Wall clock time and date at job start Sat Mar 6 2021 19:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34844 * 125.90041 * 149.68681 * 4 2 1 6 6 C 1.40939 * 107.46908 * 179.90638 * 5 4 2 7 7 C 1.34849 * 107.47079 * 0.35452 * 6 5 4 8 8 N 1.36568 * 108.19442 * 359.78677 * 7 6 5 9 9 C 1.40208 * 125.66602 * 179.97438 * 8 7 6 10 10 C 1.38831 * 120.06213 * 129.76637 * 9 8 7 11 11 C 1.38122 * 119.92984 * 179.76304 * 10 9 8 12 12 C 1.38274 * 120.06504 * 0.49009 * 11 10 9 13 13 C 1.50700 * 119.93579 * 179.74183 * 12 11 10 14 14 C 1.50700 * 109.47286 * 270.02459 * 13 12 11 15 15 O 1.21276 * 119.99808 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.46507 * 119.99645 * 179.97438 * 16 14 13 18 18 H 1.09008 * 112.84873 * 25.33570 * 17 16 14 19 19 C 1.53783 * 113.61037 * 156.52698 * 17 16 14 20 20 C 1.53784 * 87.07571 * 139.98341 * 19 17 16 21 21 H 1.09004 * 113.61566 * 220.01535 * 20 19 17 22 22 O 1.42905 * 113.61392 * 89.20285 * 20 19 17 23 23 C 1.53774 * 113.61492 * 254.13548 * 17 16 14 24 24 C 1.38278 * 120.13271 * 359.76711 * 12 11 10 25 25 C 1.38122 * 120.06713 * 359.97438 * 24 12 11 26 26 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 27 27 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 28 28 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 29 29 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 30 30 H 1.08006 * 126.26548 * 0.03551 * 5 4 2 31 31 H 1.08005 * 126.26882 * 180.14453 * 6 5 4 32 32 H 1.07996 * 125.90604 * 179.78452 * 7 6 5 33 33 H 1.07996 * 120.03490 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.96769 * 180.20660 * 11 10 9 35 35 H 1.09000 * 109.47267 * 30.02144 * 13 12 11 36 36 H 1.09003 * 109.47150 * 150.01804 * 13 12 11 37 37 H 0.96998 * 120.00421 * 0.02562 * 16 14 13 38 38 H 1.08994 * 113.61637 * 254.53002 * 19 17 16 39 39 H 1.08994 * 113.61264 * 25.35474 * 19 17 16 40 40 H 0.96695 * 113.99928 * 179.97438 * 22 20 19 41 41 H 1.08995 * 113.61553 * 334.57181 * 23 17 16 42 42 H 1.09011 * 113.61118 * 105.47371 * 23 17 16 43 43 H 1.08001 * 119.96593 * 179.97438 * 24 12 11 44 44 H 1.07995 * 120.03457 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 3.0839 -0.4484 -1.8795 6 6 3.1680 -1.3391 -2.9686 7 6 2.0599 -2.1073 -2.9498 8 7 1.2951 -1.7266 -1.8843 9 6 0.0614 -2.2858 -1.5222 10 6 -0.1593 -2.6955 -0.2142 11 6 -1.3774 -3.2415 0.1407 12 6 -2.3728 -3.3897 -0.8076 13 6 -3.6986 -3.9912 -0.4185 14 6 -3.6463 -5.4857 -0.6048 15 8 -2.6323 -6.0106 -1.0136 16 7 -4.7263 -6.2389 -0.3169 17 6 -4.6755 -7.6918 -0.4985 18 1 -3.6631 -8.0911 -0.4358 19 6 -5.6937 -8.4562 0.3639 20 6 -5.9227 -9.3672 -0.8538 21 1 -6.9673 -9.6389 -1.0055 22 8 -5.0442 -10.4934 -0.8994 23 6 -5.4581 -8.1868 -1.7262 24 6 -2.1539 -2.9875 -2.1124 25 6 -0.9398 -2.4359 -2.4720 26 1 -0.3934 0.4416 -0.7651 27 1 1.7924 -0.5138 0.8900 28 1 1.5877 2.4585 -1.2243 29 1 1.5613 2.4680 1.2084 30 1 3.8108 0.3045 -1.6123 31 1 3.9711 -1.3938 -3.6887 32 1 1.8188 -2.8886 -3.6553 33 1 0.6193 -2.5841 0.5258 34 1 -1.5510 -3.5573 1.1588 35 1 -3.9088 -3.7624 0.6263 36 1 -4.4854 -3.5740 -1.0471 37 1 -5.5373 -5.8190 0.0098 38 1 -5.2468 -8.9695 1.2152 39 1 -6.5664 -7.8634 0.6376 40 1 -5.1836 -11.0702 -1.6628 41 1 -6.2669 -7.5206 -2.0261 42 1 -4.8210 -8.4830 -2.5597 43 1 -2.9331 -3.1049 -2.8510 44 1 -0.7693 -2.1223 -3.4913 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13287746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:40 Heat of formation + Delta-G solvation = -1.396098 kcal Electronic energy + Delta-G solvation = -27346.285149 eV Core-core repulsion = 23425.245654 eV Total energy + Delta-G solvation = -3921.039494 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.72346 -41.35267 -40.23981 -39.30151 -37.86743 -36.28644 -34.88239 -33.89080 -32.18805 -31.72506 -31.05248 -28.05387 -26.79582 -26.08702 -25.28834 -24.01827 -23.24530 -21.61388 -21.37226 -20.89274 -20.64173 -19.34089 -18.55510 -18.10247 -17.59853 -17.28946 -17.00832 -16.48566 -16.36543 -16.14585 -15.84952 -15.72225 -15.31039 -15.20503 -14.83095 -14.53161 -14.46229 -14.35261 -14.18992 -13.97055 -13.72460 -13.52394 -13.31497 -13.22824 -13.18845 -12.93506 -12.61403 -12.41230 -12.29648 -12.13097 -11.94854 -11.47306 -11.11187 -10.93150 -10.77690 -10.31824 -10.06979 -10.00772 -9.17773 -9.05583 -4.90240 -0.04031 0.32307 1.05316 1.39771 1.58050 1.65728 1.82450 1.98551 2.09830 2.16723 2.70941 3.09799 3.22625 3.43651 3.58596 3.65192 3.67296 3.72674 3.78821 3.85091 3.97256 4.11394 4.12341 4.19387 4.28869 4.46170 4.49774 4.51807 4.53380 4.60348 4.64192 4.65870 4.79200 4.81731 4.93152 4.94376 4.97231 5.10132 5.16454 5.18829 5.26189 5.35502 5.47063 5.51225 5.76195 5.92547 6.17897 6.34611 6.47339 6.53765 6.81606 7.24728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.061 4.061 3 Si 0.804 3.196 4 C -0.027 4.027 5 C -0.192 4.192 6 C -0.198 4.198 7 C -0.026 4.026 8 N -0.399 5.399 9 C 0.112 3.888 10 C -0.096 4.096 11 C -0.100 4.100 12 C -0.069 4.069 13 C -0.096 4.096 14 C 0.511 3.489 15 O -0.584 6.584 16 N -0.708 5.708 17 C 0.120 3.880 18 H 0.077 0.923 19 C -0.132 4.132 20 C 0.079 3.921 21 H 0.099 0.901 22 O -0.577 6.577 23 C -0.177 4.177 24 C -0.098 4.098 25 C -0.129 4.129 26 H 0.378 0.622 27 H 0.123 0.877 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.420 0.580 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.399 0.601 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.145 0.855 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 1.076 0.266 6.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.169 4.169 3 Si 0.707 3.293 4 C -0.136 4.136 5 C -0.216 4.216 6 C -0.222 4.222 7 C -0.153 4.153 8 N -0.073 5.073 9 C 0.022 3.978 10 C -0.115 4.115 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.136 4.136 14 C 0.299 3.701 15 O -0.463 6.463 16 N -0.361 5.361 17 C 0.014 3.986 18 H 0.096 0.904 19 C -0.170 4.170 20 C 0.019 3.981 21 H 0.117 0.883 22 O -0.386 6.386 23 C -0.216 4.216 24 C -0.116 4.116 25 C -0.148 4.148 26 H 0.226 0.774 27 H 0.141 0.859 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.190 0.810 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.148 0.852 40 H 0.250 0.750 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.163 0.837 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.582 1.339 1.168 5.858 hybrid contribution -1.200 -0.587 -1.127 1.748 sum -6.782 0.752 0.040 6.823 Atomic orbital electron populations 1.86594 1.18116 1.80034 1.49607 1.25078 0.83566 1.11999 0.96234 0.93454 0.89967 0.69730 0.76127 1.21301 0.96850 0.95432 1.00064 1.21067 0.98096 1.04472 0.97999 1.21246 0.99541 0.99526 1.01925 1.22312 0.94098 1.04627 0.94288 1.41588 1.15184 1.27284 1.23198 1.17804 0.84993 1.00266 0.94690 1.20895 0.98199 0.97761 0.94633 1.21040 0.92238 0.98242 1.00298 1.19582 0.95811 0.97948 0.93596 1.20765 0.96288 0.89573 1.06940 1.21109 0.82669 0.90250 0.76066 1.90746 1.33178 1.75405 1.46992 1.45913 1.16037 1.06893 1.67214 1.22369 0.99139 0.79763 0.97299 0.90445 1.23496 0.99911 0.96648 0.96979 1.22673 0.93808 0.85089 0.96502 0.88332 1.86438 1.61333 1.38930 1.51905 1.24173 1.00916 0.99152 0.97403 1.21069 0.96913 0.97542 0.96080 1.21117 0.92742 1.01605 0.99332 0.77408 0.85925 1.22087 1.22063 0.80991 0.82552 0.81251 0.86360 0.84522 0.85064 0.84636 0.74201 0.91096 0.85186 0.75047 0.86963 0.92161 0.83737 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.33 9.86 -148.98 -1.47 -3.80 16 2 C -0.06 -0.13 2.28 71.23 0.16 0.03 16 3 Si 0.80 -0.39 31.13 68.60 2.14 1.75 16 4 C -0.03 -0.14 6.02 41.04 0.25 0.11 16 5 C -0.19 -0.66 9.42 22.15 0.21 -0.45 16 6 C -0.20 -0.94 10.86 22.15 0.24 -0.70 16 7 C -0.03 -0.17 11.12 83.18 0.93 0.76 16 8 N -0.40 -2.96 2.87 -333.42 -0.96 -3.92 16 9 C 0.11 0.82 4.89 38.08 0.19 1.01 16 10 C -0.10 -0.69 7.66 22.38 0.17 -0.52 16 11 C -0.10 -0.47 9.69 22.25 0.22 -0.25 16 12 C -0.07 -0.17 4.38 -19.85 -0.09 -0.26 16 13 C -0.10 0.41 5.83 29.10 0.17 0.58 16 14 C 0.51 1.31 7.82 87.66 0.69 2.00 16 15 O -0.58 -8.15 15.65 -3.02 -0.05 -8.19 16 16 N -0.71 2.18 5.36 -440.03 -2.36 -0.18 16 17 C 0.12 0.10 4.15 45.51 0.19 0.29 16 18 H 0.08 0.73 7.50 -2.38 -0.02 0.71 16 19 C -0.13 0.50 7.66 31.12 0.24 0.73 16 20 C 0.08 -0.25 5.28 31.18 0.16 -0.08 16 21 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 22 O -0.58 -0.78 13.59 -148.98 -2.02 -2.81 16 23 C -0.18 0.39 7.72 31.18 0.24 0.63 16 24 C -0.10 -0.28 9.69 22.25 0.22 -0.06 16 25 C -0.13 -0.66 9.66 22.38 0.22 -0.44 16 26 H 0.38 0.57 8.70 -74.06 -0.64 -0.07 16 27 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 28 H -0.29 -1.59 7.11 99.48 0.71 -0.88 16 29 H -0.29 -1.63 7.11 99.48 0.71 -0.92 16 30 H 0.17 -0.47 6.88 -2.91 -0.02 -0.49 16 31 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 32 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.12 0.88 7.67 -2.91 -0.02 0.86 16 34 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 35 H 0.13 -1.21 8.08 -2.39 -0.02 -1.23 16 36 H 0.14 -1.38 8.08 -2.39 -0.02 -1.40 16 37 H 0.42 -4.59 8.71 -92.71 -0.81 -5.39 16 38 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.13 -1.31 8.11 -2.39 -0.02 -1.33 16 40 H 0.40 -2.69 9.12 -74.06 -0.68 -3.36 16 41 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 44 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 Total: 0.00 -26.31 370.51 -1.38 -27.69 By element: Atomic # 1 Polarization: -12.87 SS G_CDS: -1.05 Total: -13.92 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 4.39 Total: 3.37 kcal Atomic # 7 Polarization: -0.78 SS G_CDS: -3.32 Total: -4.10 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -3.54 Total: -14.79 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 2.14 Total: 1.75 kcal Total: -26.31 -1.38 -27.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13287746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -26.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds