Wall clock time and date at job start Sat Mar 6 2021 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47392 * 2 1 4 4 C 1.50702 * 109.46829 * 239.99729 * 2 1 3 5 5 C 1.34236 * 126.49855 * 104.97836 * 4 2 1 6 6 N 1.36834 * 109.93838 * 180.02562 * 5 4 2 7 7 C 1.46500 * 125.06103 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46923 * 265.00118 * 7 6 5 9 9 O 1.21279 * 120.00624 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99471 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99589 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.85395 * 336.20154 * 11 10 8 13 13 C 1.53780 * 113.61313 * 107.50644 * 11 10 8 14 14 C 1.53779 * 87.08343 * 89.11343 * 13 11 10 15 15 H 1.08994 * 113.69275 * 270.87653 * 14 13 11 16 16 O 1.42897 * 113.61409 * 139.98036 * 14 13 11 17 17 C 1.53778 * 113.61230 * 205.00032 * 11 10 8 18 18 C 1.37688 * 109.87351 * 0.02562 * 6 5 4 19 19 C 1.39091 * 133.51652 * 180.02562 * 18 6 5 20 20 C 1.37791 * 119.77910 * 179.97438 * 19 18 6 21 21 C 1.38785 * 120.66569 * 0.27776 * 20 19 18 22 22 C 1.36662 * 120.52759 * 359.43933 * 21 20 19 23 23 C 1.39592 * 119.76498 * 0.55200 * 22 21 20 24 24 H 0.96699 * 113.99840 * 59.99763 * 1 2 3 25 25 H 1.09000 * 109.46697 * 120.00471 * 2 1 3 26 26 H 1.48504 * 109.99897 * 298.68013 * 3 2 1 27 27 H 1.48503 * 109.99885 * 60.00219 * 3 2 1 28 28 H 1.07996 * 125.02793 * 0.06097 * 5 4 2 29 29 H 1.08994 * 109.47194 * 25.00597 * 7 6 5 30 30 H 1.09000 * 109.46623 * 145.00857 * 7 6 5 31 31 H 0.96992 * 120.00531 * 0.02562 * 10 8 7 32 32 H 1.09005 * 113.61706 * 203.66592 * 13 11 10 33 33 H 1.09009 * 113.61277 * 334.56295 * 13 11 10 34 34 H 0.96703 * 113.99899 * 82.50669 * 16 14 13 35 35 H 1.08995 * 113.61877 * 25.43755 * 17 11 10 36 36 H 1.09004 * 113.61063 * 156.33909 * 17 11 10 37 37 H 1.07997 * 120.11147 * 359.97438 * 19 18 6 38 38 H 1.08002 * 119.66240 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.73446 * 179.70213 * 21 20 19 40 40 H 1.08002 * 120.11431 * 180.28475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.4603 -0.1377 -2.3231 6 7 2.8019 -1.0991 -3.2350 7 6 3.4056 -0.8404 -4.5445 8 6 2.3251 -0.7842 -5.5935 9 8 1.1650 -0.9441 -5.2783 10 7 2.6481 -0.5554 -6.8819 11 6 1.5977 -0.5002 -7.9016 12 1 0.6979 -1.0433 -7.6124 13 6 1.3211 0.9191 -8.4250 14 6 2.4071 0.6563 -9.4816 15 1 3.4104 0.9311 -9.1562 16 8 2.0832 1.1696 -10.7752 17 6 2.0944 -0.8403 -9.3166 18 6 2.4926 -2.3457 -2.7389 19 6 2.6275 -3.6363 -3.2397 20 6 2.2137 -4.7108 -2.4828 21 6 1.6574 -4.5189 -1.2259 22 6 1.5207 -3.2600 -0.7121 23 6 1.9333 -2.1570 -1.4617 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5880 2.4585 -1.2243 27 1 1.5616 2.4678 1.2085 28 1 2.5967 0.9246 -2.4617 29 1 3.9364 0.1112 -4.5182 30 1 4.1055 -1.6403 -4.7862 31 1 3.5759 -0.4272 -7.1339 32 1 0.3232 1.0426 -8.8458 33 1 1.5828 1.7046 -7.7159 34 1 2.2777 2.1105 -10.8850 35 1 2.9803 -1.4753 -9.3276 36 1 1.3079 -1.1979 -9.9813 37 1 3.0551 -3.7957 -4.2185 38 1 2.3189 -5.7121 -2.8737 39 1 1.3337 -5.3716 -0.6475 40 1 1.0911 -3.1187 0.2687 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_9818708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:40:24 Heat of formation + Delta-G solvation = -16.372498 kcal Electronic energy + Delta-G solvation = -24497.607943 eV Core-core repulsion = 20859.682782 eV Total energy + Delta-G solvation = -3637.925160 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55906 -41.28392 -39.64884 -38.16308 -37.71310 -36.42821 -34.33049 -33.66211 -31.40993 -30.24921 -28.99662 -26.84050 -26.12209 -25.03075 -23.75482 -22.82389 -21.90442 -20.75419 -20.55061 -19.00033 -18.61622 -18.17715 -17.76936 -17.34291 -16.77666 -16.46345 -16.40790 -16.27007 -15.98590 -15.49753 -15.36882 -15.16407 -14.79876 -14.71164 -14.41602 -14.10830 -13.77997 -13.58096 -13.49360 -13.19784 -12.85154 -12.73704 -12.57754 -12.47281 -12.39403 -12.01453 -11.74783 -11.54450 -11.22913 -10.80234 -10.56788 -10.46565 -10.23182 -9.16828 -8.64481 -4.90152 0.13439 0.62938 1.33293 1.37932 1.40373 1.60692 1.68828 1.99232 2.12253 2.94031 3.24789 3.40411 3.48815 3.55147 3.59298 3.67900 3.70724 3.78504 3.85058 3.99419 4.04089 4.15073 4.21598 4.29569 4.49076 4.51409 4.58378 4.67569 4.70162 4.71204 4.78383 4.87778 4.89185 4.90108 4.98720 5.13272 5.43061 5.50341 5.65909 5.72826 5.74467 6.16931 6.22015 6.41839 6.52940 6.85213 7.08005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.788 3.212 4 C -0.215 4.215 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.089 3.911 8 C 0.493 3.507 9 O -0.573 6.573 10 N -0.693 5.693 11 C 0.119 3.881 12 H 0.079 0.921 13 C -0.180 4.180 14 C 0.083 3.917 15 H 0.110 0.890 16 O -0.582 6.582 17 C -0.133 4.133 18 C 0.091 3.909 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.154 4.154 22 C -0.088 4.088 23 C -0.116 4.116 24 H 0.381 0.619 25 H 0.110 0.890 26 H -0.274 1.274 27 H -0.304 1.304 28 H 0.198 0.802 29 H 0.168 0.832 30 H 0.148 0.852 31 H 0.423 0.577 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.396 0.604 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 3.021 -4.392 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.691 3.309 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.279 3.721 9 O -0.451 6.451 10 N -0.347 5.347 11 C 0.013 3.987 12 H 0.098 0.902 13 C -0.219 4.219 14 C 0.024 3.976 15 H 0.128 0.872 16 O -0.390 6.390 17 C -0.171 4.171 18 C -0.014 4.014 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.173 4.173 22 C -0.107 4.107 23 C -0.120 4.120 24 H 0.229 0.771 25 H 0.128 0.872 26 H -0.200 1.200 27 H -0.232 1.232 28 H 0.214 0.786 29 H 0.186 0.814 30 H 0.166 0.834 31 H 0.261 0.739 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.246 0.754 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.653 2.882 -4.025 9.969 hybrid contribution -1.223 0.241 -0.461 1.329 sum 7.430 3.123 -4.486 9.224 Atomic orbital electron populations 1.86555 1.19584 1.80583 1.49645 1.24739 0.82500 1.12142 0.97139 0.94191 0.89538 0.70390 0.76771 1.20710 1.10904 0.91881 0.98790 1.22020 0.99528 0.95095 0.88464 1.43427 1.53349 1.03798 1.14297 1.22011 0.93508 1.09539 0.78472 1.21596 0.90605 0.75566 0.84368 1.90810 1.22634 1.50064 1.81595 1.45470 1.11166 1.72330 1.05711 1.21518 0.91857 0.97648 0.87705 0.90232 1.24112 1.01216 0.97273 0.99280 1.23517 0.97460 0.94394 0.82212 0.87240 1.86498 1.88088 1.31365 1.33073 1.23416 1.03242 0.96291 0.94129 1.18395 1.01740 0.87007 0.94222 1.20257 1.05062 0.89111 1.01013 1.21134 0.98137 0.99056 0.94316 1.20922 1.02272 0.97056 0.97042 1.20457 0.98974 0.91720 0.99557 1.19346 1.03819 0.93822 0.95033 0.77063 0.87224 1.19987 1.23175 0.78567 0.81447 0.83432 0.73894 0.89687 0.90522 0.75357 0.88398 0.89001 0.84860 0.83705 0.84619 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.82 12.88 -148.98 -1.92 -6.74 16 2 C -0.06 -0.23 3.06 71.24 0.22 -0.01 16 3 Si 0.79 -1.03 30.82 68.60 2.11 1.08 16 4 C -0.22 -1.19 5.57 -18.63 -0.10 -1.29 16 5 C 0.07 0.07 9.89 83.00 0.82 0.89 16 6 N -0.47 -0.50 2.27 -520.00 -1.18 -1.68 16 7 C 0.09 -0.73 6.48 85.63 0.56 -0.18 16 8 C 0.49 -0.65 7.90 87.66 0.69 0.04 16 9 O -0.57 -6.49 16.02 -3.03 -0.05 -6.54 16 10 N -0.69 5.02 5.26 -440.03 -2.32 2.71 16 11 C 0.12 -0.29 4.32 45.52 0.20 -0.09 16 12 H 0.08 0.34 7.46 -2.39 -0.02 0.32 16 13 C -0.18 0.57 7.71 31.12 0.24 0.81 16 14 C 0.08 -0.50 5.09 31.12 0.16 -0.34 16 15 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 16 O -0.58 1.17 13.67 -148.98 -2.04 -0.86 16 17 C -0.13 0.62 7.66 31.12 0.24 0.86 16 18 C 0.09 0.63 6.80 39.03 0.27 0.90 16 19 C -0.13 -0.67 10.00 22.37 0.22 -0.44 16 20 C -0.11 -0.52 10.01 22.29 0.22 -0.29 16 21 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 22 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 23 C -0.12 -1.13 6.35 -20.20 -0.13 -1.25 16 24 H 0.38 1.44 8.70 -74.06 -0.64 0.79 16 25 H 0.11 0.40 7.96 -2.39 -0.02 0.39 16 26 H -0.27 -0.19 7.00 99.48 0.70 0.51 16 27 H -0.30 -2.00 7.11 99.48 0.71 -1.29 16 28 H 0.20 -1.18 6.27 -2.91 -0.02 -1.20 16 29 H 0.17 -2.85 8.12 -2.39 -0.02 -2.87 16 30 H 0.15 -2.01 8.14 -2.39 -0.02 -2.03 16 31 H 0.42 -6.47 8.70 -92.71 -0.81 -7.28 16 32 H 0.08 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 34 H 0.40 -3.93 9.12 -74.05 -0.68 -4.60 16 35 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 38 H 0.15 -0.04 8.06 -2.91 -0.02 -0.07 16 39 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 40 H 0.12 1.02 8.06 -2.91 -0.02 0.99 16 Total: 0.00 -30.14 343.31 -2.35 -32.49 By element: Atomic # 1 Polarization: -17.61 SS G_CDS: -1.01 Total: -18.62 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.04 Total: -1.84 kcal Atomic # 7 Polarization: 4.52 SS G_CDS: -3.50 Total: 1.02 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -4.00 Total: -14.14 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.11 Total: 1.08 kcal Total: -30.14 -2.35 -32.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_9818708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.120 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds