Wall clock time and date at job start Sat Mar 6 2021 19:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47170 * 119.99778 * 2 1 3 5 5 C 1.31113 * 118.55070 * 249.97636 * 4 2 1 6 6 N 1.38919 * 121.85117 * 179.61601 * 5 4 2 7 7 C 1.47026 * 118.88457 * 13.29753 * 6 5 4 8 8 C 1.50701 * 109.82589 * 196.73370 * 7 6 5 9 9 O 1.21281 * 119.99803 * 20.00103 * 8 7 6 10 10 N 1.34773 * 120.00386 * 199.99905 * 8 7 6 11 11 C 1.46499 * 120.00153 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84977 * 23.80725 * 11 10 8 13 13 C 1.53785 * 113.61625 * 155.00080 * 11 10 8 14 14 C 1.53777 * 87.08066 * 139.98266 * 13 11 10 15 15 H 1.09004 * 113.61067 * 220.02134 * 14 13 11 16 16 O 1.42898 * 113.61558 * 89.12008 * 14 13 11 17 17 C 1.53777 * 87.08145 * 334.56595 * 14 13 11 18 18 C 1.53478 * 107.52531 * 316.28080 * 7 6 5 19 19 C 1.50207 * 118.54398 * 70.00204 * 4 2 1 20 20 H 0.96701 * 113.99742 * 59.99782 * 1 2 3 21 21 H 1.09002 * 109.47231 * 240.00219 * 2 1 3 22 22 H 1.48502 * 110.00010 * 59.99615 * 3 2 1 23 23 H 1.48494 * 110.00052 * 181.32044 * 3 2 1 24 24 H 1.08001 * 119.07616 * 359.60030 * 5 4 2 25 25 H 0.96999 * 120.55913 * 193.27539 * 6 5 4 26 26 H 1.08997 * 109.82394 * 75.86981 * 7 6 5 27 27 H 0.96997 * 119.99992 * 359.97438 * 10 8 7 28 28 H 1.08996 * 113.61325 * 254.53650 * 13 11 10 29 29 H 1.09003 * 113.61160 * 25.43050 * 13 11 10 30 30 H 0.96701 * 114.00103 * 179.97438 * 16 14 13 31 31 H 1.08997 * 113.62022 * 270.88333 * 17 14 13 32 32 H 1.09002 * 113.61481 * 139.98070 * 17 14 13 33 33 H 1.08998 * 109.75792 * 301.37272 * 18 7 6 34 34 H 1.09003 * 109.46777 * 180.83137 * 18 7 6 35 35 H 1.09002 * 109.32969 * 320.31163 * 19 4 2 36 36 H 1.08996 * 109.33365 * 79.96493 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.5120 -0.0029 2.1693 6 7 2.9931 -0.5858 3.3348 7 6 3.1180 -2.0494 3.3977 8 6 3.2538 -2.4897 4.8326 9 8 2.8942 -1.7557 5.7287 10 7 3.7748 -3.6989 5.1201 11 6 3.9073 -4.1266 6.5150 12 1 3.2125 -3.6161 7.1821 13 6 3.9217 -5.6541 6.6924 14 6 5.0153 -5.4418 7.7524 15 1 5.8114 -6.1855 7.7135 16 8 4.5031 -5.2439 9.0717 17 6 5.3590 -4.1329 7.0222 18 6 1.8443 -2.6487 2.7860 19 6 1.7451 -2.1977 1.3269 20 1 -0.3933 0.4417 -0.7650 21 1 1.7924 -0.5138 -0.8900 22 1 1.5615 2.4680 1.2085 23 1 3.5346 1.7703 -0.0322 24 1 2.6195 1.0630 2.0325 25 1 3.2428 -0.0365 4.0943 26 1 3.9902 -2.3708 2.8285 27 1 4.0620 -4.2861 4.4035 28 1 2.9928 -6.0554 7.0975 29 1 4.2674 -6.1928 5.8101 30 1 5.1862 -5.1102 9.7429 31 1 6.0977 -4.2556 6.2301 32 1 5.5905 -3.3060 7.6937 33 1 0.9712 -2.2994 3.3372 34 1 1.8972 -3.7365 2.8301 35 1 0.7647 -2.4649 0.9324 36 1 2.5176 -2.6967 0.7418 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_15413834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:08 Heat of formation + Delta-G solvation = -62.379514 kcal Electronic energy + Delta-G solvation = -19174.307383 eV Core-core repulsion = 16047.291770 eV Total energy + Delta-G solvation = -3127.015612 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59941 -40.40008 -39.14775 -37.32498 -36.33122 -34.17690 -33.30116 -32.81058 -27.83965 -26.93046 -25.63612 -25.05110 -23.48020 -21.78278 -21.09105 -19.24043 -19.11754 -18.52138 -18.15622 -17.53395 -17.29510 -16.50647 -16.23663 -15.71664 -15.51336 -15.23176 -14.71829 -14.61876 -14.43973 -14.25078 -13.79509 -13.68763 -13.58907 -13.29367 -13.22427 -13.05137 -12.43158 -12.34852 -11.88238 -11.62625 -11.58610 -11.31526 -11.01980 -10.73304 -10.16126 -10.08449 -8.48482 -4.90075 1.29378 1.40186 1.44028 1.69443 1.84700 2.02479 2.57029 2.89879 3.29893 3.47345 3.54180 3.62321 3.66347 3.69497 3.92965 3.97105 3.99346 4.18595 4.33819 4.40140 4.44864 4.51326 4.60907 4.65906 4.72381 4.80108 4.86669 4.97751 5.01826 5.16192 5.25538 5.37913 5.54397 6.18730 6.36319 6.54725 6.75770 6.82506 7.05593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.045 4.045 3 Si 0.662 3.338 4 C -0.232 4.232 5 C 0.135 3.865 6 N -0.732 5.732 7 C 0.136 3.864 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.717 5.717 11 C 0.128 3.872 12 H 0.120 0.880 13 C -0.141 4.141 14 C 0.082 3.918 15 H 0.077 0.923 16 O -0.550 6.550 17 C -0.185 4.185 18 C -0.126 4.126 19 C -0.053 4.053 20 H 0.376 0.624 21 H 0.063 0.937 22 H -0.254 1.254 23 H -0.258 1.258 24 H 0.125 0.875 25 H 0.409 0.591 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.385 0.615 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -2.902 -4.114 6.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.157 4.157 3 Si 0.565 3.435 4 C -0.242 4.242 5 C 0.015 3.985 6 N -0.365 5.365 7 C 0.026 3.974 8 C 0.299 3.701 9 O -0.403 6.403 10 N -0.368 5.368 11 C 0.024 3.976 12 H 0.138 0.862 13 C -0.179 4.179 14 C 0.022 3.978 15 H 0.094 0.906 16 O -0.356 6.356 17 C -0.224 4.224 18 C -0.164 4.164 19 C -0.090 4.090 20 H 0.223 0.777 21 H 0.081 0.919 22 H -0.179 1.179 23 H -0.183 1.183 24 H 0.142 0.858 25 H 0.246 0.754 26 H 0.108 0.892 27 H 0.238 0.762 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.234 0.766 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.145 -2.274 -2.795 4.783 hybrid contribution 0.954 -0.465 0.378 1.126 sum 4.098 -2.739 -2.417 5.490 Atomic orbital electron populations 1.86513 1.18068 1.81595 1.49307 1.24360 0.85062 1.08584 0.97689 0.95497 0.80825 0.79491 0.87676 1.20044 1.09703 0.96362 0.98055 1.20252 0.95348 0.95941 0.86984 1.44223 1.72811 1.04230 1.15240 1.21028 1.00128 0.83343 0.92874 1.20630 0.76678 0.81863 0.90967 1.90743 1.48106 1.53227 1.48272 1.45959 1.64019 1.18019 1.08834 1.22555 0.97606 0.94938 0.82514 0.86184 1.23464 1.00474 0.95775 0.98152 1.22471 0.96231 0.96045 0.83068 0.90559 1.86477 1.37602 1.94782 1.16762 1.24174 0.97606 0.99480 1.01114 1.21855 0.96648 1.00460 0.97480 1.19991 1.02612 0.91729 0.94717 0.77682 0.91880 1.17915 1.18289 0.85778 0.75422 0.89196 0.76244 0.89514 0.88157 0.76647 0.88913 0.90281 0.90333 0.90168 0.89952 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.67 12.86 -35.23 -0.45 -1.13 16 2 C -0.04 -0.03 2.80 36.00 0.10 0.07 16 3 Si 0.66 -0.15 29.91 -169.99 -5.08 -5.23 16 4 C -0.23 -0.56 5.40 -101.34 -0.55 -1.10 16 5 C 0.14 0.39 9.62 -16.08 -0.15 0.23 16 6 N -0.73 -1.81 5.46 -55.38 -0.30 -2.11 16 7 C 0.14 0.09 3.36 -68.55 -0.23 -0.14 16 8 C 0.51 1.01 7.08 -10.99 -0.08 0.93 16 9 O -0.53 -3.28 15.70 5.56 0.09 -3.19 16 10 N -0.72 0.65 5.35 -53.02 -0.28 0.37 16 11 C 0.13 0.01 4.17 -67.12 -0.28 -0.27 16 12 H 0.12 0.37 7.46 -51.93 -0.39 -0.01 16 13 C -0.14 0.23 7.66 -25.92 -0.20 0.03 16 14 C 0.08 -0.12 5.28 -25.92 -0.14 -0.25 16 15 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 16 O -0.55 -0.11 13.59 -35.23 -0.48 -0.59 16 17 C -0.18 0.21 7.71 -25.92 -0.20 0.01 16 18 C -0.13 -0.06 5.46 -26.46 -0.14 -0.21 16 19 C -0.05 -0.05 5.86 -28.10 -0.16 -0.22 16 20 H 0.38 -1.38 8.74 45.56 0.40 -0.98 16 21 H 0.06 -0.05 7.96 -51.93 -0.41 -0.46 16 22 H -0.25 -0.77 6.89 56.52 0.39 -0.38 16 23 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 24 H 0.13 0.33 4.34 -52.49 -0.23 0.10 16 25 H 0.41 1.10 8.12 -40.82 -0.33 0.77 16 26 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.40 -1.60 8.73 -40.82 -0.36 -1.95 16 28 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 -0.38 8.12 -51.93 -0.42 -0.81 16 30 H 0.39 -1.47 9.12 45.56 0.42 -1.05 16 31 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 LS Contribution 297.13 15.07 4.48 4.48 Total: 0.00 -9.07 297.13 -8.41 -17.48 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: -4.34 Total: -9.16 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.03 Total: -0.92 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -0.59 Total: -1.74 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.84 Total: -4.91 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: -5.08 Total: -5.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -9.07 -8.41 -17.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_15413834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.897 kcal (2) G-P(sol) polarization free energy of solvation -9.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds