Wall clock time and date at job start Sat Mar 6 2021 19:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37932 * 120.07312 * 2 1 4 4 C 1.38383 * 120.14445 * 180.27852 * 3 2 1 5 5 C 1.50696 * 119.85707 * 179.72032 * 4 3 2 6 6 C 1.38341 * 120.29018 * 359.73707 * 4 3 2 7 7 C 1.50703 * 119.92577 * 180.02562 * 6 4 3 8 8 O 1.42901 * 109.47157 * 75.02587 * 7 6 4 9 9 Si 1.86302 * 109.46978 * 195.02117 * 7 6 4 10 10 C 1.37980 * 120.14569 * 0.02807 * 6 4 3 11 11 C 1.39555 * 119.85396 * 359.97092 * 10 6 4 12 12 C 1.47845 * 120.14736 * 179.97438 * 11 10 6 13 13 O 1.21546 * 120.00334 * 173.76330 * 12 11 10 14 14 N 1.34776 * 119.99801 * 353.75806 * 12 11 10 15 15 C 1.46498 * 119.99883 * 179.97438 * 14 12 11 16 16 H 1.08990 * 112.91050 * 336.25441 * 15 14 12 17 17 C 1.53782 * 113.61121 * 107.50645 * 15 14 12 18 18 C 1.53791 * 87.08288 * 89.11418 * 17 15 14 19 19 H 1.08999 * 113.69168 * 270.87276 * 18 17 15 20 20 O 1.42898 * 113.61173 * 139.97751 * 18 17 15 21 21 C 1.53784 * 87.07792 * 25.43286 * 18 17 15 22 22 H 1.09000 * 109.47122 * 263.62587 * 1 2 3 23 23 H 1.08997 * 109.47212 * 23.62663 * 1 2 3 24 24 H 1.09004 * 109.47215 * 143.62708 * 1 2 3 25 25 H 1.07997 * 119.92896 * 0.02562 * 3 2 1 26 26 H 1.09005 * 109.47215 * 270.01889 * 5 4 3 27 27 H 1.08996 * 109.47318 * 30.01802 * 5 4 3 28 28 H 1.09000 * 109.47502 * 150.02009 * 5 4 3 29 29 H 1.08998 * 109.47278 * 315.02615 * 7 6 4 30 30 H 0.96703 * 113.99424 * 299.99701 * 8 7 6 31 31 H 1.48495 * 110.00324 * 298.68376 * 9 7 6 32 32 H 1.48504 * 109.99561 * 60.00214 * 9 7 6 33 33 H 1.08002 * 120.07475 * 179.97438 * 10 6 4 34 34 H 0.97003 * 120.00134 * 0.02562 * 14 12 11 35 35 H 1.09004 * 113.61611 * 203.66509 * 17 15 14 36 36 H 1.08997 * 113.61667 * 334.56947 * 17 15 14 37 37 H 0.96701 * 114.00167 * 82.50926 * 20 18 17 38 38 H 1.09004 * 113.61172 * 220.02015 * 21 18 17 39 39 H 1.09000 * 113.61426 * 89.11281 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 -0.0058 5 6 4.3306 2.5032 -0.0122 6 6 4.2813 0.0017 -0.0062 7 6 5.7882 0.0132 -0.0120 8 8 6.2669 0.3674 1.2871 9 14 6.4204 -1.6794 -0.4664 10 6 3.6020 -1.1993 -0.0013 11 6 2.2065 -1.2081 0.0046 12 6 1.4721 -2.4912 0.0092 13 8 0.2625 -2.4988 0.1287 14 7 2.1438 -3.6526 -0.1191 15 6 1.4161 -4.9241 -0.1139 16 1 0.4530 -4.8597 0.3922 17 6 1.3427 -5.5974 -1.4946 18 6 2.6674 -6.2928 -1.1387 19 1 3.5517 -5.7221 -1.4223 20 8 2.7288 -7.6570 -1.5597 21 6 2.2703 -6.1208 0.3370 22 1 -0.3633 -0.1141 1.0213 23 1 -0.3633 0.9415 -0.4118 24 1 -0.3634 -0.8275 -0.6095 25 1 1.6582 2.1289 0.0004 26 1 4.5065 2.8163 -1.0414 27 1 3.7410 3.2619 0.5026 28 1 5.2858 2.3777 0.4976 29 1 6.1433 0.7415 -0.7410 30 1 5.9760 1.2388 1.5892 31 1 5.9697 -2.6764 0.5376 32 1 5.9295 -2.0595 -1.8154 33 1 4.1491 -2.1305 -0.0020 34 1 3.1091 -3.6466 -0.2142 35 1 0.5035 -6.2848 -1.6011 36 1 1.4266 -4.8980 -2.3264 37 1 2.9781 -7.7717 -2.4869 38 1 3.1028 -5.8440 0.9838 39 1 1.6846 -6.9513 0.7312 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_9599494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:40:22 Heat of formation + Delta-G solvation = -63.675247 kcal Electronic energy + Delta-G solvation = -22065.507466 eV Core-core repulsion = 18747.409296 eV Total energy + Delta-G solvation = -3318.098170 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89039 -40.80134 -39.47732 -37.68667 -36.48873 -34.50677 -34.34677 -32.96894 -29.41182 -28.70888 -26.89817 -25.85060 -25.24100 -23.88238 -22.75301 -21.19098 -20.54259 -19.15035 -18.60142 -18.26654 -17.24217 -16.70106 -16.59578 -16.43654 -16.22549 -15.95785 -15.43783 -15.29468 -14.96222 -14.69934 -14.57074 -14.11470 -13.92325 -13.61956 -13.57564 -13.43033 -13.10103 -12.87613 -12.81220 -12.75505 -12.68361 -12.47692 -12.24319 -11.62582 -11.36894 -11.23037 -10.87990 -10.65674 -10.23133 -10.00711 -9.69251 -4.96044 -0.34211 0.07929 1.21856 1.49608 1.70091 1.79580 1.91939 2.57217 3.11092 3.29790 3.36111 3.42889 3.45597 3.53082 3.65500 3.68885 3.72150 3.82659 3.99471 4.03289 4.22965 4.35073 4.40266 4.41472 4.46794 4.60403 4.62920 4.67571 4.75741 4.77740 4.82613 4.85572 4.88556 4.93573 4.98769 5.18956 5.30465 5.42386 5.50137 5.70711 6.30792 6.40326 6.58286 7.08807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.127 4.127 4 C -0.040 4.040 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.083 4.083 8 O -0.533 6.533 9 Si 0.742 3.258 10 C -0.078 4.078 11 C -0.143 4.143 12 C 0.564 3.436 13 O -0.521 6.521 14 N -0.714 5.714 15 C 0.121 3.879 16 H 0.115 0.885 17 C -0.180 4.180 18 C 0.075 3.925 19 H 0.078 0.922 20 O -0.557 6.557 21 C -0.136 4.136 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.363 0.637 31 H -0.251 1.251 32 H -0.247 1.247 33 H 0.122 0.878 34 H 0.397 0.603 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.381 0.619 38 H 0.080 0.920 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 2.659 -2.260 5.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.010 4.010 3 C -0.144 4.144 4 C -0.041 4.041 5 C -0.182 4.182 6 C -0.129 4.129 7 C -0.191 4.191 8 O -0.340 6.340 9 Si 0.641 3.359 10 C -0.096 4.096 11 C -0.146 4.146 12 C 0.352 3.648 13 O -0.398 6.398 14 N -0.366 5.366 15 C 0.015 3.985 16 H 0.133 0.867 17 C -0.219 4.219 18 C 0.015 3.985 19 H 0.096 0.904 20 O -0.362 6.362 21 C -0.174 4.174 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.153 0.847 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.212 0.788 31 H -0.176 1.176 32 H -0.171 1.171 33 H 0.139 0.861 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.351 1.151 -1.797 3.973 hybrid contribution -0.542 1.295 -0.441 1.472 sum 2.809 2.446 -2.238 4.346 Atomic orbital electron populations 1.21130 0.89437 1.03425 1.03990 1.20110 0.97160 0.91153 0.92623 1.21030 0.93234 0.97935 1.02247 1.20010 0.93774 0.94865 0.95422 1.20986 1.00052 0.93772 1.03378 1.20038 0.96230 0.92781 1.03862 1.25297 0.91037 1.14170 0.88621 1.86811 1.75116 1.39972 1.32106 0.92923 0.91689 0.72372 0.78946 1.21055 0.93269 0.97375 0.97912 1.19635 0.92922 0.93348 1.08721 1.18217 0.87124 0.83445 0.75988 1.90753 1.13452 1.86908 1.48702 1.45666 1.10544 1.05405 1.74983 1.21671 0.97296 0.81869 0.97627 0.86737 1.24167 0.99718 1.00124 0.97885 1.23432 0.96155 0.82979 0.95886 0.90402 1.86533 1.92371 1.24923 1.32422 1.23477 1.00495 0.97819 0.95608 0.90218 0.91960 0.88546 0.84658 0.90015 0.90405 0.91208 0.90465 0.78793 1.17629 1.17149 0.86082 0.76790 0.87905 0.90778 0.77179 0.90165 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.25 8.73 36.01 0.31 0.07 16 2 C -0.01 -0.02 5.91 -104.23 -0.62 -0.64 16 3 C -0.13 -0.08 9.31 -39.64 -0.37 -0.45 16 4 C -0.04 0.00 5.87 -104.53 -0.61 -0.62 16 5 C -0.13 0.33 9.27 36.00 0.33 0.67 16 6 C -0.13 -0.11 5.26 -104.68 -0.55 -0.66 16 7 C -0.08 0.05 1.96 36.01 0.07 0.12 16 8 O -0.53 -0.05 12.64 -35.23 -0.45 -0.49 16 9 Si 0.74 -0.96 30.40 -169.99 -5.17 -6.12 16 10 C -0.08 -0.13 8.13 -39.19 -0.32 -0.45 16 11 C -0.14 -0.40 5.87 -104.97 -0.62 -1.01 16 12 C 0.56 1.97 7.70 -12.33 -0.09 1.87 16 13 O -0.52 -3.07 12.96 5.33 0.07 -3.00 16 14 N -0.71 -0.84 5.21 -53.96 -0.28 -1.12 16 15 C 0.12 0.09 4.32 -67.12 -0.29 -0.20 16 16 H 0.11 0.23 7.46 -51.93 -0.39 -0.16 16 17 C -0.18 -0.01 7.71 -25.91 -0.20 -0.21 16 18 C 0.07 -0.03 5.09 -25.91 -0.13 -0.16 16 19 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 20 O -0.56 -0.35 13.67 -35.23 -0.48 -0.83 16 21 C -0.14 0.02 7.66 -25.91 -0.20 -0.18 16 22 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.06 0.01 8.04 -51.93 -0.42 -0.40 16 24 H 0.10 0.35 5.87 -51.93 -0.30 0.05 16 25 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 26 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 27 H 0.08 -0.26 8.08 -51.93 -0.42 -0.68 16 28 H 0.07 -0.26 4.96 -51.93 -0.26 -0.52 16 29 H 0.08 -0.18 7.37 -51.93 -0.38 -0.56 16 30 H 0.36 -0.88 6.85 45.56 0.31 -0.57 16 31 H -0.25 -0.18 6.80 56.52 0.38 0.20 16 32 H -0.25 0.04 7.11 56.52 0.40 0.44 16 33 H 0.12 0.07 3.32 -52.49 -0.17 -0.11 16 34 H 0.40 -0.19 6.77 -40.82 -0.28 -0.47 16 35 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 36 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.38 -1.25 9.12 45.56 0.42 -0.84 16 38 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 314.49 15.07 4.74 4.74 Total: 0.00 -6.72 314.49 -9.34 -16.06 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -4.49 Total: -7.39 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.28 Total: -1.85 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -0.28 Total: -1.12 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.86 Total: -4.32 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.17 Total: -6.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -6.72 -9.34 -16.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_9599494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.613 kcal (2) G-P(sol) polarization free energy of solvation -6.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds