Wall clock time and date at job start Sat Mar 6 2021 19:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46979 * 2 1 4 4 C 1.50701 * 109.47202 * 240.00159 * 2 1 3 5 5 C 1.38232 * 119.97343 * 119.99823 * 4 2 1 6 6 C 1.38294 * 120.11124 * 180.02562 * 5 4 2 7 7 C 1.38122 * 120.05499 * 359.97438 * 6 5 4 8 8 C 1.38756 * 119.94212 * 0.28466 * 7 6 5 9 9 O 1.35904 * 120.05096 * 179.71799 * 8 7 6 10 10 C 1.42900 * 117.00131 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.46759 * 179.97438 * 10 9 8 12 12 C 1.38340 * 119.92673 * 90.00119 * 11 10 9 13 13 C 1.38379 * 120.29247 * 180.02562 * 12 11 10 14 14 C 1.37930 * 120.14679 * 0.02562 * 13 12 11 15 15 C 1.39593 * 119.85398 * 359.97438 * 14 13 12 16 16 C 1.47847 * 120.15053 * 180.02562 * 15 14 13 17 17 O 1.21544 * 120.00668 * 180.02562 * 16 15 14 18 18 N 1.34782 * 119.99250 * 0.02562 * 16 15 14 19 19 C 1.46501 * 119.99620 * 180.02562 * 18 16 15 20 20 H 1.09000 * 112.84866 * 23.80183 * 19 18 16 21 21 C 1.53778 * 113.61504 * 154.99887 * 19 18 16 22 22 C 1.53780 * 87.08009 * 139.98096 * 21 19 18 23 23 H 1.09009 * 113.61524 * 220.01684 * 22 21 19 24 24 O 1.42902 * 113.61619 * 89.20330 * 22 21 19 25 25 C 1.53776 * 113.61431 * 252.49900 * 19 18 16 26 26 C 1.37977 * 119.92868 * 269.72826 * 11 10 9 27 27 C 1.38173 * 119.96834 * 300.02172 * 4 2 1 28 28 H 0.96699 * 113.99847 * 59.99922 * 1 2 3 29 29 H 1.08997 * 109.47255 * 119.99837 * 2 1 3 30 30 H 1.48497 * 109.99860 * 298.68018 * 3 2 1 31 31 H 1.48492 * 110.00137 * 59.99857 * 3 2 1 32 32 H 1.08002 * 119.94710 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.97251 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.02504 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46950 * 300.00206 * 10 9 8 36 36 H 1.08994 * 109.46928 * 60.00366 * 10 9 8 37 37 H 1.08002 * 119.85220 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.92711 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.07900 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00237 * 0.02562 * 18 16 15 41 41 H 1.08996 * 113.61948 * 254.53170 * 21 19 18 42 42 H 1.09001 * 113.61564 * 25.43393 * 21 19 18 43 43 H 0.96698 * 114.00014 * 179.97438 * 24 22 21 44 44 H 1.08998 * 113.61370 * 334.56563 * 25 19 18 45 45 H 1.08999 * 113.61706 * 105.46923 * 25 19 18 46 46 H 1.08002 * 120.07393 * 0.02562 * 26 11 10 47 47 H 1.07997 * 120.02588 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7260 -0.0380 -2.1400 6 6 3.1882 -0.6870 -3.2704 7 6 2.8570 -2.0093 -3.4930 8 6 2.0550 -2.6848 -2.5842 9 8 1.7230 -3.9842 -2.8039 10 6 2.2343 -4.5926 -3.9915 11 6 1.7660 -6.0231 -4.0647 12 6 0.5746 -6.3277 -4.6984 13 6 0.1371 -7.6386 -4.7695 14 6 0.8872 -8.6506 -4.2078 15 6 2.0903 -8.3502 -3.5669 16 6 2.8998 -9.4300 -2.9630 17 8 3.9468 -9.1654 -2.4052 18 7 2.4767 -10.7078 -3.0310 19 6 3.2785 -11.7778 -2.4322 20 1 3.9349 -11.4211 -1.6385 21 6 2.4574 -13.0180 -2.0417 22 6 3.6318 -13.8626 -2.5635 23 1 3.3205 -14.7498 -3.1151 24 8 4.6196 -14.1451 -1.5702 25 6 3.9867 -12.6691 -3.4659 26 6 2.5292 -7.0268 -3.5045 27 6 1.5968 -2.0331 -1.4488 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4586 -1.2242 31 1 1.5615 2.4679 1.2084 32 1 2.9865 0.9959 -1.9676 33 1 3.8085 -0.1594 -3.9798 34 1 3.2185 -2.5158 -4.3757 35 1 1.8739 -4.0468 -4.8635 36 1 3.3238 -4.5679 -3.9722 37 1 -0.0167 -5.5389 -5.1395 38 1 -0.7941 -7.8696 -5.2653 39 1 0.5445 -9.6733 -4.2636 40 1 1.6414 -10.9191 -3.4765 41 1 2.2940 -13.1133 -0.9683 42 1 1.5425 -13.1365 -2.6223 43 1 5.3606 -14.6764 -1.8923 44 1 3.4900 -12.6922 -4.4358 45 1 5.0580 -12.4828 -3.5422 46 1 3.4611 -6.7882 -3.0135 47 1 0.9760 -2.5579 -0.7378 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_4549630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:27 Heat of formation + Delta-G solvation = -66.199726 kcal Electronic energy + Delta-G solvation = -29654.930952 eV Core-core repulsion = 25349.598940 eV Total energy + Delta-G solvation = -4305.332012 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.68155 -41.30052 -40.35325 -39.46405 -38.84433 -37.37848 -36.35043 -34.40171 -33.14862 -32.48919 -32.14111 -31.04917 -27.80896 -26.80502 -26.67115 -26.26796 -24.16624 -23.67646 -23.16922 -22.19905 -21.47227 -20.87303 -19.27524 -18.98363 -18.42015 -17.94021 -17.51234 -17.25178 -17.17381 -16.97271 -16.90638 -16.38649 -16.23454 -16.09361 -15.78626 -15.56169 -15.40760 -14.98735 -14.85274 -14.61328 -14.44660 -14.14480 -13.95526 -13.74739 -13.56128 -13.47733 -13.44510 -13.18191 -12.98767 -12.81496 -12.58752 -12.33146 -12.21468 -12.00865 -11.97443 -11.60417 -11.48724 -11.21368 -10.78621 -10.70277 -10.29919 -10.06243 -9.96728 -9.94421 -9.27840 -4.91505 -0.30441 0.12414 0.19159 0.38752 1.28434 1.60769 1.62678 1.93855 1.99720 2.23156 2.65484 2.83815 3.09637 3.37418 3.40750 3.50602 3.53828 3.65438 3.65666 3.74699 3.78031 3.83227 3.96647 4.04902 4.07295 4.11456 4.16787 4.22141 4.24252 4.40952 4.43735 4.52621 4.54172 4.64661 4.65293 4.69658 4.79411 4.86201 4.91557 4.96738 4.97014 5.04209 5.15676 5.24249 5.27480 5.35625 5.36889 5.42517 5.43184 5.70194 5.75634 6.35318 6.39741 6.45496 6.83516 7.06411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.092 4.092 3 Si 0.780 3.220 4 C -0.082 4.082 5 C -0.158 4.158 6 C -0.072 4.072 7 C -0.207 4.207 8 C 0.115 3.885 9 O -0.329 6.329 10 C 0.099 3.901 11 C -0.113 4.113 12 C -0.069 4.069 13 C -0.125 4.125 14 C -0.067 4.067 15 C -0.157 4.157 16 C 0.554 3.446 17 O -0.586 6.586 18 N -0.699 5.699 19 C 0.115 3.885 20 H 0.082 0.918 21 C -0.133 4.133 22 C 0.082 3.918 23 H 0.102 0.898 24 O -0.577 6.577 25 C -0.177 4.177 26 C -0.056 4.056 27 C -0.148 4.148 28 H 0.386 0.614 29 H 0.120 0.880 30 H -0.277 1.277 31 H -0.303 1.303 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.417 0.583 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.400 0.600 44 H 0.113 0.887 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -2.436 -8.149 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.199 4.199 3 Si 0.684 3.316 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.070 3.930 9 O -0.243 6.243 10 C 0.025 3.975 11 C -0.113 4.113 12 C -0.087 4.087 13 C -0.142 4.142 14 C -0.086 4.086 15 C -0.160 4.160 16 C 0.343 3.657 17 O -0.467 6.467 18 N -0.351 5.351 19 C 0.011 3.989 20 H 0.100 0.900 21 C -0.171 4.171 22 C 0.023 3.977 23 H 0.120 0.880 24 O -0.385 6.385 25 C -0.216 4.216 26 C -0.075 4.075 27 C -0.167 4.167 28 H 0.236 0.764 29 H 0.138 0.862 30 H -0.203 1.203 31 H -0.232 1.232 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.178 0.822 40 H 0.256 0.744 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.250 0.750 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.664 -1.573 -6.731 7.109 hybrid contribution -0.682 -0.594 -0.717 1.155 sum -2.346 -2.167 -7.448 8.103 Atomic orbital electron populations 1.86573 1.18525 1.80531 1.50128 1.25415 0.83531 1.12637 0.98354 0.93857 0.90228 0.70962 0.76534 1.20151 0.97803 0.93338 0.96945 1.21185 1.00213 1.00930 0.95225 1.21295 0.97404 0.93427 0.96890 1.21586 1.02722 0.96984 1.01292 1.19191 0.95346 0.83470 0.94959 1.86131 1.71186 1.23045 1.43980 1.21744 0.99254 0.89664 0.86840 1.19519 0.96879 0.93412 1.01536 1.21661 0.93569 0.98312 0.95171 1.21531 1.01200 0.91754 0.99733 1.21699 0.91643 1.01631 0.93614 1.19897 0.97949 0.93208 1.04921 1.18670 0.84663 0.83740 0.78588 1.90767 1.25983 1.83966 1.45959 1.45788 1.26241 1.05312 1.57754 1.22526 0.94391 0.85442 0.96590 0.89972 1.23524 0.97964 0.92356 1.03223 1.22603 0.89503 0.96397 0.89242 0.88003 1.86442 1.36885 1.76386 1.38823 1.24163 1.01539 0.96517 0.99389 1.21175 0.99236 0.91844 0.95225 1.20302 1.04150 0.94855 0.97391 0.76439 0.86204 1.20312 1.23170 0.83392 0.82422 0.83377 0.88553 0.90322 0.83173 0.81663 0.82174 0.74364 0.90907 0.85113 0.74973 0.86875 0.91817 0.86469 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.85 12.77 -148.98 -1.90 -4.75 16 2 C -0.09 -0.18 2.82 71.24 0.20 0.02 16 3 Si 0.78 -0.93 29.79 68.60 2.04 1.11 16 4 C -0.08 -0.24 5.39 -19.88 -0.11 -0.35 16 5 C -0.16 0.08 8.67 22.28 0.19 0.27 16 6 C -0.07 0.11 10.04 22.26 0.22 0.33 16 7 C -0.21 -0.18 9.04 22.37 0.20 0.03 16 8 C 0.12 0.66 6.69 22.51 0.15 0.81 16 9 O -0.33 -2.25 10.12 -92.47 -0.94 -3.19 16 10 C 0.10 0.08 4.86 71.24 0.35 0.42 16 11 C -0.11 -0.25 5.50 -19.90 -0.11 -0.36 16 12 C -0.07 0.15 9.69 22.33 0.22 0.37 16 13 C -0.12 0.61 10.03 22.23 0.22 0.84 16 14 C -0.07 0.23 9.54 22.52 0.21 0.45 16 15 C -0.16 -0.65 5.87 -20.09 -0.12 -0.77 16 16 C 0.55 4.57 7.77 86.79 0.67 5.25 16 17 O -0.59 -10.59 15.95 -3.85 -0.06 -10.65 16 18 N -0.70 -0.38 5.31 -442.92 -2.35 -2.73 16 19 C 0.12 0.28 4.18 45.52 0.19 0.47 16 20 H 0.08 0.87 7.46 -2.39 -0.02 0.85 16 21 C -0.13 0.39 7.66 31.12 0.24 0.63 16 22 C 0.08 -0.24 5.27 31.12 0.16 -0.08 16 23 H 0.10 -0.80 8.14 -2.38 -0.02 -0.82 16 24 O -0.58 -0.78 13.59 -148.98 -2.03 -2.81 16 25 C -0.18 0.27 7.71 31.12 0.24 0.51 16 26 C -0.06 -0.35 9.24 22.53 0.21 -0.14 16 27 C -0.15 -1.00 9.55 22.37 0.21 -0.79 16 28 H 0.39 -0.35 8.70 -74.06 -0.64 -0.99 16 29 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 30 H -0.28 -0.46 7.11 99.48 0.71 0.25 16 31 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 32 H 0.15 -0.75 4.87 -2.91 -0.01 -0.76 16 33 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 34 H 0.15 -0.53 6.30 -2.91 -0.02 -0.55 16 35 H 0.10 -0.39 7.61 -2.39 -0.02 -0.41 16 36 H 0.08 -0.04 7.60 -2.39 -0.02 -0.06 16 37 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 38 H 0.17 -1.82 8.06 -2.91 -0.02 -1.84 16 39 H 0.16 -1.74 6.41 -2.91 -0.02 -1.76 16 40 H 0.42 -3.08 6.76 -92.71 -0.63 -3.71 16 41 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.13 -1.24 8.12 -2.39 -0.02 -1.26 16 43 H 0.40 -2.75 9.12 -74.06 -0.68 -3.43 16 44 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.12 1.12 7.65 -2.91 -0.02 1.10 16 47 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 Total: 0.00 -28.79 394.62 -2.54 -31.33 By element: Atomic # 1 Polarization: -15.35 SS G_CDS: -0.87 Total: -16.22 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.57 Total: 7.90 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.35 Total: -2.73 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -4.92 Total: -21.40 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.04 Total: 1.11 kcal Total: -28.79 -2.54 -31.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_4549630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.870 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds