Wall clock time and date at job start Sat Mar 6 2021 19:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37932 * 120.07312 * 2 1 4 4 C 1.38383 * 120.14445 * 180.27852 * 3 2 1 5 5 C 1.50696 * 119.85707 * 179.72032 * 4 3 2 6 6 C 1.38341 * 120.29018 * 359.73707 * 4 3 2 7 7 C 1.50703 * 119.92577 * 180.02562 * 6 4 3 8 8 O 1.42901 * 109.47157 * 75.02587 * 7 6 4 9 9 Si 1.86302 * 109.46978 * 195.02117 * 7 6 4 10 10 C 1.37980 * 120.14569 * 0.02807 * 6 4 3 11 11 C 1.39555 * 119.85396 * 359.97092 * 10 6 4 12 12 C 1.47845 * 120.14736 * 179.97438 * 11 10 6 13 13 O 1.21546 * 120.00334 * 173.76330 * 12 11 10 14 14 N 1.34776 * 119.99801 * 353.75806 * 12 11 10 15 15 C 1.46498 * 119.99883 * 179.97438 * 14 12 11 16 16 H 1.08990 * 112.91050 * 336.25441 * 15 14 12 17 17 C 1.53782 * 113.61121 * 107.50645 * 15 14 12 18 18 C 1.53791 * 87.08288 * 89.11418 * 17 15 14 19 19 H 1.08999 * 113.69168 * 270.87276 * 18 17 15 20 20 O 1.42898 * 113.61173 * 139.97751 * 18 17 15 21 21 C 1.53784 * 87.07792 * 25.43286 * 18 17 15 22 22 H 1.09000 * 109.47122 * 263.62587 * 1 2 3 23 23 H 1.08997 * 109.47212 * 23.62663 * 1 2 3 24 24 H 1.09004 * 109.47215 * 143.62708 * 1 2 3 25 25 H 1.07997 * 119.92896 * 0.02562 * 3 2 1 26 26 H 1.09005 * 109.47215 * 270.01889 * 5 4 3 27 27 H 1.08996 * 109.47318 * 30.01802 * 5 4 3 28 28 H 1.09000 * 109.47502 * 150.02009 * 5 4 3 29 29 H 1.08998 * 109.47278 * 315.02615 * 7 6 4 30 30 H 0.96703 * 113.99424 * 299.99701 * 8 7 6 31 31 H 1.48495 * 110.00324 * 298.68376 * 9 7 6 32 32 H 1.48504 * 109.99561 * 60.00214 * 9 7 6 33 33 H 1.08002 * 120.07475 * 179.97438 * 10 6 4 34 34 H 0.97003 * 120.00134 * 0.02562 * 14 12 11 35 35 H 1.09004 * 113.61611 * 203.66509 * 17 15 14 36 36 H 1.08997 * 113.61667 * 334.56947 * 17 15 14 37 37 H 0.96701 * 114.00167 * 82.50926 * 20 18 17 38 38 H 1.09004 * 113.61172 * 220.02015 * 21 18 17 39 39 H 1.09000 * 113.61426 * 89.11281 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 -0.0058 5 6 4.3306 2.5032 -0.0122 6 6 4.2813 0.0017 -0.0062 7 6 5.7882 0.0132 -0.0120 8 8 6.2669 0.3674 1.2871 9 14 6.4204 -1.6794 -0.4664 10 6 3.6020 -1.1993 -0.0013 11 6 2.2065 -1.2081 0.0046 12 6 1.4721 -2.4912 0.0092 13 8 0.2625 -2.4988 0.1287 14 7 2.1438 -3.6526 -0.1191 15 6 1.4161 -4.9241 -0.1139 16 1 0.4530 -4.8597 0.3922 17 6 1.3427 -5.5974 -1.4946 18 6 2.6674 -6.2928 -1.1387 19 1 3.5517 -5.7221 -1.4223 20 8 2.7288 -7.6570 -1.5597 21 6 2.2703 -6.1208 0.3370 22 1 -0.3633 -0.1141 1.0213 23 1 -0.3633 0.9415 -0.4118 24 1 -0.3634 -0.8275 -0.6095 25 1 1.6582 2.1289 0.0004 26 1 4.5065 2.8163 -1.0414 27 1 3.7410 3.2619 0.5026 28 1 5.2858 2.3777 0.4976 29 1 6.1433 0.7415 -0.7410 30 1 5.9760 1.2388 1.5892 31 1 5.9697 -2.6764 0.5376 32 1 5.9295 -2.0595 -1.8154 33 1 4.1491 -2.1305 -0.0020 34 1 3.1091 -3.6466 -0.2142 35 1 0.5035 -6.2848 -1.6011 36 1 1.4266 -4.8980 -2.3264 37 1 2.9781 -7.7717 -2.4869 38 1 3.1028 -5.8440 0.9838 39 1 1.6846 -6.9513 0.7312 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_9599494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:40:21 Heat of formation + Delta-G solvation = -63.499407 kcal Electronic energy + Delta-G solvation = -22065.499841 eV Core-core repulsion = 18747.409296 eV Total energy + Delta-G solvation = -3318.090545 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01234 -40.83549 -39.59837 -37.67920 -36.56737 -34.60649 -34.37428 -33.01808 -29.46165 -28.65777 -26.92692 -25.88767 -25.28359 -23.89555 -22.84714 -21.29460 -20.60026 -19.21660 -18.59850 -18.28582 -17.30760 -16.75249 -16.66802 -16.50161 -16.35144 -15.97938 -15.46017 -15.31043 -14.97506 -14.79296 -14.56177 -14.13754 -13.86866 -13.67076 -13.62967 -13.39148 -13.08990 -12.92431 -12.84860 -12.73803 -12.70665 -12.53415 -12.25123 -11.64688 -11.35046 -11.18214 -10.89140 -10.84631 -10.39344 -10.05053 -9.75703 -4.86043 -0.43571 0.01505 1.30728 1.50823 1.61676 1.78863 1.88030 2.47086 3.15914 3.26219 3.31381 3.39485 3.44916 3.51163 3.65359 3.68749 3.78610 3.86114 4.00558 4.06161 4.32617 4.39348 4.42275 4.45355 4.56417 4.60181 4.61440 4.65471 4.70053 4.74780 4.77386 4.79911 4.89330 4.94890 5.02935 5.14262 5.30739 5.33496 5.37926 5.67527 6.16689 6.60189 6.76911 6.89322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.130 4.130 4 C -0.037 4.037 5 C -0.126 4.126 6 C -0.138 4.138 7 C -0.088 4.088 8 O -0.545 6.545 9 Si 0.791 3.209 10 C -0.087 4.087 11 C -0.162 4.162 12 C 0.558 3.442 13 O -0.554 6.554 14 N -0.705 5.705 15 C 0.115 3.885 16 H 0.098 0.902 17 C -0.175 4.175 18 C 0.080 3.920 19 H 0.094 0.906 20 O -0.575 6.575 21 C -0.133 4.133 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.374 0.626 31 H -0.283 1.283 32 H -0.263 1.263 33 H 0.126 0.874 34 H 0.405 0.595 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.396 0.604 38 H 0.087 0.913 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 3.844 -2.623 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.147 4.147 4 C -0.038 4.038 5 C -0.182 4.182 6 C -0.138 4.138 7 C -0.196 4.196 8 O -0.354 6.354 9 Si 0.693 3.307 10 C -0.106 4.106 11 C -0.165 4.165 12 C 0.348 3.652 13 O -0.434 6.434 14 N -0.357 5.357 15 C 0.010 3.990 16 H 0.116 0.884 17 C -0.214 4.214 18 C 0.021 3.979 19 H 0.112 0.888 20 O -0.383 6.383 21 C -0.171 4.171 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.225 0.775 31 H -0.210 1.210 32 H -0.188 1.188 33 H 0.143 0.857 34 H 0.242 0.758 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.907 2.337 -2.175 5.855 hybrid contribution -1.011 0.921 -0.322 1.405 sum 3.897 3.258 -2.497 5.660 Atomic orbital electron populations 1.21027 0.89742 1.03497 1.03133 1.20279 0.97237 0.91815 0.93453 1.21298 0.93788 0.98015 1.01628 1.20366 0.93712 0.95907 0.93770 1.21080 1.00438 0.92303 1.04352 1.20334 0.97257 0.92735 1.03520 1.25409 0.89920 1.15255 0.89028 1.86777 1.75194 1.41008 1.32417 0.92398 0.90745 0.70904 0.76670 1.21193 0.92927 0.98245 0.98200 1.19686 0.93498 0.93144 1.10208 1.18483 0.86887 0.84287 0.75585 1.90731 1.14754 1.87423 1.50499 1.45608 1.10931 1.05051 1.74063 1.21680 0.96924 0.82056 0.98343 0.88419 1.24117 1.00225 0.99924 0.97154 1.23436 0.96268 0.82848 0.95370 0.88847 1.86489 1.92509 1.25257 1.34024 1.23454 1.00427 0.97039 0.96202 0.91121 0.90109 0.90616 0.82655 0.88962 0.89364 0.89913 0.88170 0.77510 1.21012 1.18805 0.85679 0.75805 0.88129 0.91006 0.75324 0.89459 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 8.73 71.24 0.62 -0.05 16 2 C -0.03 -0.15 5.91 -19.61 -0.12 -0.27 16 3 C -0.13 -0.11 9.31 22.23 0.21 0.09 16 4 C -0.04 0.03 5.87 -19.81 -0.12 -0.08 16 5 C -0.13 0.95 9.27 71.23 0.66 1.61 16 6 C -0.14 -0.17 5.26 -19.90 -0.10 -0.28 16 7 C -0.09 0.22 1.96 71.24 0.14 0.36 16 8 O -0.55 0.63 12.64 -148.98 -1.88 -1.25 16 9 Si 0.79 -2.29 30.40 68.60 2.09 -0.20 16 10 C -0.09 -0.36 8.13 22.53 0.18 -0.18 16 11 C -0.16 -1.14 5.87 -20.09 -0.12 -1.26 16 12 C 0.56 5.14 7.70 86.79 0.67 5.81 16 13 O -0.55 -8.16 12.96 -3.86 -0.05 -8.21 16 14 N -0.71 -2.83 5.21 -442.92 -2.31 -5.13 16 15 C 0.12 0.37 4.32 45.52 0.20 0.57 16 16 H 0.10 0.65 7.46 -2.39 -0.02 0.63 16 17 C -0.18 -0.21 7.71 31.12 0.24 0.03 16 18 C 0.08 -0.04 5.09 31.12 0.16 0.11 16 19 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 20 O -0.57 -0.64 13.67 -148.98 -2.04 -2.68 16 21 C -0.13 -0.06 7.66 31.12 0.24 0.18 16 22 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 23 H 0.08 0.08 8.04 -2.39 -0.02 0.06 16 24 H 0.08 0.76 5.87 -2.39 -0.01 0.75 16 25 H 0.16 -0.61 8.06 -2.91 -0.02 -0.63 16 26 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 27 H 0.09 -0.81 8.08 -2.39 -0.02 -0.83 16 28 H 0.08 -0.83 4.96 -2.39 -0.01 -0.84 16 29 H 0.10 -0.69 7.37 -2.39 -0.02 -0.71 16 30 H 0.37 -2.46 6.85 -74.05 -0.51 -2.97 16 31 H -0.28 -0.63 6.80 99.48 0.68 0.05 16 32 H -0.26 0.13 7.11 99.48 0.71 0.83 16 33 H 0.13 0.26 3.32 -2.91 -0.01 0.25 16 34 H 0.41 0.09 6.77 -92.71 -0.63 -0.54 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.40 -2.74 9.12 -74.06 -0.68 -3.41 16 38 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 Total: 0.00 -16.67 314.49 -2.03 -18.70 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: -0.70 Total: -7.88 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 2.86 Total: 6.65 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -2.31 Total: -5.13 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -3.97 Total: -12.14 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.09 Total: -0.20 kcal Total: -16.67 -2.03 -18.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_9599494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.796 kcal (2) G-P(sol) polarization free energy of solvation -16.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds