Wall clock time and date at job start Sat Mar 6 2021 19:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.46867 * 2 1 4 4 C 1.50703 * 109.47264 * 119.99846 * 2 1 3 5 5 C 1.34171 * 125.43566 * 64.72053 * 4 2 1 6 6 C 1.47021 * 105.95500 * 179.86921 * 5 4 2 7 7 C 1.47373 * 127.19927 * 180.15180 * 6 5 4 8 8 O 1.21623 * 119.99641 * 0.25671 * 7 6 5 9 9 N 1.34777 * 120.00537 * 180.26174 * 7 6 5 10 10 C 1.46501 * 120.00073 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84673 * 334.67086 * 10 9 7 12 12 C 1.53779 * 113.61291 * 105.86199 * 10 9 7 13 13 C 1.54053 * 86.98510 * 89.16103 * 12 10 9 14 14 H 1.09001 * 113.68895 * 270.87750 * 13 12 10 15 15 O 1.42900 * 113.61929 * 139.97547 * 13 12 10 16 16 C 1.53777 * 113.61405 * 203.47079 * 10 9 7 17 17 C 1.36420 * 105.61091 * 0.38352 * 6 5 4 18 18 O 1.33656 * 108.39754 * 359.77065 * 17 6 5 19 19 H 0.96691 * 114.00079 * 59.99872 * 1 2 3 20 20 H 1.09001 * 109.47103 * 240.00307 * 2 1 3 21 21 H 1.48504 * 110.00174 * 298.67905 * 3 2 1 22 22 H 1.48492 * 110.00227 * 59.99933 * 3 2 1 23 23 H 1.08000 * 127.02489 * 359.97438 * 5 4 2 24 24 H 0.96994 * 119.99431 * 359.97438 * 9 7 6 25 25 H 1.08995 * 113.61969 * 203.66534 * 12 10 9 26 26 H 1.09000 * 113.61789 * 334.57074 * 12 10 9 27 27 H 0.96708 * 113.99958 * 82.51148 * 15 13 12 28 28 H 1.09001 * 113.61664 * 25.43141 * 16 10 9 29 29 H 1.08998 * 113.61364 * 156.25651 * 16 10 9 30 30 H 1.08000 * 125.80199 * 179.79836 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7506 -2.0109 1.5062 6 6 2.4128 -2.2462 2.7976 7 6 2.5011 -3.5192 3.5348 8 8 1.9938 -4.5245 3.0752 9 7 3.1438 -3.5694 4.7184 10 6 3.2310 -4.8348 5.4515 11 1 2.4203 -5.5216 5.2082 12 6 4.6245 -5.4830 5.3978 13 6 4.9633 -4.6671 6.6598 14 1 5.3722 -3.6795 6.4461 15 8 5.7350 -5.3915 7.6199 16 6 3.4555 -4.6572 6.9624 17 6 2.9240 -1.0385 3.1734 18 8 2.6261 -0.1417 2.2281 19 1 -0.3933 0.4417 -0.7650 20 1 1.7924 -0.5138 -0.8900 21 1 1.5879 2.4586 -1.2243 22 1 1.5615 2.4679 1.2084 23 1 1.2272 -2.7372 0.9020 24 1 3.5486 -2.7677 5.0848 25 1 4.6118 -6.5601 5.5646 26 1 5.2061 -5.1962 4.5216 27 1 6.6842 -5.4013 7.4350 28 1 3.0940 -3.7042 7.3485 29 1 3.1225 -5.5083 7.5563 30 1 3.4760 -0.8407 4.0803 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_13456056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:02 Heat of formation + Delta-G solvation = -68.432458 kcal Electronic energy + Delta-G solvation = -16772.972044 eV Core-core repulsion = 13730.824392 eV Total energy + Delta-G solvation = -3042.147652 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.74271 -41.25922 -39.48745 -38.08776 -36.40228 -34.41966 -33.50619 -31.79045 -26.86051 -26.80189 -25.91557 -24.30018 -22.29308 -21.13477 -20.61903 -18.99887 -18.77545 -18.55622 -17.38718 -17.17407 -16.97473 -16.35714 -16.05392 -15.81856 -15.73732 -15.21269 -14.75913 -14.21885 -14.06014 -13.77017 -13.57997 -13.43754 -12.88412 -12.77641 -12.43937 -12.14524 -11.53007 -11.31292 -10.99739 -10.76401 -10.65690 -10.22818 -9.80059 -4.92529 0.22347 0.76993 1.17373 1.45788 1.74260 1.91812 1.96819 2.18424 3.27998 3.32660 3.42774 3.47086 3.55464 3.64166 3.80809 3.91770 4.02961 4.24432 4.37711 4.49518 4.57860 4.72093 4.75915 4.86594 4.91610 4.93378 5.02576 5.10603 5.45502 5.82909 6.40181 6.49808 6.88857 7.08597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.052 4.052 3 Si 0.787 3.213 4 C -0.015 4.015 5 C -0.151 4.151 6 C -0.269 4.269 7 C 0.591 3.409 8 O -0.585 6.585 9 N -0.692 5.692 10 C 0.116 3.884 11 H 0.084 0.916 12 C -0.180 4.180 13 C 0.083 3.917 14 H 0.109 0.891 15 O -0.580 6.580 16 C -0.131 4.131 17 C 0.069 3.931 18 O -0.167 6.167 19 H 0.405 0.595 20 H 0.122 0.878 21 H -0.269 1.269 22 H -0.303 1.303 23 H 0.146 0.854 24 H 0.418 0.582 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.396 0.604 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 5.343 0.095 8.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.159 4.159 3 Si 0.690 3.310 4 C -0.063 4.063 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.380 3.620 8 O -0.466 6.466 9 N -0.344 5.344 10 C 0.011 3.989 11 H 0.103 0.897 12 C -0.219 4.219 13 C 0.024 3.976 14 H 0.127 0.873 15 O -0.389 6.389 16 C -0.169 4.169 17 C -0.001 4.001 18 O -0.063 6.063 19 H 0.258 0.742 20 H 0.139 0.861 21 H -0.194 1.194 22 H -0.231 1.231 23 H 0.164 0.836 24 H 0.256 0.744 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.247 0.753 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 5.087 5.361 0.558 7.411 hybrid contribution -0.797 -0.390 -0.638 1.093 sum 4.289 4.971 -0.080 6.566 Atomic orbital electron populations 1.86524 1.17719 1.81063 1.51758 1.24218 0.84532 1.13465 0.93717 0.93561 0.89908 0.70454 0.77108 1.21352 1.00927 0.91741 0.92252 1.22557 1.01910 0.96133 0.96454 1.21414 1.11477 0.94931 0.99576 1.17496 0.76966 0.86876 0.80660 1.90794 1.49057 1.37630 1.69079 1.45301 1.56491 1.12437 1.20145 1.21604 0.98549 0.86204 0.92590 0.89729 1.24173 0.96613 1.01372 0.99716 1.23560 0.91532 0.95126 0.87336 0.87340 1.86493 1.24485 1.76257 1.51623 1.23414 0.94723 1.04778 0.93974 1.25362 0.96956 0.84862 0.92952 1.83702 1.57167 1.39064 1.26334 0.74223 0.86086 1.19428 1.23089 0.83642 0.74384 0.89151 0.90714 0.75345 0.88439 0.88490 0.71733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.90 12.86 -148.98 -1.92 -2.82 16 2 C -0.05 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.79 -2.81 32.09 68.60 2.20 -0.61 16 4 C -0.01 -0.04 6.22 24.76 0.15 0.11 16 5 C -0.15 -1.01 10.90 23.65 0.26 -0.76 16 6 C -0.27 -0.92 6.31 -18.99 -0.12 -1.04 16 7 C 0.59 3.94 7.81 86.65 0.68 4.62 16 8 O -0.58 -10.04 16.60 -4.10 -0.07 -10.11 16 9 N -0.69 1.33 5.25 -443.34 -2.33 -1.00 16 10 C 0.12 0.03 4.30 45.52 0.20 0.22 16 11 H 0.08 0.51 7.50 -2.39 -0.02 0.49 16 12 C -0.18 0.23 7.73 31.21 0.24 0.47 16 13 C 0.08 -0.38 5.10 31.21 0.16 -0.22 16 14 H 0.11 -1.10 8.14 -2.39 -0.02 -1.11 16 15 O -0.58 0.74 13.67 -148.98 -2.04 -1.30 16 16 C -0.13 0.42 7.65 31.12 0.24 0.66 16 17 C 0.07 -0.33 11.61 67.40 0.78 0.45 16 18 O -0.17 0.07 8.90 4.51 0.04 0.11 16 19 H 0.41 -3.11 8.74 -74.06 -0.65 -3.75 16 20 H 0.12 -0.79 7.96 -2.39 -0.02 -0.81 16 21 H -0.27 0.29 7.11 99.48 0.71 1.00 16 22 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 23 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 24 H 0.42 -4.39 7.67 -92.71 -0.71 -5.11 16 25 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.40 -3.65 9.12 -74.05 -0.68 -4.32 16 28 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.27 -4.53 7.47 -2.91 -0.02 -4.55 16 Total: 0.00 -27.38 271.42 -2.11 -29.49 By element: Atomic # 1 Polarization: -17.79 SS G_CDS: -0.80 Total: -18.59 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 2.80 Total: 4.80 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -2.33 Total: -1.00 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -3.98 Total: -14.11 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.20 Total: -0.61 kcal Total: -27.38 -2.11 -29.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_13456056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.938 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds