Wall clock time and date at job start Sat Mar 6 2021 17:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.52996 * 109.46806 * 120.00021 * 2 1 3 5 5 C 1.53002 * 109.46969 * 174.99874 * 4 2 1 6 6 O 1.42905 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.42899 * 113.99778 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47145 * 330.00410 * 7 6 5 9 9 C 1.52996 * 109.47031 * 90.00250 * 7 6 5 10 10 C 1.53002 * 109.47218 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47055 * 300.00170 * 10 9 7 12 12 H 1.09003 * 109.46993 * 299.99435 * 11 10 9 13 13 N 1.46501 * 109.46896 * 179.97438 * 11 10 9 14 14 C 1.34781 * 119.99805 * 84.99815 * 13 11 10 15 15 O 1.21513 * 120.00261 * 0.02562 * 14 13 11 16 16 C 1.48178 * 119.99953 * 179.97438 * 14 13 11 17 17 N 1.32720 * 119.71841 * 359.72809 * 16 14 13 18 18 C 1.31520 * 121.63786 * 179.74971 * 17 16 14 19 19 C 1.38564 * 120.90472 * 0.52564 * 18 17 16 20 20 C 1.50702 * 120.32515 * 179.71810 * 19 18 17 21 21 O 1.42898 * 109.47179 * 245.02684 * 20 19 18 22 22 Si 1.86296 * 109.47040 * 5.02592 * 20 19 18 23 23 C 1.38626 * 119.35222 * 359.74479 * 19 18 17 24 24 C 1.38588 * 118.48760 * 359.97438 * 23 19 18 25 25 C 1.52996 * 109.47247 * 59.99847 * 11 10 9 26 26 C 1.52998 * 109.46942 * 210.00236 * 7 6 5 27 27 H 1.08998 * 109.47609 * 300.00075 * 1 2 3 28 28 H 1.09002 * 109.46911 * 60.00057 * 1 2 3 29 29 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47001 * 239.99492 * 2 1 3 31 31 H 1.08992 * 109.47259 * 299.99722 * 3 2 1 32 32 H 1.08996 * 109.47101 * 60.00336 * 3 2 1 33 33 H 1.08998 * 109.46500 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47298 * 55.00094 * 4 2 1 35 35 H 1.09004 * 109.47552 * 294.99966 * 4 2 1 36 36 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 37 37 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 38 38 H 1.09006 * 109.47358 * 299.99958 * 9 7 6 39 39 H 1.09003 * 109.47460 * 59.99925 * 9 7 6 40 40 H 1.09003 * 109.47076 * 179.97438 * 10 9 7 41 41 H 1.08998 * 109.46844 * 60.00230 * 10 9 7 42 42 H 0.96998 * 120.00627 * 264.99872 * 13 11 10 43 43 H 1.08003 * 119.54881 * 180.27147 * 18 17 16 44 44 H 1.08999 * 109.46915 * 125.02257 * 20 19 18 45 45 H 0.96700 * 114.00109 * 59.99837 * 21 20 19 46 46 H 1.48498 * 110.00301 * 58.68073 * 22 20 19 47 47 H 1.48497 * 109.99943 * 180.02562 * 22 20 19 48 48 H 1.07995 * 120.75829 * 180.02562 * 23 19 18 49 49 H 1.07998 * 120.47274 * 180.02562 * 24 23 19 50 50 H 1.09001 * 109.46920 * 180.02562 * 25 11 10 51 51 H 1.09004 * 109.46732 * 60.00008 * 25 11 10 52 52 H 1.09003 * 109.46993 * 299.99734 * 26 7 6 53 53 H 1.08990 * 109.47540 * 60.00470 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 8 4.0411 -1.5042 2.3551 7 6 5.4610 -1.6595 2.3976 8 1 5.8490 -1.7339 1.3818 9 6 6.0857 -0.4493 3.0947 10 6 7.6059 -0.6157 3.1409 11 6 7.9564 -1.8877 3.9156 12 1 7.5681 -1.8129 4.9314 13 7 9.4120 -2.0474 3.9592 14 6 10.1301 -1.4229 4.9137 15 8 9.5702 -0.7278 5.7382 16 6 11.6023 -1.5848 4.9582 17 7 12.2075 -2.3505 4.0587 18 6 13.5121 -2.5168 4.0601 19 6 14.3069 -1.9025 5.0146 20 6 15.7999 -2.1072 5.0078 21 8 16.1906 -2.8037 6.1928 22 14 16.2828 -3.1071 3.5119 23 6 13.7151 -1.0982 5.9762 24 6 12.3390 -0.9364 5.9469 25 6 7.3317 -3.0979 3.2185 26 6 5.8119 -2.9315 3.1721 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 1.4424 0.0005 34 1 1.6053 -1.7198 1.2951 35 1 1.7515 -0.1583 2.1370 36 1 3.9994 0.1675 1.1421 37 1 3.8531 -1.3940 0.3003 38 1 5.8356 0.4570 2.5430 39 1 5.6977 -0.3748 4.1106 40 1 8.0510 0.2467 3.6371 41 1 7.9942 -0.6904 2.1251 42 1 9.8590 -2.6025 3.3013 43 1 13.9699 -3.1441 3.3095 44 1 16.2992 -1.1388 4.9742 45 1 15.7835 -3.6756 6.2888 46 1 15.8536 -2.4085 2.2738 47 1 17.7528 -3.3164 3.4939 48 1 14.3128 -0.6082 6.7304 49 1 11.8447 -0.3166 6.6803 50 1 7.5810 -4.0040 3.7708 51 1 7.7200 -3.1725 2.2028 52 1 5.4240 -2.8570 4.1880 53 1 5.3670 -3.7936 2.6755 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_13287726.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:45:18 Heat of formation + Delta-G solvation = -99.428026 kcal Electronic energy + Delta-G solvation = -30247.665984 eV Core-core repulsion = 26084.903451 eV Total energy + Delta-G solvation = -4162.762532 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.209 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.95302 -40.84298 -39.87575 -38.30148 -37.84936 -36.92923 -34.92313 -33.70970 -32.98628 -31.90819 -30.81622 -29.29319 -28.06423 -27.53596 -25.04872 -24.39113 -24.18237 -23.58449 -22.88222 -21.71232 -21.29172 -20.75705 -19.24360 -18.59957 -17.90223 -17.75731 -16.97958 -16.87222 -16.74998 -16.51330 -16.42651 -16.01868 -15.92217 -15.56302 -15.26890 -14.96051 -14.91398 -14.85371 -14.41792 -14.38207 -14.32612 -14.13508 -13.69028 -13.58945 -13.56760 -13.27043 -13.09946 -12.94824 -12.64802 -12.55083 -12.39877 -12.24439 -12.18827 -12.17422 -11.75190 -11.66049 -11.54876 -11.46048 -11.41476 -11.38994 -11.07367 -10.69921 -10.57461 -10.44867 -10.32594 -10.08615 -5.00508 -0.61740 0.06261 1.24879 1.51811 1.64650 1.89811 1.98285 2.62244 2.64806 2.93306 3.42634 3.51442 3.56470 3.64615 3.66404 3.77442 3.88468 3.91089 3.93182 3.99718 4.03502 4.08735 4.11763 4.17372 4.24649 4.28518 4.37513 4.40205 4.42187 4.45645 4.52864 4.56709 4.60188 4.71322 4.76798 4.79910 4.85644 4.90525 4.94094 4.97351 4.98810 5.00162 5.06586 5.08704 5.09174 5.11611 5.23636 5.26222 5.29999 5.35941 5.40963 5.42271 5.46418 6.26170 6.31920 6.59970 6.71397 7.03207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.111 4.111 5 C 0.058 3.942 6 O -0.401 6.401 7 C 0.089 3.911 8 H 0.074 0.926 9 C -0.133 4.133 10 C -0.120 4.120 11 C 0.142 3.858 12 H 0.071 0.929 13 N -0.694 5.694 14 C 0.569 3.431 15 O -0.567 6.567 16 C 0.064 3.936 17 N -0.457 5.457 18 C 0.103 3.897 19 C -0.143 4.143 20 C -0.070 4.070 21 O -0.551 6.551 22 Si 0.775 3.225 23 C -0.054 4.054 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.110 4.110 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.421 0.579 43 H 0.190 0.810 44 H 0.118 0.882 45 H 0.398 0.602 46 H -0.279 1.279 47 H -0.296 1.296 48 H 0.159 0.841 49 H 0.147 0.853 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.064 0.936 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -4.162 -4.360 6.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.149 4.149 5 C -0.018 4.018 6 O -0.321 6.321 7 C 0.032 3.968 8 H 0.092 0.908 9 C -0.172 4.172 10 C -0.158 4.158 11 C 0.038 3.962 12 H 0.089 0.911 13 N -0.345 5.345 14 C 0.354 3.646 15 O -0.446 6.446 16 C -0.073 4.073 17 N -0.168 5.168 18 C -0.056 4.056 19 C -0.145 4.145 20 C -0.181 4.181 21 O -0.359 6.359 22 Si 0.680 3.320 23 C -0.080 4.080 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.259 0.741 43 H 0.207 0.793 44 H 0.136 0.864 45 H 0.248 0.752 46 H -0.206 1.206 47 H -0.224 1.224 48 H 0.177 0.823 49 H 0.165 0.835 50 H 0.105 0.895 51 H 0.109 0.891 52 H 0.082 0.918 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.566 -3.645 -4.906 6.309 hybrid contribution 0.721 1.281 0.746 1.649 sum 2.288 -2.364 -4.160 5.303 Atomic orbital electron populations 1.21837 0.94637 1.02041 1.02052 1.21039 0.96207 0.96326 0.97490 1.21932 1.01170 0.95811 1.02034 1.21559 0.93492 1.01243 0.98586 1.22710 0.95263 0.96355 0.87439 1.87892 1.22074 1.78720 1.43446 1.22207 0.80421 0.94749 0.99461 0.90777 1.21928 0.94666 0.98938 1.01622 1.21792 0.95518 0.97386 1.01129 1.21110 0.78764 0.95979 1.00338 0.91056 1.45842 1.07718 1.49452 1.31458 1.18119 0.85974 0.79389 0.81102 1.90794 1.71828 1.40816 1.41141 1.21079 0.93894 0.97644 0.94722 1.67505 1.12460 1.14298 1.22562 1.23034 0.88276 0.97138 0.97177 1.21780 0.98484 0.97877 0.96398 1.25183 0.90511 1.02845 0.99513 1.86514 1.71418 1.36013 1.41952 0.93796 0.79200 0.86228 0.72767 1.21731 0.93590 0.95077 0.97566 1.22271 0.94858 0.98479 0.98191 1.21700 0.94263 0.96821 1.02284 1.21487 0.95188 0.96971 1.01155 0.92847 0.92095 0.92443 0.90574 0.92184 0.92916 0.92378 0.91484 0.92018 0.92853 0.92543 0.91396 0.92219 0.93043 0.90179 0.74128 0.79344 0.86444 0.75217 1.20551 1.22384 0.82310 0.83542 0.89509 0.89126 0.91766 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 9.19 71.98 0.66 0.83 16 2 C -0.09 0.11 2.92 -10.79 -0.03 0.08 16 3 C -0.15 0.20 8.95 71.98 0.64 0.85 16 4 C -0.11 -0.08 5.05 30.59 0.15 0.07 16 5 C 0.06 0.05 5.50 71.98 0.40 0.44 16 6 O -0.40 -1.74 9.99 -148.98 -1.49 -3.22 16 7 C 0.09 0.02 2.61 30.59 0.08 0.10 16 8 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 9 C -0.13 -0.22 5.54 30.59 0.17 -0.05 16 10 C -0.12 -0.16 5.49 30.59 0.17 0.01 16 11 C 0.14 0.14 2.45 44.99 0.11 0.25 16 12 H 0.07 0.41 7.58 -2.39 -0.02 0.40 16 13 N -0.69 -0.96 5.07 -445.09 -2.26 -3.21 16 14 C 0.57 3.97 7.78 86.88 0.68 4.65 16 15 O -0.57 -7.90 15.99 -3.76 -0.06 -7.96 16 16 C 0.06 0.26 6.75 41.91 0.28 0.54 16 17 N -0.46 -0.34 9.54 -184.90 -1.76 -2.11 16 18 C 0.10 -0.35 9.84 84.82 0.83 0.48 16 19 C -0.14 0.49 5.37 -19.69 -0.11 0.38 16 20 C -0.07 0.36 2.82 71.24 0.20 0.56 16 21 O -0.55 2.21 12.84 -148.98 -1.91 0.29 16 22 Si 0.78 -5.10 29.83 68.60 2.05 -3.05 16 23 C -0.05 0.07 9.83 22.45 0.22 0.29 16 24 C -0.12 -0.30 9.63 22.61 0.22 -0.08 16 25 C -0.11 0.45 5.39 30.58 0.16 0.62 16 26 C -0.11 0.16 5.57 30.58 0.17 0.33 16 27 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 -0.10 6.56 -2.39 -0.02 -0.12 16 34 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.05 0.00 6.29 -2.38 -0.02 -0.02 16 37 H 0.06 -0.07 8.09 -2.39 -0.02 -0.09 16 38 H 0.07 0.10 7.87 -2.38 -0.02 0.08 16 39 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.42 -1.09 7.93 -92.71 -0.74 -1.82 16 43 H 0.19 -1.79 4.92 -2.91 -0.01 -1.80 16 44 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 45 H 0.40 -4.73 8.70 -74.06 -0.64 -5.38 16 46 H -0.28 0.56 7.11 99.48 0.71 1.27 16 47 H -0.30 -0.46 7.11 99.48 0.71 0.25 16 48 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 49 H 0.15 0.45 7.64 -2.91 -0.02 0.43 16 50 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 51 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 52 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 53 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: 0.00 -17.51 419.67 -0.86 -18.37 By element: Atomic # 1 Polarization: -9.02 SS G_CDS: -0.44 Total: -9.46 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.01 Total: 10.36 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -4.02 Total: -5.32 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -3.46 Total: -10.90 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: 2.05 Total: -3.05 kcal Total: -17.51 -0.86 -18.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_13287726.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.054 kcal (2) G-P(sol) polarization free energy of solvation -17.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds