Wall clock time and date at job start Sat Mar 6 2021 19:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47146 * 2 1 4 4 C 1.50704 * 109.47038 * 240.00341 * 2 1 3 5 5 C 1.33749 * 125.11754 * 299.99674 * 4 2 1 6 6 C 1.37796 * 115.08064 * 180.02562 * 5 4 2 7 7 C 1.34982 * 114.70206 * 0.27144 * 6 5 4 8 8 C 1.47555 * 125.27396 * 179.69433 * 7 6 5 9 9 C 1.39823 * 120.00131 * 359.71939 * 8 7 6 10 10 C 1.36563 * 119.99847 * 179.75954 * 9 8 7 11 11 C 1.39831 * 120.00264 * 0.54262 * 10 9 8 12 12 C 1.47551 * 120.00454 * 179.69672 * 11 10 9 13 13 O 1.21592 * 120.00312 * 180.02562 * 12 11 10 14 14 N 1.34780 * 119.99828 * 0.02562 * 12 11 10 15 15 C 1.46507 * 119.99635 * 180.02562 * 14 12 11 16 16 H 1.08998 * 112.84860 * 336.19568 * 15 14 12 17 17 C 1.53780 * 113.61363 * 107.50574 * 15 14 12 18 18 C 1.53780 * 87.07999 * 89.11389 * 17 15 14 19 19 H 1.09000 * 113.61476 * 270.88063 * 18 17 15 20 20 O 1.42902 * 113.69297 * 139.99305 * 18 17 15 21 21 C 1.53772 * 87.08408 * 25.43028 * 18 17 15 22 22 C 1.39840 * 119.99292 * 359.71292 * 11 10 9 23 23 C 1.36557 * 120.00203 * 0.02562 * 22 11 10 24 24 S 1.75857 * 125.12111 * 120.00118 * 4 2 1 25 25 H 0.96701 * 114.00350 * 60.00484 * 1 2 3 26 26 H 1.08999 * 109.47410 * 120.00266 * 2 1 3 27 27 H 1.48495 * 110.00267 * 59.99900 * 3 2 1 28 28 H 1.48502 * 110.00317 * 181.32101 * 3 2 1 29 29 H 1.07996 * 122.45506 * 359.97438 * 5 4 2 30 30 H 1.08002 * 122.64548 * 179.97438 * 6 5 4 31 31 H 1.07991 * 119.99607 * 0.02675 * 9 8 7 32 32 H 1.08001 * 120.00040 * 180.23446 * 10 9 8 33 33 H 0.96993 * 120.00105 * 0.02562 * 14 12 11 34 34 H 1.08994 * 113.61092 * 203.66006 * 17 15 14 35 35 H 1.08996 * 113.61309 * 334.56773 * 17 15 14 36 36 H 0.96702 * 113.99913 * 82.45444 * 20 18 17 37 37 H 1.09006 * 113.61931 * 220.01900 * 21 18 17 38 38 H 1.09000 * 113.61459 * 89.11411 * 21 18 17 39 39 H 1.08000 * 119.99938 * 180.02562 * 22 11 10 40 40 H 1.08001 * 119.99880 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6721 -1.9847 -1.5430 6 6 2.2380 -2.4243 -2.7199 7 6 2.9726 -1.4990 -3.3728 8 6 3.6845 -1.7196 -4.6462 9 6 3.6328 -2.9707 -5.2685 10 6 4.2877 -3.1734 -6.4496 11 6 5.0193 -2.1331 -7.0309 12 6 5.7324 -2.3541 -8.3036 13 8 6.3690 -1.4496 -8.8089 14 7 5.6782 -3.5585 -8.9062 15 6 6.3868 -3.7779 -10.1696 16 1 6.5613 -2.8551 -10.7228 17 6 7.6384 -4.6602 -10.0287 18 6 6.7184 -5.8679 -10.2732 19 1 6.2820 -6.2760 -9.3615 20 8 7.2986 -6.8720 -11.1082 21 6 5.7850 -4.9049 -11.0255 22 6 5.0753 -0.8835 -6.4058 23 6 4.4161 -0.6793 -5.2274 24 16 2.9466 0.0114 -2.4718 25 1 -0.3934 0.4416 -0.7651 26 1 1.7924 -0.5139 0.8899 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7703 -0.0322 29 1 1.0645 -2.6226 -0.9182 30 1 2.1082 -3.4312 -3.0884 31 1 3.0715 -3.7753 -4.8173 32 1 4.2447 -4.1386 -6.9322 33 1 5.1702 -4.2798 -8.5034 34 1 8.3735 -4.5044 -10.8182 35 1 8.0767 -4.6401 -9.0309 36 1 7.8869 -7.4807 -10.6407 37 1 4.7269 -5.0824 -10.8325 38 1 6.0134 -4.8160 -12.0875 39 1 5.6400 -0.0799 -6.8549 40 1 4.4597 0.2857 -4.7445 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13308390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:47 Heat of formation + Delta-G solvation = -23.900448 kcal Electronic energy + Delta-G solvation = -24287.520213 eV Core-core repulsion = 20547.394492 eV Total energy + Delta-G solvation = -3740.125720 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.091 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67445 -40.45348 -39.51478 -38.90460 -37.36514 -36.42977 -34.30298 -33.16556 -32.17003 -30.44007 -27.39987 -26.80668 -25.57818 -24.50260 -23.94591 -23.36777 -21.92078 -20.63540 -20.24940 -19.27699 -18.82102 -18.31058 -17.63546 -17.11787 -16.65732 -16.39457 -16.28596 -16.21547 -16.07343 -15.76340 -15.48002 -15.20037 -14.94081 -14.50312 -14.44361 -14.32522 -13.90099 -13.64708 -13.60563 -13.44916 -13.28599 -13.12569 -12.80863 -12.59420 -12.44536 -12.29266 -12.06973 -11.57892 -11.51693 -11.19955 -10.82298 -10.77477 -10.54133 -10.21174 -10.19293 -9.55255 -9.03891 -5.16471 -0.90166 0.24052 0.33245 0.38240 0.76248 1.21748 1.51024 1.57882 1.84535 1.93378 1.93597 2.80908 3.27683 3.38457 3.42034 3.44294 3.61840 3.65745 3.69262 3.74829 3.81651 3.83759 4.01060 4.19194 4.30489 4.36762 4.46515 4.52278 4.56874 4.62135 4.71570 4.74070 4.89715 4.91789 4.92654 5.00603 5.01875 5.10415 5.21686 5.28482 5.31566 5.45501 5.48094 5.72308 6.38288 6.66299 6.86924 7.06579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.024 4.024 3 Si 0.717 3.283 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.160 4.160 8 C 0.008 3.992 9 C -0.108 4.108 10 C -0.067 4.067 11 C -0.151 4.151 12 C 0.560 3.440 13 O -0.579 6.579 14 N -0.694 5.694 15 C 0.116 3.884 16 H 0.089 0.911 17 C -0.180 4.180 18 C 0.081 3.919 19 H 0.105 0.895 20 O -0.579 6.579 21 C -0.131 4.131 22 C -0.063 4.063 23 C -0.129 4.129 24 S 0.121 5.879 25 H 0.397 0.603 26 H 0.123 0.877 27 H -0.269 1.269 28 H -0.268 1.268 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.416 0.584 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.396 0.604 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -4.570 1.155 5.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.620 3.380 4 C -0.339 4.339 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.277 4.277 8 C 0.006 3.994 9 C -0.128 4.128 10 C -0.085 4.085 11 C -0.154 4.154 12 C 0.349 3.651 13 O -0.460 6.460 14 N -0.346 5.346 15 C 0.010 3.990 16 H 0.107 0.893 17 C -0.219 4.219 18 C 0.023 3.977 19 H 0.123 0.877 20 O -0.388 6.388 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.147 4.147 24 S 0.389 5.611 25 H 0.247 0.753 26 H 0.140 0.860 27 H -0.195 1.195 28 H -0.194 1.194 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.073 -1.882 1.122 3.016 hybrid contribution -0.089 -2.069 0.955 2.280 sum -2.162 -3.951 2.076 4.960 Atomic orbital electron populations 1.86491 1.16517 1.82053 1.50416 1.24396 0.85300 1.08994 0.95100 0.94183 0.79511 0.76431 0.87860 1.25166 1.07027 0.99365 1.02296 1.20190 1.01273 0.94882 0.97708 1.20638 0.97564 1.01414 0.94952 1.23163 1.06546 0.98189 0.99790 1.18471 0.94962 0.94631 0.91367 1.21201 0.99962 0.96374 0.95262 1.21260 0.93736 0.98642 0.94867 1.19974 1.03125 0.96359 0.95992 1.18511 0.79744 0.82270 0.84554 1.90790 1.44401 1.44106 1.66699 1.45449 1.52338 1.13177 1.23627 1.21622 0.93586 0.98584 0.85214 0.89292 1.24129 0.97630 0.97072 1.03063 1.23503 0.93858 0.86340 0.94047 0.87700 1.86493 1.66434 1.45878 1.39972 1.23425 1.00442 0.92623 1.00437 1.20946 0.96593 0.96504 0.94156 1.21032 0.98238 0.99388 0.96070 1.84204 1.49139 1.12989 1.14786 0.75311 0.86002 1.19485 1.19391 0.82863 0.81534 0.82081 0.81907 0.74462 0.88995 0.90853 0.75396 0.88560 0.88363 0.85333 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.81 12.86 -148.98 -1.92 -1.10 16 2 C -0.02 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.72 -1.17 30.96 68.60 2.12 0.95 16 4 C -0.22 0.26 5.73 24.67 0.14 0.40 16 5 C -0.11 0.21 10.00 21.14 0.21 0.42 16 6 C -0.12 0.35 9.64 21.42 0.21 0.55 16 7 C -0.16 0.12 6.37 23.98 0.15 0.27 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.11 0.52 9.48 22.26 0.21 0.73 16 10 C -0.07 0.34 9.48 22.26 0.21 0.55 16 11 C -0.15 -0.23 5.88 -20.05 -0.12 -0.35 16 12 C 0.56 2.81 7.76 86.70 0.67 3.48 16 13 O -0.58 -8.26 15.93 -4.00 -0.06 -8.32 16 14 N -0.69 1.38 5.21 -443.17 -2.31 -0.93 16 15 C 0.12 -0.02 4.33 45.52 0.20 0.18 16 16 H 0.09 0.44 7.46 -2.39 -0.02 0.42 16 17 C -0.18 0.24 7.71 31.12 0.24 0.48 16 18 C 0.08 -0.34 5.09 31.12 0.16 -0.18 16 19 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 20 O -0.58 0.62 13.67 -148.98 -2.04 -1.42 16 21 C -0.13 0.42 7.66 31.12 0.24 0.66 16 22 C -0.06 -0.22 9.53 22.26 0.21 -0.01 16 23 C -0.13 -0.16 9.54 22.26 0.21 0.05 16 24 S 0.12 -0.08 19.46 -56.49 -1.10 -1.18 16 25 H 0.40 -3.58 8.70 -74.06 -0.64 -4.22 16 26 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H -0.27 -1.17 7.11 99.48 0.71 -0.47 16 28 H -0.27 -0.88 7.11 99.48 0.71 -0.18 16 29 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 30 H 0.17 -1.36 6.88 -2.91 -0.02 -1.38 16 31 H 0.16 -1.69 6.74 -2.92 -0.02 -1.71 16 32 H 0.16 -2.07 6.38 -2.91 -0.02 -2.09 16 33 H 0.42 -3.80 6.71 -92.71 -0.62 -4.42 16 34 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.40 -3.52 9.12 -74.06 -0.68 -4.19 16 37 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.13 0.67 7.64 -2.91 -0.02 0.65 16 40 H 0.13 -0.06 7.26 -2.91 -0.02 -0.08 16 Total: 0.00 -21.84 352.95 -3.05 -24.89 By element: Atomic # 1 Polarization: -19.48 SS G_CDS: -0.79 Total: -20.27 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.04 Total: 7.39 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.31 Total: -0.93 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -4.02 Total: -10.84 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.12 Total: 0.95 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.10 Total: -1.18 kcal Total: -21.84 -3.05 -24.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13308390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.991 kcal (2) G-P(sol) polarization free energy of solvation -21.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds