Wall clock time and date at job start Sat Mar 6 2021 19:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47185 * 119.99778 * 2 1 3 5 5 C 1.38274 * 119.94301 * 65.00307 * 4 2 1 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 2 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35898 * 120.05510 * 180.29870 * 7 6 5 9 9 C 1.42901 * 117.00084 * 0.27943 * 8 7 6 10 10 C 1.53002 * 109.47063 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47304 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99904 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00026 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85008 * 23.79845 * 14 13 11 16 16 C 1.53773 * 113.61366 * 155.00006 * 14 13 11 17 17 C 1.53784 * 87.08177 * 139.97568 * 16 14 13 18 18 H 1.08991 * 113.61739 * 220.01645 * 17 16 14 19 19 O 1.42909 * 113.60997 * 89.11361 * 17 16 14 20 20 C 1.53778 * 87.08196 * 334.56893 * 17 16 14 21 21 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 22 22 C 1.38149 * 119.94512 * 359.70901 * 21 7 6 23 23 H 0.96696 * 114.00119 * 59.99558 * 1 2 3 24 24 H 1.08998 * 109.47382 * 240.00321 * 2 1 3 25 25 H 1.48498 * 109.99969 * 298.68280 * 3 2 1 26 26 H 1.48503 * 110.00048 * 59.99824 * 3 2 1 27 27 H 1.08002 * 119.96836 * 359.97438 * 5 4 2 28 28 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 29 29 H 1.08998 * 109.47080 * 299.99770 * 9 8 7 30 30 H 1.08996 * 109.47179 * 59.99778 * 9 8 7 31 31 H 1.08998 * 109.47210 * 299.99967 * 10 9 8 32 32 H 1.09004 * 109.46922 * 60.00270 * 10 9 8 33 33 H 0.96993 * 120.00095 * 0.02562 * 13 11 10 34 34 H 1.09002 * 113.61758 * 254.52623 * 16 14 13 35 35 H 1.09006 * 113.61740 * 25.34679 * 16 14 13 36 36 H 0.96697 * 113.99373 * 180.02562 * 19 17 16 37 37 H 1.08999 * 113.61010 * 270.88521 * 20 17 16 38 38 H 1.08994 * 113.61919 * 139.97409 * 20 17 16 39 39 H 1.07997 * 120.02650 * 179.67529 * 21 7 6 40 40 H 1.07997 * 119.96847 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1385 -2.7127 2.5270 7 6 2.8535 -2.0145 3.4893 8 8 3.3068 -2.6552 4.5987 9 6 3.0162 -4.0502 4.7065 10 6 3.6026 -4.5940 6.0109 11 6 3.2956 -6.0649 6.1249 12 8 2.6698 -6.6235 5.2489 13 7 3.7163 -6.7598 7.2003 14 6 3.4183 -8.1900 7.3109 15 1 3.2393 -8.6610 6.3444 16 6 4.4122 -8.9596 8.1966 17 6 3.2027 -9.7372 8.7421 18 1 3.2505 -9.9223 9.8151 19 8 2.8894 -10.9104 7.9886 20 6 2.3472 -8.5162 8.3651 21 6 3.1000 -0.6598 3.3198 22 6 2.6383 -0.0109 2.1909 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 1.5879 2.4586 -1.2242 26 1 1.5615 2.4679 1.2085 27 1 1.1309 -2.6045 0.6459 28 1 1.9410 -3.7663 2.6591 29 1 1.9362 -4.1975 4.7040 30 1 3.4571 -4.5795 3.8618 31 1 4.6826 -4.4466 6.0130 32 1 3.1620 -4.0647 6.8558 33 1 4.2165 -6.3131 7.9011 34 1 5.1110 -9.5780 7.6333 35 1 4.9051 -8.3366 8.9430 36 1 2.1294 -11.4034 8.3267 37 1 2.2746 -7.7723 9.1584 38 1 1.3790 -8.7767 7.9376 39 1 3.6518 -0.1129 4.0699 40 1 2.8297 1.0438 2.0588 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_4549602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:19 Heat of formation + Delta-G solvation = -101.520421 kcal Electronic energy + Delta-G solvation = -22451.423895 eV Core-core repulsion = 18813.002443 eV Total energy + Delta-G solvation = -3638.421452 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49609 -41.11153 -39.82084 -39.06633 -37.39512 -36.30640 -34.12661 -33.11759 -32.12514 -31.47158 -26.92113 -26.78452 -26.00177 -24.73911 -23.40306 -22.09189 -21.58025 -20.81891 -19.52645 -18.57147 -18.51387 -17.92230 -17.51445 -17.28561 -16.94990 -16.80808 -16.28081 -15.99984 -15.78076 -15.51580 -15.10789 -14.65753 -14.44630 -14.31857 -14.23127 -13.95595 -13.83839 -13.60634 -13.48970 -13.20013 -12.93372 -12.88822 -12.31165 -12.28166 -12.05301 -11.79301 -11.68042 -11.46772 -11.14846 -10.76652 -10.47733 -10.11449 -10.06855 -9.22858 -4.91926 0.23228 0.31031 1.31107 1.47181 1.60352 1.69331 1.94862 2.48574 2.59550 3.10473 3.42053 3.43880 3.53422 3.66945 3.77001 3.78916 3.82798 3.88172 3.88761 3.99491 4.12601 4.21458 4.31338 4.34428 4.50598 4.56271 4.59936 4.66357 4.66688 4.74761 4.80278 4.94072 4.96999 4.97960 5.08885 5.16236 5.29224 5.47362 5.47824 5.66709 6.28939 6.45000 6.59202 6.82691 7.14280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.085 4.085 3 Si 0.768 3.232 4 C -0.124 4.124 5 C -0.065 4.065 6 C -0.216 4.216 7 C 0.122 3.878 8 O -0.317 6.317 9 C 0.073 3.927 10 C -0.130 4.130 11 C 0.517 3.483 12 O -0.589 6.589 13 N -0.704 5.704 14 C 0.118 3.882 15 H 0.083 0.917 16 C -0.133 4.133 17 C 0.079 3.921 18 H 0.099 0.901 19 O -0.577 6.577 20 C -0.178 4.178 21 C -0.150 4.150 22 C -0.080 4.080 23 H 0.394 0.606 24 H 0.092 0.908 25 H -0.287 1.287 26 H -0.295 1.295 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.421 0.579 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.399 0.601 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 0.977 4.767 6.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.193 4.193 3 Si 0.673 3.327 4 C -0.124 4.124 5 C -0.083 4.083 6 C -0.235 4.235 7 C 0.077 3.923 8 O -0.231 6.231 9 C -0.003 4.003 10 C -0.170 4.170 11 C 0.305 3.695 12 O -0.470 6.470 13 N -0.356 5.356 14 C 0.013 3.987 15 H 0.101 0.899 16 C -0.170 4.170 17 C 0.020 3.980 18 H 0.117 0.883 19 O -0.385 6.385 20 C -0.217 4.217 21 C -0.168 4.168 22 C -0.098 4.098 23 H 0.244 0.756 24 H 0.109 0.891 25 H -0.214 1.214 26 H -0.223 1.223 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.260 0.740 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.250 0.750 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.493 1.350 4.519 6.514 hybrid contribution -1.886 -0.612 -0.281 2.003 sum 2.607 0.738 4.238 5.030 Atomic orbital electron populations 1.86553 1.18822 1.80716 1.50989 1.25019 0.83852 1.12135 0.98308 0.94113 0.90243 0.71860 0.76460 1.19422 1.01692 0.94211 0.97097 1.20954 0.96510 0.94143 0.96684 1.21459 1.04299 1.01270 0.96423 1.19181 0.94236 0.92652 0.86264 1.85945 1.74013 1.23946 1.39208 1.22430 1.00570 0.78471 0.98802 1.21439 1.05912 0.90676 0.98933 1.20785 0.77904 0.89566 0.81287 1.90742 1.42156 1.72467 1.41596 1.45853 1.57068 1.09658 1.22990 1.22448 0.97316 0.80377 0.98606 0.89930 1.23507 0.96327 0.97666 0.99548 1.22627 0.95693 0.84069 0.95660 0.88324 1.86439 1.54733 1.39330 1.58046 1.24159 0.98393 0.99627 0.99566 1.20620 1.04761 0.91474 0.99984 1.21031 0.96367 1.00078 0.92279 0.75595 0.89051 1.21369 1.22281 0.85204 0.84955 0.92177 0.91805 0.85086 0.85252 0.74047 0.90955 0.85217 0.75028 0.86986 0.91969 0.82852 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.44 12.81 -148.98 -1.91 -4.34 16 2 C -0.08 -0.12 2.79 71.23 0.20 0.08 16 3 Si 0.77 -0.89 29.85 68.60 2.05 1.16 16 4 C -0.12 -0.60 5.38 -19.85 -0.11 -0.71 16 5 C -0.06 -0.41 9.68 22.26 0.22 -0.20 16 6 C -0.22 -1.44 9.04 22.37 0.20 -1.23 16 7 C 0.12 0.75 6.69 22.51 0.15 0.90 16 8 O -0.32 -1.43 10.14 -92.40 -0.94 -2.37 16 9 C 0.07 0.19 4.03 71.98 0.29 0.48 16 10 C -0.13 0.45 6.07 29.85 0.18 0.63 16 11 C 0.52 1.20 7.83 87.66 0.69 1.89 16 12 O -0.59 -7.46 15.58 -3.04 -0.05 -7.50 16 13 N -0.70 2.24 5.35 -440.04 -2.36 -0.12 16 14 C 0.12 0.04 4.17 45.51 0.19 0.23 16 15 H 0.08 0.68 7.46 -2.39 -0.02 0.67 16 16 C -0.13 0.55 7.66 31.12 0.24 0.79 16 17 C 0.08 -0.28 5.28 31.12 0.16 -0.11 16 18 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 19 O -0.58 -0.47 13.59 -148.98 -2.02 -2.49 16 20 C -0.18 0.46 7.71 31.12 0.24 0.70 16 21 C -0.15 -0.54 9.99 22.37 0.22 -0.32 16 22 C -0.08 -0.24 8.66 22.25 0.19 -0.04 16 23 H 0.39 -1.56 8.74 -74.06 -0.65 -2.21 16 24 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 25 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 26 H -0.30 -1.63 7.05 99.48 0.70 -0.93 16 27 H 0.13 0.61 8.06 -2.91 -0.02 0.59 16 28 H 0.13 0.75 6.30 -2.91 -0.02 0.73 16 29 H 0.06 0.29 7.61 -2.39 -0.02 0.28 16 30 H 0.06 0.27 7.63 -2.39 -0.02 0.26 16 31 H 0.13 -1.03 8.14 -2.39 -0.02 -1.04 16 32 H 0.13 -0.99 8.14 -2.38 -0.02 -1.01 16 33 H 0.42 -4.53 8.73 -92.71 -0.81 -5.34 16 34 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.13 -1.34 8.12 -2.38 -0.02 -1.36 16 36 H 0.40 -2.88 9.12 -74.06 -0.68 -3.56 16 37 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 39 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 40 H 0.15 -0.22 4.86 -2.91 -0.01 -0.24 16 Total: 0.00 -24.63 337.95 -3.17 -27.80 By element: Atomic # 1 Polarization: -14.20 SS G_CDS: -1.01 Total: -15.22 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 3.07 Total: 3.08 kcal Atomic # 7 Polarization: 2.24 SS G_CDS: -2.36 Total: -0.12 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -4.92 Total: -16.71 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: 2.05 Total: 1.16 kcal Total: -24.63 -3.17 -27.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_4549602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.717 kcal (2) G-P(sol) polarization free energy of solvation -24.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds