Wall clock time and date at job start Sat Mar 6 2021 19:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 119.99485 * 2 1 3 5 5 C 1.38238 * 119.97361 * 244.72664 * 4 2 1 6 6 C 1.38287 * 120.11238 * 179.76605 * 5 4 2 7 7 C 1.38127 * 120.05446 * 0.51012 * 6 5 4 8 8 C 1.38754 * 119.94296 * 359.74293 * 7 6 5 9 9 O 1.35898 * 120.05756 * 179.97438 * 8 7 6 10 10 C 1.42903 * 116.99943 * 0.02705 * 9 8 7 11 11 C 1.50697 * 109.47262 * 179.97438 * 10 9 8 12 12 C 1.39551 * 120.07479 * 179.72236 * 11 10 9 13 13 C 1.47850 * 120.14332 * 0.02562 * 12 11 10 14 14 O 1.21548 * 120.00128 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99899 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00008 * 179.97438 * 15 13 12 17 17 H 1.09006 * 112.85107 * 23.80575 * 16 15 13 18 18 C 1.53777 * 113.61532 * 155.00027 * 16 15 13 19 19 C 1.53788 * 87.07972 * 139.98453 * 18 16 15 20 20 H 1.09002 * 113.61164 * 220.02186 * 19 18 16 21 21 O 1.42898 * 113.61504 * 89.12093 * 19 18 16 22 22 C 1.53777 * 87.07955 * 334.56802 * 19 18 16 23 23 C 1.39601 * 119.71053 * 179.74693 * 12 11 10 24 24 C 1.37928 * 119.85119 * 0.50553 * 23 12 11 25 25 C 1.38382 * 120.14746 * 359.76991 * 24 23 12 26 26 C 1.37982 * 120.07185 * 0.02562 * 11 10 9 27 27 C 1.38163 * 119.96833 * 65.00211 * 4 2 1 28 28 H 0.96695 * 114.00385 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.47736 * 240.00116 * 2 1 3 30 30 H 1.48504 * 109.99999 * 299.99533 * 3 2 1 31 31 H 1.48501 * 110.00135 * 61.31516 * 3 2 1 32 32 H 1.08001 * 119.94354 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.97758 * 180.23758 * 6 5 4 34 34 H 1.07996 * 120.02910 * 179.76729 * 7 6 5 35 35 H 1.09006 * 109.46635 * 299.99705 * 10 9 8 36 36 H 1.08999 * 109.46829 * 59.99590 * 10 9 8 37 37 H 0.97001 * 120.00301 * 359.97438 * 15 13 12 38 38 H 1.09003 * 113.61558 * 254.52842 * 18 16 15 39 39 H 1.09000 * 113.61214 * 25.35373 * 18 16 15 40 40 H 0.96700 * 114.00003 * 180.02562 * 21 19 18 41 41 H 1.09006 * 113.61780 * 270.88264 * 22 19 18 42 42 H 1.09005 * 113.61486 * 139.98661 * 22 19 18 43 43 H 1.08007 * 120.06947 * 180.25318 * 23 12 11 44 44 H 1.08003 * 119.92603 * 179.74608 * 24 23 12 45 45 H 1.08001 * 119.85216 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.92648 * 0.02562 * 26 11 10 47 47 H 1.07998 * 120.02857 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6435 -0.0128 2.1883 6 6 3.1017 -0.6607 3.3208 7 6 2.8576 -2.0093 3.4928 8 6 2.1475 -2.7128 2.5305 9 8 1.9065 -4.0398 2.6971 10 6 2.4131 -4.6468 3.8874 11 6 2.0512 -6.1096 3.8986 12 6 2.4450 -6.9193 4.9649 13 6 3.2177 -6.3454 6.0871 14 8 3.5117 -5.1660 6.0822 15 7 3.5960 -7.1299 7.1157 16 6 4.3621 -6.5613 8.2274 17 1 4.2176 -5.4863 8.3350 18 6 4.2052 -7.3388 9.5448 19 6 5.7089 -7.1073 9.7691 20 1 6.2262 -7.9712 10.1865 21 8 6.0040 -5.8934 10.4630 22 6 5.8387 -6.9906 8.2412 23 6 2.1010 -8.2723 4.9700 24 6 1.3841 -8.8024 3.9177 25 6 1.0017 -7.9953 2.8607 26 6 1.3352 -6.6528 2.8516 27 6 1.6845 -2.0594 1.3978 28 1 -0.3934 0.4416 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2086 31 1 1.5877 2.4586 1.2242 32 1 2.8396 1.0406 2.0533 33 1 3.6546 -0.1127 4.0695 34 1 3.2188 -2.5156 4.3757 35 1 3.4976 -4.5402 3.9163 36 1 1.9766 -4.1582 4.7585 37 1 3.3610 -8.0710 7.1198 38 1 3.5723 -6.8358 10.2760 39 1 3.9396 -8.3866 9.4045 40 1 6.9482 -5.7421 10.6067 41 1 6.0210 -7.9436 7.7444 42 1 6.5245 -6.2066 7.9198 43 1 2.3992 -8.9033 5.7942 44 1 1.1209 -9.8499 3.9184 45 1 0.4408 -8.4155 2.0389 46 1 1.0345 -6.0284 2.0233 47 1 1.1322 -2.6049 0.6470 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_4557126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:39:46 Heat of formation + Delta-G solvation = -62.010323 kcal Electronic energy + Delta-G solvation = -30670.741374 eV Core-core repulsion = 26365.591028 eV Total energy + Delta-G solvation = -4305.150346 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.86382 -41.24506 -40.36212 -39.29634 -38.91091 -37.40232 -36.35816 -34.27374 -33.32879 -32.53975 -31.97895 -31.04158 -27.99228 -26.79511 -26.75039 -25.89940 -24.43147 -23.66367 -23.06734 -21.88492 -21.69129 -20.90285 -19.20763 -19.00851 -18.41974 -18.01575 -17.44704 -17.32110 -17.20553 -17.11940 -16.57634 -16.35521 -16.22572 -16.14568 -15.73578 -15.63588 -15.46732 -14.94400 -14.85616 -14.59878 -14.33231 -14.15777 -14.13713 -13.74547 -13.61828 -13.49249 -13.35257 -13.17374 -13.04132 -12.80692 -12.53061 -12.32796 -12.23289 -12.19077 -12.02311 -11.62045 -11.46330 -11.02577 -10.75223 -10.67507 -10.28464 -10.01304 -9.98516 -9.83557 -9.31744 -4.91151 -0.28930 0.15045 0.24613 0.34478 1.28232 1.61143 1.72197 1.89775 2.01860 2.02742 2.60899 2.70935 3.10430 3.37691 3.42332 3.51082 3.57032 3.63334 3.67195 3.77989 3.79644 3.82983 4.01563 4.06691 4.11897 4.16178 4.19315 4.21092 4.32641 4.38059 4.43925 4.51153 4.51680 4.64228 4.65905 4.72197 4.80369 4.87991 4.92769 4.94227 4.97851 5.05934 5.16783 5.21411 5.32006 5.34655 5.39212 5.42061 5.45161 5.67828 5.80854 6.28766 6.40186 6.45046 6.83847 7.05551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.778 3.222 4 C -0.080 4.080 5 C -0.156 4.156 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.327 6.327 10 C 0.118 3.882 11 C -0.053 4.053 12 C -0.149 4.149 13 C 0.553 3.447 14 O -0.573 6.573 15 N -0.699 5.699 16 C 0.120 3.880 17 H 0.086 0.914 18 C -0.134 4.134 19 C 0.082 3.918 20 H 0.100 0.900 21 O -0.576 6.576 22 C -0.177 4.177 23 C -0.076 4.076 24 C -0.122 4.122 25 C -0.089 4.089 26 C -0.123 4.123 27 C -0.139 4.139 28 H 0.386 0.614 29 H 0.125 0.875 30 H -0.300 1.300 31 H -0.280 1.280 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.399 0.601 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.152 0.848 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -7.109 2.882 8.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.196 4.196 3 Si 0.683 3.317 4 C -0.081 4.081 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.241 6.241 10 C 0.044 3.956 11 C -0.054 4.054 12 C -0.152 4.152 13 C 0.342 3.658 14 O -0.455 6.455 15 N -0.351 5.351 16 C 0.015 3.985 17 H 0.105 0.895 18 C -0.172 4.172 19 C 0.022 3.978 20 H 0.117 0.883 21 O -0.385 6.385 22 C -0.216 4.216 23 C -0.094 4.094 24 C -0.140 4.140 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.158 4.158 28 H 0.235 0.765 29 H 0.143 0.857 30 H -0.228 1.228 31 H -0.206 1.206 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.250 0.750 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.170 0.830 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.046 -5.870 2.241 6.983 hybrid contribution -0.560 -0.350 0.666 0.938 sum 2.486 -6.220 2.908 7.302 Atomic orbital electron populations 1.86570 1.18422 1.80522 1.50082 1.25376 0.83534 1.12468 0.98173 0.93829 0.90247 0.71191 0.76466 1.20173 0.97846 0.93138 0.96897 1.21200 1.00761 1.00824 0.94568 1.21223 0.97320 0.93187 0.97541 1.21538 1.04219 0.96704 1.00509 1.19170 0.95826 0.82779 0.95099 1.85929 1.74737 1.20518 1.42940 1.21485 0.98832 0.90213 0.85077 1.19712 0.97568 0.93414 0.94749 1.19677 1.04413 0.95666 0.95435 1.18578 0.78674 0.85783 0.82720 1.90735 1.57678 1.17495 1.79556 1.45786 1.55617 1.13461 1.20236 1.22502 0.91653 0.98636 0.85729 0.89540 1.23520 0.95912 1.02485 0.95249 1.22595 0.96883 0.87747 0.90587 0.88264 1.86437 1.32065 1.41666 1.78300 1.24158 0.96223 1.03189 0.98072 1.21597 0.95939 0.92330 0.99569 1.21584 0.97516 1.01817 0.93071 1.21778 0.97055 0.92753 0.99128 1.21120 0.98315 0.96464 0.98177 1.20333 1.03911 0.94429 0.97133 0.76459 0.85692 1.22849 1.20601 0.83335 0.83102 0.85227 0.90555 0.90881 0.74480 0.90894 0.85307 0.74992 0.87126 0.91743 0.82050 0.81902 0.83000 0.84966 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.92 12.83 -148.98 -1.91 -4.83 16 2 C -0.09 -0.19 2.80 71.24 0.20 0.01 16 3 Si 0.78 -0.45 29.87 68.60 2.05 1.60 16 4 C -0.08 -0.35 5.35 -19.88 -0.11 -0.45 16 5 C -0.16 -0.37 8.67 22.28 0.19 -0.18 16 6 C -0.07 -0.28 10.04 22.26 0.22 -0.06 16 7 C -0.21 -1.65 9.04 22.37 0.20 -1.45 16 8 C 0.12 1.13 6.69 22.51 0.15 1.28 16 9 O -0.33 -3.43 8.62 -92.40 -0.80 -4.22 16 10 C 0.12 1.12 3.38 71.24 0.24 1.36 16 11 C -0.05 -0.36 5.91 -19.61 -0.12 -0.47 16 12 C -0.15 -0.49 5.87 -20.09 -0.12 -0.61 16 13 C 0.55 3.09 7.75 86.79 0.67 3.76 16 14 O -0.57 -7.34 13.01 -3.87 -0.05 -7.39 16 15 N -0.70 0.96 5.31 -442.91 -2.35 -1.39 16 16 C 0.12 0.05 4.17 45.52 0.19 0.24 16 17 H 0.09 0.67 7.46 -2.38 -0.02 0.65 16 18 C -0.13 0.57 7.66 31.12 0.24 0.81 16 19 C 0.08 -0.33 5.28 31.12 0.16 -0.16 16 20 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 21 O -0.58 -0.08 13.59 -148.98 -2.02 -2.11 16 22 C -0.18 0.50 7.71 31.12 0.24 0.74 16 23 C -0.08 0.28 9.54 22.53 0.21 0.50 16 24 C -0.12 0.56 10.03 22.23 0.22 0.79 16 25 C -0.09 0.13 10.04 22.33 0.22 0.36 16 26 C -0.12 -0.49 9.37 22.23 0.21 -0.29 16 27 C -0.14 -1.11 9.62 22.37 0.22 -0.89 16 28 H 0.39 -0.10 8.70 -74.06 -0.64 -0.74 16 29 H 0.13 0.08 7.96 -2.39 -0.02 0.06 16 30 H -0.30 -2.00 7.11 99.48 0.71 -1.30 16 31 H -0.28 -0.76 7.01 99.48 0.70 -0.06 16 32 H 0.15 -0.35 4.84 -2.91 -0.01 -0.36 16 33 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 34 H 0.13 1.09 6.30 -2.91 -0.02 1.07 16 35 H 0.08 0.85 6.85 -2.38 -0.02 0.83 16 36 H 0.07 0.85 6.88 -2.39 -0.02 0.83 16 37 H 0.42 -3.57 6.76 -92.71 -0.63 -4.19 16 38 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.13 -1.34 8.12 -2.39 -0.02 -1.35 16 40 H 0.40 -3.16 9.12 -74.06 -0.68 -3.83 16 41 H 0.11 -0.72 8.14 -2.38 -0.02 -0.74 16 42 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.16 -1.82 6.41 -2.91 -0.02 -1.84 16 44 H 0.16 -1.74 8.06 -2.91 -0.02 -1.76 16 45 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 46 H 0.13 0.64 7.00 -2.91 -0.02 0.61 16 47 H 0.13 1.01 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -23.78 387.47 -2.50 -26.28 By element: Atomic # 1 Polarization: -12.34 SS G_CDS: -0.87 Total: -13.21 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 3.46 Total: 5.27 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -2.35 Total: -1.39 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -4.78 Total: -18.56 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.05 Total: 1.60 kcal Total: -23.78 -2.50 -26.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_4557126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.730 kcal (2) G-P(sol) polarization free energy of solvation -23.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds