Wall clock time and date at job start Sat Mar 6 2021 19:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86297 * 109.47241 * 2 1 4 4 C 1.50705 * 109.47388 * 120.00139 * 2 1 3 5 5 C 1.38709 * 120.02672 * 75.01909 * 4 2 1 6 6 O 1.35895 * 120.05826 * 359.96119 * 5 4 2 7 7 C 1.42904 * 117.00128 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00089 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99557 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85470 * 25.33033 * 11 10 8 13 13 C 1.53784 * 113.61539 * 156.53125 * 11 10 8 14 14 C 1.53771 * 87.08551 * 139.97650 * 13 11 10 15 15 H 1.09002 * 113.61943 * 219.93285 * 14 13 11 16 16 O 1.42902 * 113.61705 * 89.11417 * 14 13 11 17 17 C 1.53782 * 113.61273 * 254.13343 * 11 10 8 18 18 C 1.38759 * 119.88803 * 179.97438 * 5 4 2 19 19 C 1.38126 * 119.94113 * 359.97438 * 18 5 4 20 20 C 1.38290 * 120.05768 * 359.97438 * 19 18 5 21 21 C 1.38164 * 120.02639 * 255.00220 * 4 2 1 22 22 H 0.96696 * 114.00364 * 60.00149 * 1 2 3 23 23 H 1.09006 * 109.47457 * 240.00019 * 2 1 3 24 24 H 1.48500 * 110.00138 * 298.68201 * 3 2 1 25 25 H 1.48501 * 110.00014 * 59.99854 * 3 2 1 26 26 H 1.09000 * 109.46735 * 300.00020 * 7 6 5 27 27 H 1.09002 * 109.46782 * 59.99820 * 7 6 5 28 28 H 0.97002 * 120.00324 * 359.97438 * 10 8 7 29 29 H 1.09004 * 113.61005 * 254.53257 * 13 11 10 30 30 H 1.08999 * 113.61595 * 25.33886 * 13 11 10 31 31 H 0.96697 * 114.00347 * 180.02562 * 16 14 13 32 32 H 1.09002 * 113.61368 * 334.56736 * 17 11 10 33 33 H 1.08999 * 113.61852 * 105.47265 * 17 11 10 34 34 H 1.07998 * 120.02758 * 179.97438 * 18 5 4 35 35 H 1.07995 * 119.97120 * 179.97438 * 19 18 5 36 36 H 1.07995 * 119.94278 * 180.27458 * 20 19 18 37 37 H 1.07997 * 119.97418 * 0.04002 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8701 -2.0941 1.3067 6 8 1.3563 -2.8107 0.2727 7 6 1.3241 -4.2317 0.4208 8 6 0.7257 -4.8521 -0.8154 9 8 0.3621 -4.1469 -1.7326 10 7 0.5936 -6.1906 -0.9010 11 6 0.0124 -6.7938 -2.1030 12 1 0.1306 -6.1702 -2.9891 13 6 0.4287 -8.2582 -2.3203 14 6 -1.0202 -8.5224 -2.7623 15 1 -1.4210 -9.4697 -2.4016 16 8 -1.2373 -8.3247 -4.1608 17 6 -1.4216 -7.3113 -1.9007 18 6 2.3340 -2.7453 2.4408 19 6 2.8559 -2.0146 3.4904 20 6 2.9169 -0.6353 3.4114 21 6 2.4537 0.0159 2.2833 22 1 -0.3934 0.4416 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5879 2.4585 -1.2242 25 1 1.5614 2.4679 1.2085 26 1 2.3384 -4.6054 0.5608 27 1 0.7177 -4.4929 1.2880 28 1 0.8840 -6.7547 -0.1672 29 1 1.1597 -8.3905 -3.1180 30 1 0.7073 -8.7739 -1.4013 31 1 -2.1469 -8.4890 -4.4448 32 1 -1.6512 -7.5681 -0.8665 33 1 -2.1824 -6.6803 -2.3602 34 1 2.2870 -3.8225 2.5027 35 1 3.2167 -2.5209 4.3734 36 1 3.3294 -0.0662 4.2313 37 1 2.5013 1.0932 2.2246 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_2989392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:15 Heat of formation + Delta-G solvation = -84.841330 kcal Electronic energy + Delta-G solvation = -21563.493589 eV Core-core repulsion = 18081.333016 eV Total energy + Delta-G solvation = -3482.160573 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61165 -41.00669 -39.69924 -38.31202 -37.44139 -36.28193 -34.00471 -32.81911 -31.24231 -29.47617 -26.91291 -26.55460 -25.41183 -23.42125 -22.42448 -21.65284 -20.98558 -19.32430 -18.67919 -18.35743 -18.07568 -17.41571 -17.25588 -16.91880 -16.76180 -16.23250 -15.60509 -15.46287 -15.35116 -15.00772 -14.82230 -14.50077 -13.84929 -13.76754 -13.71608 -13.61069 -13.52129 -13.21739 -12.96549 -12.65354 -12.34447 -12.13172 -11.72840 -11.64808 -11.57655 -11.01209 -10.76840 -10.25269 -10.13499 -9.94009 -9.16291 -4.88492 0.26193 0.45973 1.38869 1.48670 1.49996 1.67074 2.02139 2.59070 2.69536 2.91565 3.30962 3.48308 3.53450 3.56905 3.68683 3.76359 3.87414 3.91671 3.94438 3.99999 4.13854 4.29155 4.36491 4.42246 4.46845 4.53743 4.67560 4.68201 4.82138 4.89774 5.00026 5.01099 5.29398 5.38319 5.40209 5.53249 5.73430 6.25928 6.40380 6.56757 6.65509 7.11369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.067 4.067 3 Si 0.686 3.314 4 C -0.101 4.101 5 C 0.151 3.849 6 O -0.280 6.280 7 C 0.039 3.961 8 C 0.517 3.483 9 O -0.509 6.509 10 N -0.720 5.720 11 C 0.132 3.868 12 H 0.120 0.880 13 C -0.140 4.140 14 C 0.082 3.918 15 H 0.077 0.923 16 O -0.551 6.551 17 C -0.185 4.185 18 C -0.212 4.212 19 C -0.073 4.073 20 C -0.151 4.151 21 C -0.078 4.078 22 H 0.377 0.623 23 H 0.076 0.924 24 H -0.261 1.261 25 H -0.255 1.255 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.402 0.598 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.386 0.614 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -4.804 3.287 6.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.176 4.176 3 Si 0.587 3.413 4 C -0.101 4.101 5 C 0.105 3.895 6 O -0.191 6.191 7 C -0.040 4.040 8 C 0.301 3.699 9 O -0.383 6.383 10 N -0.373 5.373 11 C 0.027 3.973 12 H 0.138 0.862 13 C -0.178 4.178 14 C 0.022 3.978 15 H 0.094 0.906 16 O -0.357 6.357 17 C -0.224 4.224 18 C -0.231 4.231 19 C -0.091 4.091 20 C -0.169 4.169 21 C -0.096 4.096 22 H 0.225 0.775 23 H 0.094 0.906 24 H -0.186 1.186 25 H -0.180 1.180 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.236 0.764 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.686 -3.515 2.979 5.333 hybrid contribution -1.567 -0.871 0.132 1.798 sum 1.119 -4.386 3.111 5.492 Atomic orbital electron populations 1.86595 1.17685 1.80124 1.49344 1.24650 0.84609 1.10280 0.98083 0.95213 0.91422 0.74662 0.79991 1.18599 1.04440 0.90206 0.96894 1.18785 0.93144 0.90807 0.86780 1.86209 1.77521 1.16815 1.38594 1.22483 1.02506 0.81468 0.97556 1.20076 0.78948 0.82620 0.88230 1.90783 1.47331 1.61031 1.39129 1.45846 1.64685 1.06253 1.20551 1.22541 0.92781 0.93248 0.88708 0.86169 1.23455 0.96798 0.95188 1.02367 1.22507 0.96874 0.96638 0.81794 0.90557 1.86472 1.34599 1.92443 1.22142 1.24214 0.98184 0.98717 1.01319 1.21262 1.06593 1.00387 0.94856 1.21015 0.96362 0.94082 0.97644 1.21050 1.02822 0.94573 0.98482 1.20989 0.96528 0.99872 0.92166 0.77491 0.90554 1.18645 1.18011 0.88764 0.88883 0.76350 0.89488 0.88162 0.76625 0.88909 0.90182 0.85263 0.85322 0.85224 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -2.40 12.86 -35.23 -0.45 -2.85 16 2 C -0.07 -0.20 2.37 36.01 0.09 -0.11 16 3 Si 0.69 0.51 30.20 -169.99 -5.13 -4.63 16 4 C -0.10 -0.33 5.30 -104.47 -0.55 -0.88 16 5 C 0.15 0.47 6.66 -39.21 -0.26 0.21 16 6 O -0.28 -1.14 9.00 -39.32 -0.35 -1.49 16 7 C 0.04 0.00 5.22 36.01 0.19 0.19 16 8 C 0.52 1.14 7.91 -10.99 -0.09 1.06 16 9 O -0.51 -3.75 16.12 -14.35 -0.23 -3.98 16 10 N -0.72 0.80 5.36 -53.02 -0.28 0.52 16 11 C 0.13 0.01 4.15 -67.12 -0.28 -0.27 16 12 H 0.12 0.36 7.50 -51.93 -0.39 -0.03 16 13 C -0.14 0.26 7.66 -25.92 -0.20 0.06 16 14 C 0.08 -0.12 5.28 -25.83 -0.14 -0.26 16 15 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 16 O -0.55 -0.08 13.59 -35.23 -0.48 -0.56 16 17 C -0.19 0.19 7.72 -25.83 -0.20 -0.01 16 18 C -0.21 -0.14 9.04 -39.43 -0.36 -0.50 16 19 C -0.07 0.00 10.04 -39.60 -0.40 -0.40 16 20 C -0.15 -0.06 10.04 -39.56 -0.40 -0.46 16 21 C -0.08 -0.13 8.66 -39.61 -0.34 -0.47 16 22 H 0.38 0.28 8.74 45.56 0.40 0.68 16 23 H 0.08 0.23 7.83 -51.93 -0.41 -0.18 16 24 H -0.26 -0.74 7.11 56.52 0.40 -0.34 16 25 H -0.26 -0.75 6.75 56.52 0.38 -0.37 16 26 H 0.09 -0.27 7.66 -51.93 -0.40 -0.67 16 27 H 0.09 -0.22 7.66 -51.93 -0.40 -0.61 16 28 H 0.40 -1.88 8.71 -40.82 -0.36 -2.23 16 29 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.10 -0.42 8.11 -51.93 -0.42 -0.84 16 31 H 0.39 -1.48 9.12 45.56 0.42 -1.06 16 32 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 33 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.13 -0.27 6.30 -52.49 -0.33 -0.60 16 35 H 0.13 -0.30 8.06 -52.49 -0.42 -0.73 16 36 H 0.13 -0.22 8.06 -52.49 -0.42 -0.65 16 37 H 0.13 0.03 4.90 -52.49 -0.26 -0.22 16 LS Contribution 316.24 15.07 4.77 4.77 Total: 0.00 -11.10 316.24 -9.00 -20.10 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -3.90 Total: -10.03 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.94 Total: -1.84 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -0.28 Total: 0.52 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -1.52 Total: -8.88 kcal Atomic # 14 Polarization: 0.51 SS G_CDS: -5.13 Total: -4.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -11.10 -9.00 -20.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_2989392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.743 kcal (2) G-P(sol) polarization free energy of solvation -11.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds