Wall clock time and date at job start Sat Mar 6 2021 19:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86294 * 109.46742 * 2 1 4 4 C 1.50695 * 109.46805 * 119.99758 * 2 1 3 5 5 C 1.32770 * 124.71403 * 65.27838 * 4 2 1 6 6 C 1.44422 * 113.08643 * 180.17708 * 5 4 2 7 7 C 1.47192 * 123.46514 * 179.80681 * 6 5 4 8 8 O 1.21643 * 119.99750 * 359.73018 * 7 6 5 9 9 N 1.34777 * 120.00208 * 179.45691 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27760 * 9 7 6 11 11 H 1.08995 * 112.84615 * 334.66197 * 10 9 7 12 12 C 1.53775 * 113.61442 * 105.85931 * 10 9 7 13 13 C 1.54055 * 86.98513 * 89.16201 * 12 10 9 14 14 H 1.09005 * 113.68767 * 270.87298 * 13 12 10 15 15 O 1.42897 * 113.61942 * 139.98175 * 13 12 10 16 16 C 1.53780 * 87.07878 * 25.42909 * 13 12 10 17 17 C 1.36014 * 113.07663 * 359.54102 * 6 5 4 18 18 S 1.70447 * 110.81627 * 0.24270 * 17 6 5 19 19 H 0.96701 * 114.00067 * 60.00626 * 1 2 3 20 20 H 1.08997 * 109.46972 * 240.00042 * 2 1 3 21 21 H 1.48500 * 110.00133 * 298.67970 * 3 2 1 22 22 H 1.48497 * 110.00088 * 60.00054 * 3 2 1 23 23 H 1.08004 * 123.46056 * 359.97438 * 5 4 2 24 24 H 0.97000 * 119.99736 * 0.27034 * 9 7 6 25 25 H 1.09005 * 113.61646 * 203.66312 * 12 10 9 26 26 H 1.09001 * 113.62209 * 334.56791 * 12 10 9 27 27 H 0.96693 * 114.00849 * 82.50447 * 15 13 12 28 28 H 1.08996 * 113.61415 * 220.02737 * 16 13 12 29 29 H 1.08996 * 113.61080 * 89.11793 * 16 13 12 30 30 H 1.07993 * 124.58980 * 180.24593 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.7530 -2.0014 1.4840 6 6 2.3357 -2.4180 2.7380 7 6 2.2692 -3.7983 3.2451 8 8 1.6964 -4.6561 2.6003 9 7 2.8475 -4.1128 4.4211 10 6 2.7865 -5.4879 4.9228 11 1 1.9304 -6.0414 4.5373 12 6 4.1176 -6.2480 4.8000 13 6 4.4670 -5.6977 6.1958 14 1 4.9721 -4.7321 6.1720 15 8 5.1244 -6.6472 7.0374 16 6 2.9535 -5.5951 6.4478 17 6 2.9573 -1.4052 3.3997 18 16 2.8398 0.0524 2.5240 19 1 -0.3933 0.4416 -0.7651 20 1 1.7924 -0.5138 -0.8900 21 1 1.5878 2.4585 -1.2242 22 1 1.5614 2.4678 1.2085 23 1 1.2235 -2.6706 0.8220 24 1 3.3043 -3.4287 4.9352 25 1 4.0009 -7.3315 4.7745 26 1 4.7636 -5.8722 4.0066 27 1 6.0766 -6.7162 6.8837 28 1 2.6603 -4.6924 6.9837 29 1 2.5192 -6.5004 6.8719 30 1 3.4575 -1.5104 4.3509 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_6894386.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:40:15 Heat of formation + Delta-G solvation = -54.745095 kcal Electronic energy + Delta-G solvation = -16428.874588 eV Core-core repulsion = 13511.391143 eV Total energy + Delta-G solvation = -2917.483445 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49288 -39.87945 -38.67474 -37.28473 -36.41354 -34.00173 -31.73438 -26.98231 -26.81684 -26.45386 -24.61571 -22.15090 -20.67333 -20.54352 -18.83051 -18.69339 -18.42941 -18.00175 -16.83125 -16.47438 -16.18813 -16.04885 -15.63214 -15.32877 -14.78179 -14.20065 -13.97201 -13.87538 -13.79166 -13.51721 -13.43239 -12.86047 -12.72574 -12.45108 -12.41819 -12.04966 -11.52959 -11.11149 -10.77877 -10.60999 -10.27043 -9.98304 -9.47782 -5.05209 -0.36739 0.35226 0.67891 0.78523 1.20149 1.57144 1.87799 1.96302 2.19550 3.26697 3.29170 3.40828 3.61523 3.63976 3.78466 3.85453 3.98054 4.01455 4.24699 4.40280 4.55025 4.69038 4.70711 4.73589 4.88840 4.91460 4.97117 5.02505 5.14199 5.45354 6.38716 6.51912 6.87224 7.08100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.052 4.052 3 Si 0.725 3.275 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.183 4.183 7 C 0.579 3.421 8 O -0.582 6.582 9 N -0.693 5.693 10 C 0.116 3.884 11 H 0.086 0.914 12 C -0.179 4.179 13 C 0.083 3.917 14 H 0.106 0.894 15 O -0.579 6.579 16 C -0.131 4.131 17 C -0.189 4.189 18 S 0.252 5.748 19 H 0.398 0.602 20 H 0.101 0.899 21 H -0.258 1.258 22 H -0.267 1.267 23 H 0.133 0.867 24 H 0.416 0.584 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.396 0.604 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 5.361 1.139 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.162 4.162 3 Si 0.626 3.374 4 C -0.327 4.327 5 C -0.107 4.107 6 C -0.201 4.201 7 C 0.367 3.633 8 O -0.463 6.463 9 N -0.345 5.345 10 C 0.010 3.990 11 H 0.104 0.896 12 C -0.218 4.218 13 C 0.024 3.976 14 H 0.124 0.876 15 O -0.388 6.388 16 C -0.169 4.169 17 C -0.327 4.327 18 S 0.518 5.482 19 H 0.249 0.751 20 H 0.119 0.881 21 H -0.182 1.182 22 H -0.193 1.193 23 H 0.151 0.849 24 H 0.254 0.746 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.246 0.754 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.771 6.675 1.718 8.989 hybrid contribution -1.185 -1.672 -0.962 2.264 sum 4.585 5.003 0.756 6.828 Atomic orbital electron populations 1.86571 1.18282 1.80745 1.51202 1.24411 0.84107 1.11485 0.96180 0.94475 0.90440 0.72329 0.80202 1.23815 1.09058 0.97214 1.02651 1.21001 0.98788 0.95126 0.95822 1.20030 1.08227 0.93864 0.97959 1.17900 0.77365 0.87251 0.80813 1.90796 1.45527 1.51243 1.58776 1.45352 1.56663 1.11049 1.21398 1.21614 0.99076 0.82849 0.95449 0.89573 1.24169 0.97204 1.01378 0.99039 1.23541 0.93095 0.92570 0.88377 0.87639 1.86487 1.27382 1.62448 1.62449 1.23417 0.95052 1.04502 0.93932 1.26197 1.03060 0.97688 1.05748 1.82974 1.48234 1.07813 1.09187 0.75065 0.88131 1.18227 1.19316 0.84893 0.74570 0.88997 0.90781 0.75350 0.88622 0.88347 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.55 12.86 -148.98 -1.92 -3.47 16 2 C -0.05 0.03 2.93 71.23 0.21 0.24 16 3 Si 0.73 -2.64 30.92 68.60 2.12 -0.52 16 4 C -0.21 -0.46 5.69 24.51 0.14 -0.32 16 5 C -0.08 -0.51 9.95 22.67 0.23 -0.28 16 6 C -0.18 -0.69 5.98 -19.87 -0.12 -0.81 16 7 C 0.58 4.28 7.79 86.60 0.67 4.96 16 8 O -0.58 -9.98 16.42 -4.17 -0.07 -10.05 16 9 N -0.69 0.30 5.23 -443.51 -2.32 -2.02 16 10 C 0.12 0.13 4.30 45.52 0.20 0.33 16 11 H 0.09 0.56 7.50 -2.39 -0.02 0.54 16 12 C -0.18 0.09 7.73 31.21 0.24 0.33 16 13 C 0.08 -0.30 5.10 31.21 0.16 -0.14 16 14 H 0.11 -0.91 8.14 -2.38 -0.02 -0.93 16 15 O -0.58 0.38 13.67 -148.98 -2.04 -1.66 16 16 C -0.13 0.30 7.65 31.12 0.24 0.54 16 17 C -0.19 0.74 10.38 67.30 0.70 1.44 16 18 S 0.25 -0.88 20.20 -56.49 -1.14 -2.02 16 19 H 0.40 -2.33 8.74 -74.06 -0.65 -2.98 16 20 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 21 H -0.26 0.10 7.11 99.48 0.71 0.81 16 22 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 23 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 24 H 0.42 -3.31 7.20 -92.71 -0.67 -3.98 16 25 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 26 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.40 -3.42 9.12 -74.06 -0.68 -4.09 16 28 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.21 -2.57 7.01 -2.91 -0.02 -2.59 16 Total: 0.00 -22.66 277.31 -3.45 -26.11 By element: Atomic # 1 Polarization: -11.89 SS G_CDS: -0.75 Total: -12.65 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 2.66 Total: 6.27 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -2.32 Total: -2.02 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -4.02 Total: -15.18 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.12 Total: -0.52 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.14 Total: -2.02 kcal Total: -22.66 -3.45 -26.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_6894386.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.630 kcal (2) G-P(sol) polarization free energy of solvation -22.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds