Wall clock time and date at job start Sat Mar 6 2021 19:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.46919 * 2 1 4 4 C 1.50703 * 109.47161 * 240.00016 * 2 1 3 5 5 C 1.38243 * 119.97305 * 119.97235 * 4 2 1 6 6 C 1.38289 * 120.11362 * 180.02562 * 5 4 2 7 7 C 1.38125 * 120.05159 * 0.02562 * 6 5 4 8 8 C 1.38747 * 119.94590 * 359.97438 * 7 6 5 9 9 O 1.35899 * 120.05586 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99930 * 359.97438 * 9 8 7 11 11 C 1.53002 * 109.47006 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46600 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00404 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99397 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99694 * 179.97438 * 14 12 11 16 16 H 1.09005 * 112.84983 * 23.80203 * 15 14 12 17 17 C 1.53777 * 113.61546 * 154.99965 * 15 14 12 18 18 C 1.53778 * 87.08396 * 139.98276 * 17 15 14 19 19 H 1.09003 * 113.61427 * 219.93392 * 18 17 15 20 20 O 1.42894 * 113.61349 * 89.11786 * 18 17 15 21 21 C 1.53780 * 87.07965 * 334.56622 * 18 17 15 22 22 C 1.38163 * 119.97257 * 300.00288 * 4 2 1 23 23 H 0.96703 * 114.00259 * 59.99556 * 1 2 3 24 24 H 1.08999 * 109.47278 * 120.00299 * 2 1 3 25 25 H 1.48503 * 110.00434 * 298.67949 * 3 2 1 26 26 H 1.48501 * 110.00144 * 60.00205 * 3 2 1 27 27 H 1.08004 * 119.94070 * 0.05018 * 5 4 2 28 28 H 1.07993 * 119.96940 * 180.28495 * 6 5 4 29 29 H 1.08000 * 120.02364 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47294 * 300.00489 * 10 9 8 31 31 H 1.08995 * 109.47056 * 60.00501 * 10 9 8 32 32 H 1.08993 * 109.47487 * 299.99875 * 11 10 9 33 33 H 1.09003 * 109.46669 * 60.00618 * 11 10 9 34 34 H 0.96991 * 120.00114 * 0.02562 * 14 12 11 35 35 H 1.09002 * 113.61618 * 254.53165 * 17 15 14 36 36 H 1.09003 * 113.61400 * 25.43103 * 17 15 14 37 37 H 0.96706 * 114.00154 * 180.02562 * 20 18 17 38 38 H 1.08995 * 113.61875 * 270.88195 * 21 18 17 39 39 H 1.09001 * 113.61082 * 139.97904 * 21 18 17 40 40 H 1.08001 * 120.02724 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7257 -0.0379 -2.1404 6 6 3.1878 -0.6868 -3.2707 7 6 2.8561 -2.0090 -3.4935 8 6 2.0591 -2.6862 -2.5818 9 8 1.7319 -3.9873 -2.7985 10 6 2.2428 -4.5956 -3.9864 11 6 1.7720 -6.0496 -4.0578 12 6 2.3114 -6.6912 -5.3103 13 8 3.0038 -6.0487 -6.0710 14 7 2.0235 -7.9788 -5.5854 15 6 2.5474 -8.6024 -6.8031 16 1 3.4462 -8.1119 -7.1769 17 6 2.6753 -10.1318 -6.7060 18 6 2.1651 -10.1879 -8.1556 19 1 1.4678 -11.0047 -8.3418 20 8 3.2057 -10.1133 -9.1320 21 6 1.4783 -8.8392 -7.8829 22 6 1.5972 -2.0332 -1.4486 23 1 -0.3934 0.4418 -0.7650 24 1 1.7924 -0.5139 0.8899 25 1 1.5879 2.4586 -1.2242 26 1 1.5615 2.4679 1.2085 27 1 2.9860 0.9960 -1.9679 28 1 3.8119 -0.1605 -3.9777 29 1 3.2176 -2.5154 -4.3762 30 1 1.8782 -4.0527 -4.8584 31 1 3.3323 -4.5665 -3.9697 32 1 2.1363 -6.5928 -3.1859 33 1 0.6825 -6.0782 -4.0748 34 1 1.4689 -8.4923 -4.9776 35 1 3.7026 -10.4776 -6.5911 36 1 1.9929 -10.5822 -5.9852 37 1 2.8910 -10.1477 -10.0458 38 1 0.4687 -8.9361 -7.4839 39 1 1.5393 -8.1415 -8.7181 40 1 0.9766 -2.5581 -0.7375 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_4549614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:21 Heat of formation + Delta-G solvation = -102.730434 kcal Electronic energy + Delta-G solvation = -22529.745724 eV Core-core repulsion = 18891.271802 eV Total energy + Delta-G solvation = -3638.473922 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51238 -41.13546 -39.83842 -39.11897 -37.40040 -36.31002 -34.12879 -33.04532 -32.49480 -30.82998 -27.15825 -26.79187 -26.25592 -24.41747 -23.69087 -22.12504 -21.56110 -20.82532 -19.39668 -18.53721 -18.21652 -17.76463 -17.53004 -17.17215 -17.13313 -16.84293 -16.32791 -16.17784 -15.81517 -15.59471 -15.14033 -14.87955 -14.48026 -14.42946 -14.16545 -14.13416 -13.62411 -13.50742 -13.27397 -13.12400 -12.94669 -12.86870 -12.41853 -12.31299 -12.00824 -11.84427 -11.59217 -11.47149 -11.15766 -10.77323 -10.68559 -10.12163 -9.95586 -9.29708 -4.90355 0.17679 0.37221 1.29341 1.45891 1.62210 1.68914 1.96451 2.48340 2.64055 3.10184 3.39809 3.43387 3.52446 3.62712 3.66564 3.77567 3.82455 3.86739 3.94737 4.07417 4.12134 4.21812 4.25764 4.37133 4.52385 4.54456 4.61536 4.64390 4.66127 4.73750 4.79837 4.93572 4.96378 4.97482 5.08341 5.24036 5.36105 5.41885 5.46568 5.68205 6.30132 6.43751 6.46462 6.82680 7.12689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.086 4.086 3 Si 0.776 3.224 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.132 4.132 12 C 0.518 3.482 13 O -0.587 6.587 14 N -0.704 5.704 15 C 0.118 3.882 16 H 0.084 0.916 17 C -0.133 4.133 18 C 0.079 3.921 19 H 0.099 0.901 20 O -0.577 6.577 21 C -0.178 4.178 22 C -0.141 4.141 23 H 0.386 0.614 24 H 0.126 0.874 25 H -0.282 1.282 26 H -0.302 1.302 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.399 0.601 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -3.811 -0.484 4.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.001 4.001 11 C -0.171 4.171 12 C 0.306 3.694 13 O -0.467 6.467 14 N -0.356 5.356 15 C 0.013 3.987 16 H 0.102 0.898 17 C -0.171 4.171 18 C 0.020 3.980 19 H 0.116 0.884 20 O -0.385 6.385 21 C -0.217 4.217 22 C -0.160 4.160 23 H 0.236 0.764 24 H 0.144 0.856 25 H -0.208 1.208 26 H -0.230 1.230 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.259 0.741 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.582 -2.971 0.164 3.032 hybrid contribution -1.484 -0.379 -1.112 1.892 sum -2.066 -3.350 -0.948 4.048 Atomic orbital electron populations 1.86570 1.18436 1.80467 1.50137 1.25349 0.83527 1.12254 0.98344 0.93891 0.90314 0.71342 0.76403 1.20177 0.97638 0.93475 0.96911 1.21176 1.00253 1.00885 0.95054 1.21246 0.97635 0.93366 0.97094 1.21549 1.03186 0.97135 1.01161 1.19147 0.95302 0.83496 0.94954 1.85950 1.71440 1.22835 1.43578 1.22430 0.98954 0.93263 0.85487 1.21443 1.04953 0.93930 0.96796 1.20737 0.79311 0.82390 0.86990 1.90735 1.40373 1.63767 1.51871 1.45863 1.53016 1.11585 1.25160 1.22453 0.97505 0.93530 0.85218 0.89813 1.23511 1.03737 0.93783 0.96092 1.22622 0.89506 0.96575 0.89330 0.88371 1.86436 1.35323 1.96707 1.20060 1.24154 0.99865 0.98545 0.99137 1.20324 1.03770 0.94673 0.97195 0.76448 0.85620 1.20807 1.23032 0.83403 0.82979 0.84725 0.91848 0.91699 0.85404 0.85428 0.74112 0.90940 0.85313 0.75009 0.87046 0.91861 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.11 12.77 -148.98 -1.90 -4.02 16 2 C -0.09 -0.06 2.82 71.24 0.20 0.14 16 3 Si 0.78 -1.24 29.79 68.60 2.04 0.80 16 4 C -0.08 -0.19 5.39 -19.88 -0.11 -0.29 16 5 C -0.16 -0.03 8.67 22.28 0.19 0.17 16 6 C -0.08 -0.06 10.04 22.25 0.22 0.16 16 7 C -0.21 -0.81 9.04 22.36 0.20 -0.60 16 8 C 0.12 0.69 6.69 22.50 0.15 0.84 16 9 O -0.32 -1.69 10.14 -92.41 -0.94 -2.62 16 10 C 0.07 0.17 4.03 71.98 0.29 0.46 16 11 C -0.13 0.42 6.07 29.85 0.18 0.61 16 12 C 0.52 1.09 7.83 87.66 0.69 1.78 16 13 O -0.59 -7.02 15.58 -3.02 -0.05 -7.07 16 14 N -0.70 2.28 5.35 -440.02 -2.36 -0.08 16 15 C 0.12 0.01 4.17 45.52 0.19 0.20 16 16 H 0.08 0.65 7.46 -2.38 -0.02 0.64 16 17 C -0.13 0.56 7.66 31.12 0.24 0.80 16 18 C 0.08 -0.29 5.28 31.12 0.16 -0.13 16 19 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 20 O -0.58 -0.30 13.59 -148.98 -2.02 -2.32 16 21 C -0.18 0.51 7.71 31.12 0.24 0.75 16 22 C -0.14 -0.75 9.55 22.36 0.21 -0.53 16 23 H 0.39 -0.66 8.70 -74.06 -0.64 -1.31 16 24 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 25 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 26 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 27 H 0.15 -0.65 4.87 -2.91 -0.01 -0.67 16 28 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 29 H 0.13 0.36 6.30 -2.91 -0.02 0.34 16 30 H 0.06 0.24 7.62 -2.39 -0.02 0.22 16 31 H 0.06 0.24 7.62 -2.39 -0.02 0.22 16 32 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.42 -4.44 8.73 -92.72 -0.81 -5.25 16 35 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.13 -1.31 8.12 -2.39 -0.02 -1.33 16 37 H 0.40 -3.01 9.12 -74.05 -0.68 -3.69 16 38 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 Total: 0.00 -23.15 337.84 -3.16 -26.31 By element: Atomic # 1 Polarization: -14.34 SS G_CDS: -1.00 Total: -15.35 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 3.07 Total: 4.34 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.36 Total: -0.08 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -4.91 Total: -16.03 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.04 Total: 0.80 kcal Total: -23.15 -3.16 -26.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_4549614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.417 kcal (2) G-P(sol) polarization free energy of solvation -23.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds