Wall clock time and date at job start Sat Mar 6 2021 19:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47202 * 2 1 4 4 C 1.50697 * 109.47129 * 239.99825 * 2 1 3 5 5 C 1.38242 * 119.94553 * 119.98173 * 4 2 1 6 6 C 1.38168 * 120.05789 * 179.97438 * 5 4 2 7 7 C 1.38703 * 119.94277 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05406 * 180.27523 * 7 6 5 9 9 C 1.42905 * 117.00064 * 359.73121 * 8 7 6 10 10 C 1.50697 * 109.46904 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00425 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99725 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99928 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.85456 * 23.80220 * 13 12 10 15 15 C 1.53791 * 113.61206 * 154.99568 * 13 12 10 16 16 C 1.53785 * 87.07778 * 139.98422 * 15 13 12 17 17 H 1.09006 * 113.61223 * 220.02069 * 16 15 13 18 18 O 1.42893 * 113.61780 * 89.11544 * 16 15 13 19 19 C 1.53781 * 113.61496 * 252.49179 * 13 12 10 20 20 C 1.38755 * 119.89048 * 0.02562 * 7 6 5 21 21 N 1.48006 * 120.02757 * 179.97438 * 20 7 6 22 22 O 1.21794 * 119.99942 * 179.97438 * 21 20 7 23 23 O 1.21801 * 119.99880 * 0.02562 * 21 20 7 24 24 C 1.38116 * 119.94123 * 359.97438 * 20 7 6 25 25 H 0.96706 * 113.99664 * 60.00098 * 1 2 3 26 26 H 1.09006 * 109.47121 * 119.99900 * 2 1 3 27 27 H 1.48498 * 109.99881 * 298.67896 * 3 2 1 28 28 H 1.48503 * 110.00032 * 60.00070 * 3 2 1 29 29 H 1.08004 * 119.97397 * 359.97438 * 5 4 2 30 30 H 1.08008 * 120.02680 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47192 * 299.99849 * 9 8 7 32 32 H 1.08996 * 109.46777 * 59.99891 * 9 8 7 33 33 H 0.97000 * 120.00469 * 359.97438 * 12 10 9 34 34 H 1.08998 * 113.61222 * 254.52638 * 15 13 12 35 35 H 1.08993 * 113.61624 * 25.35282 * 15 13 12 36 36 H 0.96699 * 113.99985 * 179.97438 * 18 16 15 37 37 H 1.08998 * 113.61440 * 334.57256 * 19 13 12 38 38 H 1.08997 * 113.61469 * 105.47074 * 19 13 12 39 39 H 1.08002 * 119.97134 * 180.02562 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7257 -0.0374 -2.1399 6 6 3.1880 -0.6867 -3.2685 7 6 2.8539 -2.0147 -3.4889 8 8 3.3120 -2.6572 -4.5954 9 6 4.1284 -1.9019 -5.4928 10 6 4.5397 -2.7731 -6.6516 11 8 4.1706 -3.9271 -6.7037 12 7 5.3187 -2.2699 -7.6296 13 6 5.7191 -3.1170 -8.7559 14 1 5.0357 -3.9495 -8.9234 15 6 6.0523 -2.3271 -10.0327 16 6 7.2177 -3.3087 -10.2413 17 1 8.1297 -2.8332 -10.6025 18 8 6.8604 -4.4699 -10.9935 19 6 7.1998 -3.5307 -8.7197 20 6 2.0555 -2.6877 -2.5751 21 7 1.6967 -4.1047 -2.8076 22 8 0.9963 -4.6951 -2.0049 23 8 2.1027 -4.6806 -3.8011 24 6 1.5960 -2.0342 -1.4485 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5879 2.4585 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 2.9852 0.9968 -1.9680 30 1 3.8089 -0.1605 -3.9785 31 1 3.5649 -1.0457 -5.8635 32 1 5.0174 -1.5522 -4.9681 33 1 5.6143 -1.3470 -7.5878 34 1 5.2822 -2.3942 -10.8010 35 1 6.3716 -1.3026 -9.8415 36 1 7.5893 -5.0908 -11.1283 37 1 7.8340 -2.8357 -8.1694 38 1 7.3559 -4.5693 -8.4281 39 1 0.9749 -2.5577 -0.7367 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_4549638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:41 Heat of formation + Delta-G solvation = -81.010159 kcal Electronic energy + Delta-G solvation = -27181.014088 eV Core-core repulsion = 22868.003212 eV Total energy + Delta-G solvation = -4313.010876 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.02417 -41.80510 -41.18221 -40.08511 -39.21651 -37.64330 -37.12570 -36.32284 -34.10073 -33.48505 -32.40071 -30.09911 -27.60125 -26.94086 -26.80546 -25.47416 -23.97166 -22.82112 -21.85207 -21.08141 -20.49130 -19.45227 -19.28160 -18.71431 -18.38162 -18.34348 -18.23350 -17.68025 -17.31449 -17.08069 -16.55663 -16.35959 -16.27320 -15.84258 -15.57187 -15.38082 -15.01457 -14.63493 -14.15115 -14.09962 -13.86771 -13.67734 -13.63276 -13.34078 -13.25237 -12.58973 -12.55532 -12.36579 -12.19844 -12.02617 -11.85157 -11.73292 -11.60006 -11.07403 -10.98327 -10.90496 -10.84589 -10.19874 -9.92676 -5.23409 -1.13788 -0.39350 0.37629 0.52958 0.99243 1.08211 1.31836 1.39032 1.74434 1.91987 2.20359 2.89453 2.95907 3.00890 3.14382 3.20960 3.27995 3.40865 3.51836 3.52620 3.55068 3.59542 3.68834 3.70250 3.97074 4.13195 4.16592 4.32578 4.39354 4.42031 4.42843 4.65213 4.66321 4.78190 4.87464 4.91339 4.96637 5.31473 5.44516 5.70200 6.14562 6.24504 6.55772 6.93673 7.02348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.072 4.072 3 Si 0.688 3.312 4 C -0.156 4.156 5 C -0.024 4.024 6 C -0.210 4.210 7 C 0.200 3.800 8 O -0.254 6.254 9 C 0.030 3.970 10 C 0.513 3.487 11 O -0.494 6.494 12 N -0.719 5.719 13 C 0.132 3.868 14 H 0.123 0.877 15 C -0.141 4.141 16 C 0.082 3.918 17 H 0.076 0.924 18 O -0.550 6.550 19 C -0.185 4.185 20 C -0.075 4.075 21 N 0.028 4.972 22 O -0.176 6.176 23 O -0.118 6.118 24 C 0.009 3.991 25 H 0.378 0.622 26 H 0.126 0.874 27 H -0.256 1.256 28 H -0.251 1.251 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.386 0.614 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 10.323 -1.466 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.182 4.182 3 Si 0.588 3.412 4 C -0.158 4.158 5 C -0.042 4.042 6 C -0.229 4.229 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.048 4.048 10 C 0.297 3.703 11 O -0.366 6.366 12 N -0.373 5.373 13 C 0.027 3.973 14 H 0.141 0.859 15 C -0.179 4.179 16 C 0.022 3.978 17 H 0.094 0.906 18 O -0.356 6.356 19 C -0.224 4.224 20 C -0.160 4.160 21 N 0.548 4.452 22 O -0.385 6.385 23 O -0.342 6.342 24 C -0.010 4.010 25 H 0.226 0.774 26 H 0.144 0.856 27 H -0.181 1.181 28 H -0.175 1.175 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.931 10.735 -0.853 12.807 hybrid contribution -0.321 -0.082 -0.543 0.637 sum 6.610 10.653 -1.396 12.614 Atomic orbital electron populations 1.86660 1.17218 1.79839 1.49408 1.25073 0.84352 1.11173 0.97579 0.95181 0.91242 0.73753 0.81047 1.20253 1.02275 0.93905 0.99324 1.21260 0.91771 0.99928 0.91230 1.21267 1.07191 0.92652 1.01777 1.18702 0.89873 0.90793 0.85610 1.86511 1.62718 1.37361 1.29673 1.22750 0.96323 0.94910 0.90821 1.19865 0.79116 0.88237 0.83099 1.90871 1.52495 1.17035 1.76180 1.45822 1.52585 1.15659 1.23232 1.22581 0.95885 0.94613 0.84187 0.85924 1.23470 0.98739 0.98166 0.97502 1.22460 0.97424 0.87547 0.90384 0.90572 1.86478 1.41009 1.33314 1.74796 1.24186 0.97214 1.03503 0.97514 1.20590 1.10563 0.84068 1.00774 1.43339 0.99197 1.02277 1.00352 1.94555 1.35242 1.66684 1.42042 1.94704 1.54668 1.67547 1.17254 1.20842 0.93477 0.93566 0.93073 0.77413 0.85622 1.18115 1.17508 0.83358 0.82596 0.88059 0.87969 0.76416 0.89489 0.88208 0.76580 0.88908 0.90083 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.36 12.77 -35.23 -0.45 -0.09 16 2 C -0.07 0.19 2.82 36.00 0.10 0.29 16 3 Si 0.69 -2.63 29.78 -169.99 -5.06 -7.69 16 4 C -0.16 0.35 5.39 -104.60 -0.56 -0.22 16 5 C -0.02 0.10 8.66 -39.61 -0.34 -0.25 16 6 C -0.21 0.73 9.04 -39.44 -0.36 0.37 16 7 C 0.20 0.13 6.67 -39.22 -0.26 -0.14 16 8 O -0.25 -0.56 7.68 -49.79 -0.38 -0.94 16 9 C 0.03 -0.08 5.22 36.00 0.19 0.11 16 10 C 0.51 0.38 7.91 -10.99 -0.09 0.29 16 11 O -0.49 -3.27 16.10 -14.35 -0.23 -3.50 16 12 N -0.72 1.78 5.35 -53.01 -0.28 1.50 16 13 C 0.13 -0.11 4.17 -67.11 -0.28 -0.39 16 14 H 0.12 0.30 7.46 -51.93 -0.39 -0.09 16 15 C -0.14 0.36 7.66 -25.91 -0.20 0.16 16 16 C 0.08 -0.17 5.28 -25.91 -0.14 -0.31 16 17 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 18 O -0.55 0.14 13.59 -35.23 -0.48 -0.34 16 19 C -0.19 0.35 7.71 -25.92 -0.20 0.15 16 20 C -0.08 -0.21 6.87 -79.81 -0.55 -0.76 16 21 N 0.03 0.19 4.45 34.03 0.15 0.34 16 22 O -0.18 -1.29 18.45 -29.46 -0.54 -1.84 16 23 O -0.12 -1.03 17.24 -36.49 -0.63 -1.66 16 24 C 0.01 0.00 9.11 -39.61 -0.36 -0.36 16 25 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 26 H 0.13 -0.42 7.96 -51.93 -0.41 -0.83 16 27 H -0.26 0.60 7.11 56.52 0.40 1.00 16 28 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 29 H 0.15 -0.99 4.87 -52.48 -0.26 -1.25 16 30 H 0.16 -1.11 6.30 -52.48 -0.33 -1.44 16 31 H 0.10 -0.59 7.67 -51.93 -0.40 -0.99 16 32 H 0.10 -0.62 7.65 -51.93 -0.40 -1.02 16 33 H 0.40 -2.54 8.73 -40.82 -0.36 -2.90 16 34 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.10 -0.50 8.12 -51.93 -0.42 -0.92 16 36 H 0.39 -1.62 9.12 45.56 0.42 -1.20 16 37 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 38 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 39 H 0.16 0.08 7.61 -52.49 -0.40 -0.32 16 LS Contribution 342.91 15.07 5.17 5.17 Total: 0.00 -13.84 342.91 -9.23 -23.06 By element: Atomic # 1 Polarization: -9.54 SS G_CDS: -3.44 Total: -12.98 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.05 Total: -1.03 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -0.13 Total: 1.84 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -2.71 Total: -8.37 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: -5.06 Total: -7.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -13.84 -9.23 -23.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_4549638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.946 kcal (2) G-P(sol) polarization free energy of solvation -13.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds