Wall clock time and date at job start Sat Mar 6 2021 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47392 * 2 1 4 4 C 1.50702 * 109.46829 * 239.99729 * 2 1 3 5 5 C 1.34236 * 126.49855 * 104.97836 * 4 2 1 6 6 N 1.36834 * 109.93838 * 180.02562 * 5 4 2 7 7 C 1.46500 * 125.06103 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46923 * 265.00118 * 7 6 5 9 9 O 1.21279 * 120.00624 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99471 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99589 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.85395 * 336.20154 * 11 10 8 13 13 C 1.53780 * 113.61313 * 107.50644 * 11 10 8 14 14 C 1.53779 * 87.08343 * 89.11343 * 13 11 10 15 15 H 1.08994 * 113.69275 * 270.87653 * 14 13 11 16 16 O 1.42897 * 113.61409 * 139.98036 * 14 13 11 17 17 C 1.53778 * 113.61230 * 205.00032 * 11 10 8 18 18 C 1.37688 * 109.87351 * 0.02562 * 6 5 4 19 19 C 1.39091 * 133.51652 * 180.02562 * 18 6 5 20 20 C 1.37791 * 119.77910 * 179.97438 * 19 18 6 21 21 C 1.38785 * 120.66569 * 0.27776 * 20 19 18 22 22 C 1.36662 * 120.52759 * 359.43933 * 21 20 19 23 23 C 1.39592 * 119.76498 * 0.55200 * 22 21 20 24 24 H 0.96699 * 113.99840 * 59.99763 * 1 2 3 25 25 H 1.09000 * 109.46697 * 120.00471 * 2 1 3 26 26 H 1.48504 * 109.99897 * 298.68013 * 3 2 1 27 27 H 1.48503 * 109.99885 * 60.00219 * 3 2 1 28 28 H 1.07996 * 125.02793 * 0.06097 * 5 4 2 29 29 H 1.08994 * 109.47194 * 25.00597 * 7 6 5 30 30 H 1.09000 * 109.46623 * 145.00857 * 7 6 5 31 31 H 0.96992 * 120.00531 * 0.02562 * 10 8 7 32 32 H 1.09005 * 113.61706 * 203.66592 * 13 11 10 33 33 H 1.09009 * 113.61277 * 334.56295 * 13 11 10 34 34 H 0.96703 * 113.99899 * 82.50669 * 16 14 13 35 35 H 1.08995 * 113.61877 * 25.43755 * 17 11 10 36 36 H 1.09004 * 113.61063 * 156.33909 * 17 11 10 37 37 H 1.07997 * 120.11147 * 359.97438 * 19 18 6 38 38 H 1.08002 * 119.66240 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.73446 * 179.70213 * 21 20 19 40 40 H 1.08002 * 120.11431 * 180.28475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.4603 -0.1377 -2.3231 6 7 2.8019 -1.0991 -3.2350 7 6 3.4056 -0.8404 -4.5445 8 6 2.3251 -0.7842 -5.5935 9 8 1.1650 -0.9441 -5.2783 10 7 2.6481 -0.5554 -6.8819 11 6 1.5977 -0.5002 -7.9016 12 1 0.6979 -1.0433 -7.6124 13 6 1.3211 0.9191 -8.4250 14 6 2.4071 0.6563 -9.4816 15 1 3.4104 0.9311 -9.1562 16 8 2.0832 1.1696 -10.7752 17 6 2.0944 -0.8403 -9.3166 18 6 2.4926 -2.3457 -2.7389 19 6 2.6275 -3.6363 -3.2397 20 6 2.2137 -4.7108 -2.4828 21 6 1.6574 -4.5189 -1.2259 22 6 1.5207 -3.2600 -0.7121 23 6 1.9333 -2.1570 -1.4617 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5880 2.4585 -1.2243 27 1 1.5616 2.4678 1.2085 28 1 2.5967 0.9246 -2.4617 29 1 3.9364 0.1112 -4.5182 30 1 4.1055 -1.6403 -4.7862 31 1 3.5759 -0.4272 -7.1339 32 1 0.3232 1.0426 -8.8458 33 1 1.5828 1.7046 -7.7159 34 1 2.2777 2.1105 -10.8850 35 1 2.9803 -1.4753 -9.3276 36 1 1.3079 -1.1979 -9.9813 37 1 3.0551 -3.7957 -4.2185 38 1 2.3189 -5.7121 -2.8737 39 1 1.3337 -5.3716 -0.6475 40 1 1.0911 -3.1187 0.2687 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_9818708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:40:24 Heat of formation + Delta-G solvation = -11.937007 kcal Electronic energy + Delta-G solvation = -24497.415605 eV Core-core repulsion = 20859.682782 eV Total energy + Delta-G solvation = -3637.732823 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52186 -41.35647 -39.69310 -38.03626 -37.60122 -36.51546 -34.33610 -33.69258 -31.34767 -30.14085 -29.01371 -26.98280 -26.11357 -25.11563 -23.65876 -22.76963 -21.92705 -20.79113 -20.56156 -19.11193 -18.54486 -18.29899 -17.73491 -17.30802 -16.84393 -16.52507 -16.33730 -16.26259 -15.92156 -15.53056 -15.32978 -15.22977 -14.71895 -14.60654 -14.38503 -14.02768 -13.91780 -13.61207 -13.54441 -13.31393 -12.94547 -12.62494 -12.59514 -12.45804 -12.28357 -11.89720 -11.71047 -11.64196 -11.18436 -10.95877 -10.44482 -10.36112 -10.32470 -9.04222 -8.55311 -4.92637 0.26096 0.77684 1.29912 1.33825 1.39481 1.61255 1.69178 1.99576 2.04485 3.03115 3.09508 3.23822 3.37159 3.40182 3.48444 3.57968 3.63813 3.71366 3.75083 3.77397 3.84144 4.06095 4.30289 4.35604 4.37759 4.54516 4.57606 4.59857 4.69689 4.70967 4.74096 4.79105 4.84377 4.88996 4.98174 5.24222 5.30190 5.63354 5.79314 5.84809 5.88587 6.08099 6.27117 6.34417 6.51804 6.60076 6.92236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.037 4.037 3 Si 0.682 3.318 4 C -0.192 4.192 5 C 0.066 3.934 6 N -0.466 5.466 7 C 0.092 3.908 8 C 0.493 3.507 9 O -0.510 6.510 10 N -0.713 5.713 11 C 0.121 3.879 12 H 0.111 0.889 13 C -0.180 4.180 14 C 0.076 3.924 15 H 0.081 0.919 16 O -0.558 6.558 17 C -0.135 4.135 18 C 0.109 3.891 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.065 4.065 23 C -0.086 4.086 24 H 0.374 0.626 25 H 0.114 0.886 26 H -0.261 1.261 27 H -0.256 1.256 28 H 0.168 0.832 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.402 0.598 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.381 0.619 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 2.111 -3.100 8.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.148 4.148 3 Si 0.584 3.416 4 C -0.200 4.200 5 C -0.059 4.059 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.277 3.723 9 O -0.384 6.384 10 N -0.366 5.366 11 C 0.015 3.985 12 H 0.129 0.871 13 C -0.219 4.219 14 C 0.017 3.983 15 H 0.099 0.901 16 O -0.364 6.364 17 C -0.173 4.173 18 C 0.005 3.995 19 C -0.149 4.149 20 C -0.115 4.115 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.090 4.090 24 H 0.222 0.778 25 H 0.132 0.868 26 H -0.187 1.187 27 H -0.181 1.181 28 H 0.185 0.815 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.178 1.985 -2.677 7.019 hybrid contribution -0.429 0.541 -0.837 1.084 sum 5.749 2.526 -3.514 7.195 Atomic orbital electron populations 1.86595 1.18072 1.79930 1.49038 1.24295 0.83403 1.09756 0.97307 0.95359 0.91425 0.74516 0.80341 1.20588 1.09366 0.92366 0.97679 1.21577 1.01206 0.93928 0.89205 1.43192 1.53933 1.04671 1.13159 1.21580 0.94436 1.06115 0.81268 1.21081 0.90914 0.76847 0.83444 1.90821 1.19983 1.46962 1.80590 1.45658 1.10460 1.73748 1.06774 1.21659 0.92196 0.97649 0.86983 0.87128 1.24160 1.01419 0.97535 0.98805 1.23430 0.96672 0.95085 0.83120 0.90138 1.86540 1.87715 1.29811 1.32300 1.23456 1.03088 0.95410 0.95303 1.18169 1.01399 0.85817 0.94163 1.19957 1.05367 0.89264 1.00281 1.20831 0.98264 0.97957 0.94465 1.20678 1.02339 0.96975 0.96455 1.20314 0.97828 0.90918 0.99274 1.18936 1.03195 0.92774 0.94105 0.77836 0.86801 1.18651 1.18079 0.81460 0.85824 0.86237 0.76296 0.88100 0.90838 0.77127 0.90044 0.87544 0.86747 0.85709 0.85900 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.76 12.88 -35.23 -0.45 -2.21 16 2 C -0.04 -0.05 3.06 36.01 0.11 0.06 16 3 Si 0.68 -0.34 30.82 -169.99 -5.24 -5.58 16 4 C -0.19 -0.44 5.57 -102.71 -0.57 -1.02 16 5 C 0.07 0.05 9.89 -16.73 -0.17 -0.11 16 6 N -0.47 -0.47 2.27 -115.71 -0.26 -0.74 16 7 C 0.09 -0.26 6.48 -5.19 -0.03 -0.30 16 8 C 0.49 -0.08 7.90 -10.98 -0.09 -0.17 16 9 O -0.51 -2.66 16.02 5.56 0.09 -2.57 16 10 N -0.71 2.04 5.26 -53.01 -0.28 1.77 16 11 C 0.12 -0.16 4.32 -67.12 -0.29 -0.45 16 12 H 0.11 0.11 7.46 -51.93 -0.39 -0.27 16 13 C -0.18 0.28 7.71 -25.92 -0.20 0.08 16 14 C 0.08 -0.18 5.09 -25.92 -0.13 -0.31 16 15 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 16 O -0.56 0.34 13.67 -35.23 -0.48 -0.15 16 17 C -0.13 0.28 7.66 -25.92 -0.20 0.08 16 18 C 0.11 0.35 6.80 -83.99 -0.57 -0.22 16 19 C -0.13 -0.31 10.00 -39.43 -0.39 -0.70 16 20 C -0.10 -0.20 10.01 -39.54 -0.40 -0.60 16 21 C -0.15 -0.37 9.97 -39.95 -0.40 -0.77 16 22 C -0.06 -0.23 10.05 -39.65 -0.40 -0.63 16 23 C -0.09 -0.35 6.35 -105.14 -0.67 -1.01 16 24 H 0.37 0.35 8.70 45.56 0.40 0.74 16 25 H 0.11 0.09 7.96 -51.93 -0.41 -0.32 16 26 H -0.26 -0.28 7.00 56.52 0.40 0.12 16 27 H -0.26 -0.72 7.11 56.52 0.40 -0.32 16 28 H 0.17 -0.31 6.27 -52.49 -0.33 -0.64 16 29 H 0.12 -0.78 8.12 -51.93 -0.42 -1.20 16 30 H 0.12 -0.61 8.14 -51.93 -0.42 -1.03 16 31 H 0.40 -2.46 8.70 -40.82 -0.36 -2.82 16 32 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.07 -0.11 8.14 -51.92 -0.42 -0.54 16 34 H 0.38 -1.70 9.12 45.56 0.42 -1.28 16 35 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.11 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 39 H 0.12 0.08 8.06 -52.49 -0.42 -0.35 16 40 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 343.31 15.07 5.17 5.17 Total: 0.00 -11.28 343.31 -10.37 -21.65 By element: Atomic # 1 Polarization: -6.78 SS G_CDS: -4.53 Total: -11.31 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -4.39 Total: -6.04 kcal Atomic # 7 Polarization: 1.57 SS G_CDS: -0.54 Total: 1.03 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.85 Total: -4.92 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -5.24 Total: -5.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -11.28 -10.37 -21.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_9818708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.715 kcal (2) G-P(sol) polarization free energy of solvation -11.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds