Wall clock time and date at job start Sat Mar 6 2021 19:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38980 * 119.95696 * 2 1 4 4 O 1.35709 * 119.90994 * 359.97438 * 3 2 1 5 5 C 1.39010 * 120.17403 * 179.97438 * 3 2 1 6 6 C 1.50706 * 119.95425 * 180.02562 * 5 3 2 7 7 O 1.42899 * 109.46961 * 285.00277 * 6 5 3 8 8 Si 1.86299 * 109.47263 * 164.99977 * 6 5 3 9 9 C 1.37685 * 120.09453 * 359.76551 * 5 3 2 10 10 C 1.39759 * 119.90590 * 0.53116 * 9 5 3 11 11 C 1.47599 * 120.08851 * 179.71759 * 10 9 5 12 12 O 1.21581 * 119.99928 * 359.73091 * 11 10 9 13 13 N 1.34769 * 119.99986 * 179.72509 * 11 10 9 14 14 C 1.46507 * 119.99871 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.84802 * 336.20386 * 14 13 11 16 16 C 1.54053 * 113.61608 * 107.51032 * 14 13 11 17 17 C 1.53781 * 86.98540 * 139.97785 * 16 14 13 18 18 H 1.09002 * 113.61408 * 219.97782 * 17 16 14 19 19 O 1.42905 * 113.61335 * 89.16138 * 17 16 14 20 20 C 1.53776 * 113.61381 * 205.00131 * 14 13 11 21 21 C 1.37727 * 119.95779 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47165 * 269.97905 * 1 2 3 23 23 H 1.09004 * 109.46475 * 29.98232 * 1 2 3 24 24 H 1.09002 * 109.47277 * 149.97571 * 1 2 3 25 25 H 0.96705 * 113.99531 * 90.00123 * 4 3 2 26 26 H 1.09000 * 109.46639 * 44.99631 * 6 5 3 27 27 H 0.96702 * 113.99690 * 299.99245 * 7 6 5 28 28 H 1.48500 * 109.99658 * 58.68163 * 8 6 5 29 29 H 1.48496 * 109.99920 * 180.02562 * 8 6 5 30 30 H 1.07997 * 120.04791 * 180.27779 * 9 5 3 31 31 H 0.96997 * 120.00520 * 0.02562 * 13 11 10 32 32 H 1.08999 * 113.61302 * 25.47177 * 16 14 13 33 33 H 1.08998 * 113.69472 * 254.49143 * 16 14 13 34 34 H 0.96697 * 113.99979 * 80.85878 * 19 17 16 35 35 H 1.09006 * 113.61386 * 105.47347 * 20 14 13 36 36 H 1.09003 * 113.61861 * 334.57120 * 20 14 13 37 37 H 1.08010 * 120.03807 * 0.02692 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 0.0005 6 6 4.3386 2.5180 0.0011 7 8 4.2726 3.1048 -1.3001 8 14 6.1197 2.2156 0.4563 9 6 4.2860 0.0208 0.0059 10 6 3.5919 -1.1922 -0.0003 11 6 4.3328 -2.4688 -0.0009 12 8 5.5486 -2.4660 -0.0008 13 7 3.6616 -3.6375 -0.0013 14 6 4.3970 -4.9046 -0.0013 15 1 5.4045 -4.8092 -0.4062 16 6 4.3390 -5.6517 1.3447 17 6 4.1913 -6.9459 0.5273 18 1 3.4785 -7.6522 0.9530 19 8 5.4391 -7.5538 0.1873 20 6 3.6020 -6.0782 -0.5973 21 6 2.1948 -1.1933 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3632 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 1.3220 2.7181 0.8828 26 1 3.8875 3.1937 0.7277 27 1 4.6566 2.5572 -1.9985 28 1 6.7371 1.2707 -0.5087 29 1 6.8675 3.4985 0.4611 30 1 5.3659 0.0258 0.0109 31 1 2.6916 -3.6398 -0.0017 32 1 3.4595 -5.4092 1.9411 33 1 5.2663 -5.5991 1.9152 34 1 5.8263 -8.0818 0.8989 35 1 3.9347 -6.3697 -1.5936 36 1 2.5214 -5.9522 -0.5308 37 1 1.6547 -2.1286 -0.0014 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13287732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:38 Heat of formation + Delta-G solvation = -107.228631 kcal Electronic energy + Delta-G solvation = -21876.388288 eV Core-core repulsion = 18393.256929 eV Total energy + Delta-G solvation = -3483.131359 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81583 -40.89425 -39.65294 -37.99586 -37.51265 -36.31949 -34.22522 -33.88940 -31.63590 -27.99280 -27.02831 -26.77299 -26.02605 -24.03333 -22.09740 -21.62992 -20.86714 -19.62412 -18.86129 -18.43717 -18.13554 -17.32694 -16.84963 -16.58000 -16.39441 -16.13405 -15.87443 -15.72643 -15.41857 -14.80858 -14.57522 -14.34171 -14.08830 -13.89338 -13.65942 -13.48971 -13.29066 -13.18377 -12.90439 -12.78363 -12.48836 -12.29006 -11.95108 -11.64340 -11.46124 -11.19595 -10.75950 -10.64448 -10.20700 -9.98719 -9.65318 -5.04249 -0.41139 0.05628 1.18392 1.50391 1.57618 1.83535 2.02356 2.53694 3.10993 3.12455 3.28942 3.43859 3.50779 3.56223 3.68318 3.70719 3.80772 4.00571 4.13015 4.16281 4.36072 4.44555 4.54097 4.62841 4.68028 4.72731 4.82335 4.83701 4.94546 4.99627 5.02143 5.04898 5.11786 5.21403 5.32359 5.44908 5.60475 6.37413 6.41725 6.76494 6.85523 7.08483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.160 3.840 4 O -0.495 6.495 5 C -0.153 4.153 6 C -0.060 4.060 7 O -0.540 6.540 8 Si 0.747 3.253 9 C -0.067 4.067 10 C -0.152 4.152 11 C 0.557 3.443 12 O -0.583 6.583 13 N -0.699 5.699 14 C 0.116 3.884 15 H 0.083 0.917 16 C -0.176 4.176 17 C 0.081 3.919 18 H 0.101 0.899 19 O -0.577 6.577 20 C -0.133 4.133 21 C -0.052 4.052 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.413 0.587 26 H 0.135 0.865 27 H 0.382 0.618 28 H -0.299 1.299 29 H -0.290 1.290 30 H 0.129 0.871 31 H 0.417 0.583 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -3.891 5.448 10.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.114 3.886 4 O -0.309 6.309 5 C -0.154 4.154 6 C -0.170 4.170 7 O -0.347 6.347 8 Si 0.654 3.346 9 C -0.085 4.085 10 C -0.155 4.155 11 C 0.346 3.654 12 O -0.464 6.464 13 N -0.351 5.351 14 C 0.011 3.989 15 H 0.101 0.899 16 C -0.215 4.215 17 C 0.021 3.979 18 H 0.118 0.882 19 O -0.386 6.386 20 C -0.171 4.171 21 C -0.071 4.071 22 H 0.108 0.892 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.274 0.726 26 H 0.152 0.848 27 H 0.231 0.769 28 H -0.226 1.226 29 H -0.218 1.218 30 H 0.146 0.854 31 H 0.256 0.744 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.712 -3.118 4.381 8.600 hybrid contribution 0.140 -0.107 -0.384 0.422 sum -6.572 -3.225 3.997 8.341 Atomic orbital electron populations 1.20773 0.88079 1.04072 1.03880 1.20464 0.98403 0.91645 1.01488 1.18429 0.88558 0.85983 0.95596 1.84736 1.75379 1.35566 1.35253 1.20503 0.94256 0.95306 1.05351 1.24878 1.09802 0.94003 0.88308 1.86612 1.82868 1.48170 1.17073 0.94207 0.73409 0.77092 0.89851 1.21109 1.00311 0.91133 0.95995 1.19787 0.94489 0.92380 1.08844 1.18506 0.86810 0.84831 0.75298 1.90789 1.15579 1.88196 1.51855 1.45784 1.10895 1.04510 1.73867 1.22578 0.96712 0.81369 0.98220 0.89856 1.24205 1.03830 0.96673 0.96788 1.22613 0.86377 0.92932 0.95937 0.88177 1.86440 1.37414 1.69807 1.44936 1.23520 1.01637 0.92815 0.99134 1.21372 0.91419 0.99203 0.95101 0.89243 0.91310 0.89701 0.72569 0.84764 0.76896 1.22647 1.21752 0.85355 0.74376 0.86791 0.91661 0.75001 0.91000 0.85121 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.82 9.79 71.24 0.70 1.52 16 2 C -0.12 0.37 5.89 -19.81 -0.12 0.25 16 3 C 0.16 -0.02 6.66 22.63 0.15 0.13 16 4 O -0.50 0.72 11.84 -90.30 -1.07 -0.35 16 5 C -0.15 -0.27 5.27 -19.81 -0.10 -0.38 16 6 C -0.06 -0.09 2.37 71.24 0.17 0.08 16 7 O -0.54 -3.06 12.88 -148.98 -1.92 -4.98 16 8 Si 0.75 2.02 30.23 68.60 2.07 4.10 16 9 C -0.07 -0.29 8.20 22.51 0.18 -0.11 16 10 C -0.15 -0.38 5.87 -20.08 -0.12 -0.50 16 11 C 0.56 3.51 7.76 86.72 0.67 4.18 16 12 O -0.58 -9.30 15.94 -3.97 -0.06 -9.37 16 13 N -0.70 0.79 5.31 -442.71 -2.35 -1.56 16 14 C 0.12 0.11 4.18 45.61 0.19 0.30 16 15 H 0.08 0.75 7.46 -2.39 -0.02 0.73 16 16 C -0.18 0.52 7.73 31.21 0.24 0.76 16 17 C 0.08 -0.32 5.27 31.12 0.16 -0.15 16 18 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 19 O -0.58 -0.30 13.59 -148.98 -2.02 -2.33 16 20 C -0.13 0.54 7.66 31.12 0.24 0.78 16 21 C -0.05 0.20 9.18 22.50 0.21 0.41 16 22 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 23 H 0.07 -0.33 7.52 -2.38 -0.02 -0.35 16 24 H 0.08 -0.83 8.08 -2.39 -0.02 -0.85 16 25 H 0.41 -4.49 9.06 -74.05 -0.67 -5.16 16 26 H 0.13 -0.31 7.82 -2.39 -0.02 -0.33 16 27 H 0.38 0.50 8.70 -74.06 -0.64 -0.14 16 28 H -0.30 -2.90 6.69 99.48 0.67 -2.24 16 29 H -0.29 -2.52 7.11 99.48 0.71 -1.81 16 30 H 0.13 0.93 4.43 -2.91 -0.01 0.92 16 31 H 0.42 -3.72 6.75 -92.71 -0.63 -4.35 16 32 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.40 -3.02 9.12 -74.06 -0.68 -3.70 16 35 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.13 -1.38 8.12 -2.39 -0.02 -1.40 16 37 H 0.16 -1.87 6.40 -2.91 -0.02 -1.88 16 Total: 0.00 -26.23 313.59 -4.24 -30.47 By element: Atomic # 1 Polarization: -21.80 SS G_CDS: -1.47 Total: -23.26 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 2.58 Total: 7.27 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -2.35 Total: -1.56 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -5.08 Total: -17.02 kcal Atomic # 14 Polarization: 2.02 SS G_CDS: 2.07 Total: 4.10 kcal Total: -26.23 -4.24 -30.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13287732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.762 kcal (2) G-P(sol) polarization free energy of solvation -26.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds