Wall clock time and date at job start Sat Mar 6 2021 19:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39206 * 119.92937 * 239.73104 * 4 2 1 6 6 C 1.50693 * 119.96798 * 359.97310 * 5 4 2 7 7 O 1.42901 * 109.47558 * 285.00483 * 6 5 4 8 8 Si 1.86297 * 109.47385 * 165.00253 * 6 5 4 9 9 C 1.37634 * 120.06756 * 179.72322 * 5 4 2 10 10 C 1.39785 * 119.92582 * 0.54888 * 9 5 4 11 11 C 1.47520 * 120.06381 * 179.70489 * 10 9 5 12 12 O 1.21594 * 120.00407 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00129 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00356 * 179.97438 * 13 11 10 15 15 H 1.08995 * 112.84538 * 336.19585 * 14 13 11 16 16 C 1.53780 * 113.61423 * 107.50359 * 14 13 11 17 17 C 1.53780 * 87.08339 * 89.11653 * 16 14 13 18 18 H 1.09008 * 113.68995 * 270.87207 * 17 16 14 19 19 O 1.42896 * 113.61642 * 139.98035 * 17 16 14 20 20 C 1.53780 * 113.61356 * 204.99932 * 14 13 11 21 21 C 1.39802 * 119.86563 * 359.72133 * 10 9 5 22 22 C 1.37590 * 119.93445 * 0.02562 * 21 10 9 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 27 27 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 29 29 H 1.09003 * 109.46911 * 45.00449 * 6 5 4 30 30 H 0.96696 * 114.00254 * 179.97438 * 7 6 5 31 31 H 1.48500 * 109.99877 * 298.68562 * 8 6 5 32 32 H 1.48498 * 109.99852 * 60.00006 * 8 6 5 33 33 H 1.07995 * 120.03437 * 180.25105 * 9 5 4 34 34 H 0.97002 * 119.99415 * 359.97438 * 13 11 10 35 35 H 1.08994 * 113.61160 * 203.66669 * 16 14 13 36 36 H 1.09000 * 113.61554 * 334.56266 * 16 14 13 37 37 H 0.96701 * 113.99960 * 82.49829 * 19 17 16 38 38 H 1.09006 * 113.61839 * 25.43215 * 20 14 13 39 39 H 1.08998 * 113.61321 * 156.24744 * 20 14 13 40 40 H 1.08003 * 120.03457 * 180.02562 * 21 10 9 41 41 H 1.07996 * 119.97007 * 180.02562 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7839 -1.8297 -0.8520 6 6 3.1270 -2.2377 0.5575 7 8 4.0944 -1.3327 1.0933 8 14 3.8280 -3.9638 0.5512 9 6 3.2740 -2.5528 -1.9156 10 6 2.9603 -2.1699 -3.2228 11 6 3.4893 -2.9389 -4.3652 12 8 4.1985 -3.9071 -4.1703 13 7 3.1864 -2.5682 -5.6252 14 6 3.7122 -3.3315 -6.7597 15 1 4.6207 -3.8818 -6.5150 16 6 2.6493 -4.1810 -7.4762 17 6 2.3768 -2.9527 -8.3604 18 1 1.6205 -2.2804 -7.9551 19 8 2.1538 -3.2747 -9.7346 20 6 3.8186 -2.5124 -8.0569 21 6 2.1445 -1.0566 -3.4454 22 6 1.6534 -0.3409 -2.3778 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 1.6461 1.8947 0.8901 27 1 3.0851 1.3422 0.0005 28 1 1.6460 1.8948 -0.8900 29 1 2.2271 -2.2133 1.1721 30 1 4.3623 -1.5349 2.0002 31 1 2.8200 -4.9194 0.0258 32 1 5.0554 -4.0104 -0.2834 33 1 3.9041 -3.4122 -1.7404 34 1 2.6203 -1.7961 -5.7807 35 1 3.0632 -5.0288 -8.0221 36 1 1.8083 -4.4561 -6.8397 37 1 1.2487 -3.5523 -9.9317 38 1 3.9216 -1.4403 -7.8891 39 1 4.5533 -2.9031 -8.7609 40 1 1.9001 -0.7586 -4.4543 41 1 1.0228 0.5190 -2.5491 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13422196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:38:54 Heat of formation + Delta-G solvation = -40.875694 kcal Electronic energy + Delta-G solvation = -23813.380237 eV Core-core repulsion = 20275.307200 eV Total energy + Delta-G solvation = -3538.073037 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96678 -41.03066 -39.69977 -37.75693 -37.31889 -36.51519 -34.25912 -32.82784 -31.34527 -28.53490 -26.95252 -26.88217 -26.72371 -25.04460 -23.47173 -22.92192 -21.42149 -20.74226 -19.10358 -18.54987 -18.33512 -17.86787 -17.52701 -16.72085 -16.52247 -16.38254 -16.05452 -15.96891 -15.71900 -15.34648 -15.04084 -14.88834 -14.62965 -14.17728 -13.90399 -13.78774 -13.60641 -13.51987 -13.37098 -13.08266 -12.90397 -12.76483 -12.64953 -12.51776 -12.21710 -12.07699 -11.60099 -11.37317 -10.84334 -10.41050 -10.30160 -10.20920 -9.90563 -9.55880 -5.07099 -0.54959 -0.01333 1.25876 1.44135 1.55045 1.77216 1.92727 2.44047 2.72778 3.20590 3.31376 3.34829 3.43273 3.55296 3.55703 3.73203 3.82097 3.93331 3.95194 4.06296 4.13184 4.36792 4.37740 4.41620 4.46069 4.56979 4.60667 4.63114 4.64391 4.73002 4.80866 4.84886 4.88923 4.92854 4.97436 4.98925 5.00925 5.13094 5.33727 5.41533 5.84383 6.20161 6.23524 6.81971 6.90782 6.95426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.518 5.518 3 C 0.034 3.966 4 C 0.144 3.856 5 C -0.082 4.082 6 C -0.044 4.044 7 O -0.553 6.553 8 Si 0.752 3.248 9 C -0.083 4.083 10 C -0.152 4.152 11 C 0.560 3.440 12 O -0.583 6.583 13 N -0.689 5.689 14 C 0.112 3.888 15 H 0.087 0.913 16 C -0.179 4.179 17 C 0.084 3.916 18 H 0.106 0.894 19 O -0.578 6.578 20 C -0.130 4.130 21 C -0.054 4.054 22 C -0.153 4.153 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.400 0.600 31 H -0.296 1.296 32 H -0.305 1.305 33 H 0.111 0.889 34 H 0.417 0.583 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.167 0.833 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 5.513 1.980 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.239 5.239 3 C -0.112 4.112 4 C 0.049 3.951 5 C -0.083 4.083 6 C -0.156 4.156 7 O -0.362 6.362 8 Si 0.662 3.338 9 C -0.102 4.102 10 C -0.155 4.155 11 C 0.349 3.651 12 O -0.464 6.464 13 N -0.342 5.342 14 C 0.007 3.993 15 H 0.105 0.895 16 C -0.218 4.218 17 C 0.025 3.975 18 H 0.124 0.876 19 O -0.386 6.386 20 C -0.168 4.168 21 C -0.073 4.073 22 C -0.173 4.173 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.251 0.749 31 H -0.224 1.224 32 H -0.234 1.234 33 H 0.128 0.872 34 H 0.257 0.743 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.184 0.816 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.884 4.369 1.455 6.713 hybrid contribution -0.985 0.325 -1.070 1.490 sum -5.870 4.693 0.385 7.525 Atomic orbital electron populations 1.22581 0.84230 1.03055 1.02429 1.59353 1.09426 1.15176 1.39956 1.22440 1.00531 0.86015 1.02207 1.18966 0.93586 0.92471 0.90088 1.19482 0.98649 0.95901 0.94245 1.24323 0.96467 1.02525 0.92238 1.86424 1.60024 1.54234 1.35506 0.94930 0.76947 0.74458 0.87513 1.21049 0.97808 0.98775 0.92565 1.19802 1.03925 0.99531 0.92292 1.18435 0.79432 0.83343 0.83897 1.90791 1.39767 1.29843 1.86007 1.45402 1.52184 1.32694 1.03873 1.21673 0.97895 0.94561 0.85185 0.89475 1.24134 0.99533 0.99153 0.99009 1.23473 0.97340 0.95335 0.81354 0.87632 1.86492 1.36865 1.89365 1.25915 1.23421 0.97216 1.01603 0.94552 1.21471 0.93132 0.91584 1.01158 1.21963 1.01698 1.01552 0.92038 0.91449 0.93817 0.89189 0.89350 0.92152 0.94034 0.88645 0.74890 1.22399 1.23410 0.87171 0.74332 0.88832 0.90889 0.75323 0.88530 0.88185 0.81561 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.34 127.69 1.19 1.09 16 2 N -0.52 0.12 4.20 -745.08 -3.13 -3.01 16 3 C 0.03 -0.08 9.32 127.69 1.19 1.11 16 4 C 0.14 0.37 4.69 38.47 0.18 0.55 16 5 C -0.08 -0.56 5.31 -19.78 -0.10 -0.66 16 6 C -0.04 -0.13 2.32 71.23 0.17 0.04 16 7 O -0.55 -1.14 12.86 -148.98 -1.92 -3.05 16 8 Si 0.75 2.95 30.18 68.60 2.07 5.02 16 9 C -0.08 -0.88 8.19 22.50 0.18 -0.70 16 10 C -0.15 -1.00 5.88 -20.08 -0.12 -1.12 16 11 C 0.56 5.22 7.76 86.69 0.67 5.89 16 12 O -0.58 -11.21 15.94 -4.01 -0.06 -11.27 16 13 N -0.69 -0.53 5.21 -443.22 -2.31 -2.84 16 14 C 0.11 0.22 4.32 45.52 0.20 0.42 16 15 H 0.09 0.65 7.46 -2.39 -0.02 0.63 16 16 C -0.18 -0.02 7.71 31.12 0.24 0.22 16 17 C 0.08 -0.27 5.09 31.12 0.16 -0.11 16 18 H 0.11 -0.87 8.14 -2.38 -0.02 -0.89 16 19 O -0.58 0.24 13.67 -148.98 -2.04 -1.80 16 20 C -0.13 0.24 7.66 31.12 0.24 0.48 16 21 C -0.05 0.09 9.53 22.50 0.21 0.30 16 22 C -0.15 0.26 8.57 22.36 0.19 0.45 16 23 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 24 H 0.04 -0.28 7.10 -2.39 -0.02 -0.29 16 25 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 26 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H 0.06 0.08 8.12 -2.39 -0.02 0.06 16 28 H 0.04 -0.19 7.45 -2.39 -0.02 -0.21 16 29 H 0.10 -0.02 7.77 -2.39 -0.02 -0.04 16 30 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 31 H -0.30 -3.11 7.11 99.48 0.71 -2.40 16 32 H -0.31 -4.11 6.76 99.48 0.67 -3.44 16 33 H 0.11 1.71 4.46 -2.91 -0.01 1.70 16 34 H 0.42 -2.87 6.72 -92.71 -0.62 -3.50 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.40 -3.31 9.12 -74.06 -0.68 -3.99 16 38 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.17 -1.67 6.39 -2.91 -0.02 -1.69 16 41 H 0.16 -1.14 7.01 -2.91 -0.02 -1.16 16 Total: 0.00 -26.03 337.09 -3.65 -29.68 By element: Atomic # 1 Polarization: -19.84 SS G_CDS: -0.86 Total: -20.70 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.60 Total: 7.97 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -5.44 Total: -5.85 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -4.02 Total: -16.13 kcal Atomic # 14 Polarization: 2.95 SS G_CDS: 2.07 Total: 5.02 kcal Total: -26.03 -3.65 -29.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13422196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.196 kcal (2) G-P(sol) polarization free energy of solvation -26.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds