 * 7 6 5 9 9 C 1.39507 * 119.97439 * 179.69785 * 8 7 6 10 10 C 1.37671 * 120.02460 * 179.76307 * 9 8 7 11 11 C 1.39710 * 119.97447 * 0.51092 * 10 9 8 12 12 C 1.47714 * 120.02517 * 179.72132 * 11 10 9 13 13 O 1.21577 * 119.99904 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00010 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00004 * 179.97438 * 14 12 11 16 16 H 1.09008 * 112.84884 * 23.80807 * 15 14 12 17 17 C 1.53779 * 113.61565 * 155.00170 * 15 14 12 18 18 C 1.53776 * 87.08350 * 139.98341 * 17 15 14 19 19 H 1.09001 * 113.61772 * 220.02381 * 18 17 15 20 20 O 1.42901 * 113.61417 * 89.19780 * 18 17 15 21 21 C 1.53778 * 113.61632 * 252.50345 * 15 14 12 22 22 C 1.39710 * 119.94925 * 359.74432 * 11 10 9 23 23 C 1.37668 * 119.97545 * 0.02562 * 22 11 10 24 24 C 1.39400 * 119.74719 * 359.97438 * 7 6 5 25 25 C 1.37998 * 119.87179 * 0.02562 * 24 7 6 26 26 H 0.96692 * 114.00264 * 300.00027 * 1 2 3 27 27 H 1.09005 * 109.47120 * 239.99773 * 2 1 3 28 28 H 1.48501 * 110.00367 * 299.99939 * 3 2 1 29 29 H 1.48506 * 109.99848 * 61.31905 * 3 2 1 30 30 H 1.08001 * 119.93428 * 0.27739 * 5 4 2 31 31 H 1.08001 * 120.06988 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.99026 * 359.97438 * 9 8 7 33 33 H 1.07994 * 120.01490 * 180.25241 * 10 9 8 34 34 H 0.96994 * 119.99907 * 0.02562 * 14 12 11 35 35 H 1.08998 * 113.61703 * 254.53443 * 17 15 14 36 36 H 1.09008 * 113.61316 * 25.43087 * 17 15 14 37 37 H 0.96699 * 113.99400 * 179.97438 * 20 18 17 38 38 H 1.09005 * 113.61041 * 334.56126 * 21 15 14 39 39 H 1.09000 * 113.61815 * 105.47117 * 21 15 14 40 40 H 1.08006 * 120.01302 * 179.97438 * 22 11 10 41 41 H 1.08006 * 119.98364 * 179.97438 * 23 22 11 42 42 H 1.08000 * 120.06821 * 180.02562 * 24 7 6 43 43 H 1.08001 * 119.94033 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6438 -0.0106 2.1875 6 6 3.1111 -0.6570 3.3136 7 6 2.8643 -2.0182 3.4854 8 6 3.3632 -2.7184 4.6934 9 6 3.1089 -4.0793 4.8652 10 6 3.5758 -4.7315 5.9841 11 6 4.2954 -4.0277 6.9529 12 6 4.7916 -4.7250 8.1568 13 8 5.4173 -4.1119 8.9999 14 7 4.5507 -6.0409 8.3207 15 6 5.0433 -6.7327 9.5145 16 1 5.2081 -6.0596 10.3560 17 6 4.2315 -7.9869 9.8788 18 6 5.5716 -8.6593 10.2202 19 1 5.6317 -9.6999 9.9016 20 8 5.9778 -8.4699 11.5771 21 6 6.2262 -7.6751 9.2363 22 6 4.5448 -2.6636 6.7825 23 6 4.0810 -2.0145 5.6605 24 6 2.1457 -2.7184 2.5176 25 6 1.6833 -2.0614 1.3956 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 1.5616 2.4679 -1.2085 29 1 1.5879 2.4585 1.2243 30 1 2.8347 1.0439 2.0532 31 1 3.6669 -0.1095 4.0605 32 1 2.5485 -4.6222 4.1184 33 1 3.3824 -5.7859 6.1148 34 1 4.0518 -6.5301 7.6480 35 1 3.5795 -7.8497 10.7414 36 1 3.7205 -8.4385 9.0284 37 1 6.8198 -8.8909 11.7980 38 1 6.2605 -8.0415 8.2103 39 1 7.1846 -7.2863 9.5804 40 1 5.1006 -2.1184 7.5310 41 1 4.2734 -0.9599 5.5288 42 1 1.9511 -3.7730 2.6456 43 1 1.1261 -2.6027 0.6453 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13158362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:20 Heat of formation + Delta-G solvation = -31.083354 kcal Electronic energy + Delta-G solvation = -25646.856146 eV Core-core repulsion = 21817.266705 eV Total energy + Delta-G solvation = -3829.589441 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61196 -40.89530 -40.03286 -39.06570 -37.64215 -36.32726 -34.44562 -33.62809 -32.53682 -31.57558 -30.78472 -27.22839 -26.78756 -25.63206 -24.66906 -24.03985 -22.60470 -22.28323 -21.39232 -20.94514 -19.25880 -18.60532 -18.34396 -17.80157 -17.29121 -16.87646 -16.43831 -16.32535 -16.20253 -16.04625 -15.74421 -15.43230 -15.15555 -15.06266 -14.89332 -14.57109 -14.28399 -14.23989 -14.04548 -13.70138 -13.55221 -13.48106 -13.23655 -13.11506 -12.78440 -12.60277 -12.30543 -12.07248 -11.94187 -11.52999 -11.47036 -11.18820 -10.78372 -10.76851 -10.59297 -10.14100 -10.07254 -9.95094 -9.08466 -4.93374 -0.70175 0.34078 0.40795 0.49276 1.29923 1.57881 1.75142 1.94387 2.05711 2.59117 2.99783 3.10905 3.37143 3.42846 3.46466 3.62611 3.65347 3.67346 3.77624 3.80753 3.87106 4.01080 4.04279 4.12659 4.26128 4.27955 4.37212 4.50826 4.54837 4.64448 4.66020 4.68207 4.80525 4.88731 4.91502 4.93646 4.98112 5.05618 5.08567 5.13780 5.20290 5.26152 5.41338 5.45476 5.50089 5.65156 5.78912 5.93453 6.43317 6.46289 6.84302 7.10088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.082 4.082 3 Si 0.762 3.238 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.108 4.108 7 C -0.059 4.059 8 C -0.022 4.022 9 C -0.119 4.119 10 C -0.073 4.073 11 C -0.153 4.153 12 C 0.554 3.446 13 O -0.586 6.586 14 N -0.700 5.700 15 C 0.116 3.884 16 H 0.083 0.917 17 C -0.133 4.133 18 C 0.082 3.918 19 H 0.101 0.899 20 O -0.576 6.576 21 C -0.178 4.178 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.107 4.107 25 C -0.101 4.101 26 H 0.386 0.614 27 H 0.126 0.874 28 H -0.305 1.305 29 H -0.283 1.283 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.417 0.583 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -5.132 -3.929 6.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.191 4.191 3 Si 0.669 3.331 4 C -0.116 4.116 5 C -0.139 4.139 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.137 4.137 10 C -0.091 4.091 11 C -0.156 4.156 12 C 0.343 3.657 13 O -0.467 6.467 14 N -0.352 5.352 15 C 0.011 3.989 16 H 0.101 0.899 17 C -0.170 4.170 18 C 0.022 3.978 19 H 0.119 0.881 20 O -0.385 6.385 21 C -0.217 4.217 22 C -0.091 4.091 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.235 0.765 27 H 0.144 0.856 28 H -0.234 1.234 29 H -0.210 1.210 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.151 -3.886 -3.836 5.463 hybrid contribution -0.641 -0.257 0.482 0.842 sum -0.490 -4.142 -3.355 5.353 Atomic orbital electron populations 1.86577 1.18501 1.80339 1.50195 1.25208 0.83418 1.11593 0.98861 0.94067 0.90451 0.72396 0.76222 1.20447 0.99274 0.95114 0.96735 1.21166 0.98355 1.00407 0.93986 1.21470 0.99346 0.93721 0.97995 1.18932 0.99186 0.93836 0.94000 1.19156 0.95932 0.93970 0.93150 1.21486 1.00282 0.93498 0.98432 1.21477 0.94547 1.00905 0.92207 1.19992 1.04412 0.95235 0.95983 1.18688 0.78614 0.82520 0.85878 1.90772 1.42742 1.67396 1.45781 1.45805 1.56846 1.08577 1.23979 1.22512 0.96163 0.92376 0.87815 0.89879 1.23518 0.96406 0.94094 1.03027 1.22605 0.95257 0.98371 0.81559 0.88097 1.86440 1.44951 1.79801 1.27317 1.24167 0.98155 0.97501 1.01862 1.21259 0.97011 0.93436 0.97353 1.21382 0.98267 1.01255 0.93097 1.21527 0.96788 1.01058 0.93078 1.21122 0.98913 0.93900 0.97944 0.76503 0.85576 1.23355 1.20984 0.84063 0.83780 0.82452 0.82297 0.74419 0.90859 0.85181 0.74988 0.86970 0.91834 0.85649 0.83425 0.83495 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.88 12.83 -148.98 -1.91 -2.79 16 2 C -0.08 0.14 2.80 71.24 0.20 0.34 16 3 Si 0.76 -1.91 29.87 68.60 2.05 0.14 16 4 C -0.12 0.17 5.36 -19.82 -0.11 0.07 16 5 C -0.12 0.29 8.65 22.24 0.19 0.48 16 6 C -0.11 0.21 9.43 22.49 0.21 0.42 16 7 C -0.06 0.06 5.88 -20.05 -0.12 -0.06 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 0.43 9.41 22.44 0.21 0.65 16 10 C -0.07 0.25 9.52 22.49 0.21 0.47 16 11 C -0.15 -0.49 5.88 -20.06 -0.12 -0.61 16 12 C 0.55 4.06 7.77 86.75 0.67 4.73 16 13 O -0.59 -9.91 15.93 -3.96 -0.06 -9.97 16 14 N -0.70 -0.01 5.30 -443.02 -2.35 -2.36 16 15 C 0.12 0.23 4.18 45.52 0.19 0.42 16 16 H 0.08 0.82 7.46 -2.38 -0.02 0.81 16 17 C -0.13 0.44 7.66 31.12 0.24 0.68 16 18 C 0.08 -0.26 5.27 31.12 0.16 -0.09 16 19 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 20 O -0.58 -0.61 13.59 -148.98 -2.03 -2.64 16 21 C -0.18 0.30 7.71 31.12 0.24 0.54 16 22 C -0.07 -0.31 9.58 22.49 0.22 -0.09 16 23 C -0.12 -0.07 9.41 22.44 0.21 0.14 16 24 C -0.11 0.26 9.43 22.49 0.21 0.47 16 25 C -0.10 0.15 9.67 22.24 0.21 0.36 16 26 H 0.39 -1.43 8.70 -74.06 -0.64 -2.07 16 27 H 0.13 -0.43 7.96 -2.38 -0.02 -0.45 16 28 H -0.31 -1.72 7.11 99.48 0.71 -1.01 16 29 H -0.28 -0.35 7.01 99.48 0.70 0.35 16 30 H 0.14 -0.77 4.82 -2.91 -0.01 -0.79 16 31 H 0.14 -0.77 6.19 -2.91 -0.02 -0.79 16 32 H 0.16 -1.41 6.19 -2.91 -0.02 -1.42 16 33 H 0.16 -1.70 6.39 -2.91 -0.02 -1.72 16 34 H 0.42 -3.20 6.74 -92.71 -0.63 -3.82 16 35 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.13 -1.27 8.12 -2.38 -0.02 -1.29 16 37 H 0.40 -2.84 9.12 -74.06 -0.68 -3.51 16 38 H 0.11 -0.64 8.14 -2.38 -0.02 -0.66 16 39 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.13 0.79 7.64 -2.91 -0.02 0.76 16 41 H 0.15 -0.49 6.19 -2.91 -0.02 -0.51 16 42 H 0.15 -1.03 6.19 -2.91 -0.02 -1.05 16 43 H 0.13 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: 0.00 -24.93 357.46 -2.20 -27.12 By element: Atomic # 1 Polarization: -17.50 SS G_CDS: -0.82 Total: -18.32 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 2.93 Total: 8.82 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -2.35 Total: -2.36 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -4.00 Total: -15.40 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.05 Total: 0.14 kcal Total: -24.93 -2.20 -27.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13158362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.960 kcal (2) G-P(sol) polarization free energy of solvation -24.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds