Wall clock time and date at job start Sat Mar 6 2021 17:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36421 * 125.80017 * 2 1 4 4 C 1.47386 * 127.18923 * 0.02562 * 3 2 1 5 5 O 1.21614 * 119.99720 * 359.71335 * 4 3 2 6 6 N 1.34779 * 119.99765 * 179.70677 * 4 3 2 7 7 C 1.46500 * 119.99793 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47092 * 325.00176 * 7 6 4 9 9 C 1.53005 * 109.47094 * 84.99912 * 7 6 4 10 10 C 1.52999 * 109.47159 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47317 * 300.00546 * 10 9 7 12 12 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 13 13 O 1.42896 * 109.46906 * 179.97438 * 11 10 9 14 14 C 1.42896 * 114.00446 * 89.99887 * 13 11 10 15 15 C 1.52998 * 109.47357 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46966 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46966 * 175.00294 * 16 15 14 18 18 C 1.53008 * 109.47190 * 294.99967 * 16 15 14 19 19 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 20 20 C 1.52997 * 109.47007 * 205.00228 * 7 6 4 21 21 C 1.47015 * 105.61896 * 179.75515 * 3 2 1 22 22 C 1.34178 * 105.95212 * 0.22419 * 21 3 2 23 23 C 1.50702 * 125.43989 * 179.97438 * 22 21 3 24 24 O 1.42903 * 109.47008 * 300.00427 * 23 22 21 25 25 Si 1.86295 * 109.47612 * 180.02562 * 23 22 21 26 26 O 1.33651 * 125.80618 * 180.14179 * 2 1 3 27 27 H 1.08997 * 109.47241 * 90.00092 * 1 2 3 28 28 H 1.09004 * 109.46598 * 209.99517 * 1 2 3 29 29 H 1.08994 * 109.47515 * 329.99745 * 1 2 3 30 30 H 0.97004 * 119.99983 * 0.02562 * 6 4 3 31 31 H 1.09000 * 109.47360 * 300.00194 * 9 7 6 32 32 H 1.09002 * 109.46935 * 60.00169 * 9 7 6 33 33 H 1.08996 * 109.46929 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46716 * 60.00455 * 10 9 7 35 35 H 1.08999 * 109.47115 * 300.00419 * 14 13 11 36 36 H 1.09000 * 109.46923 * 59.99773 * 14 13 11 37 37 H 1.08997 * 109.47390 * 299.99916 * 15 14 13 38 38 H 1.09000 * 109.47045 * 60.00147 * 15 14 13 39 39 H 1.08998 * 109.47219 * 54.99915 * 16 15 14 40 40 H 1.09002 * 109.47319 * 60.00255 * 17 16 15 41 41 H 1.09001 * 109.46838 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.46921 * 299.99391 * 17 16 15 43 43 H 1.08998 * 109.46998 * 300.00084 * 18 16 15 44 44 H 1.09003 * 109.46677 * 60.00445 * 18 16 15 45 45 H 1.09001 * 109.47171 * 179.97438 * 18 16 15 46 46 H 1.08992 * 109.47399 * 59.99823 * 19 11 10 47 47 H 1.09004 * 109.46724 * 180.02562 * 19 11 10 48 48 H 1.08993 * 109.47194 * 59.99623 * 20 7 6 49 49 H 1.09002 * 109.46695 * 299.99637 * 20 7 6 50 50 H 1.08001 * 127.02421 * 180.24549 * 21 3 2 51 51 H 1.09004 * 109.47100 * 60.00143 * 23 22 21 52 52 H 0.96701 * 114.00325 * 299.99625 * 24 23 22 53 53 H 1.48496 * 110.00107 * 180.02562 * 25 23 22 54 54 H 1.48507 * 109.99664 * 301.32337 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8738 2.5158 0.0005 5 8 0.6888 2.7891 -0.0042 6 7 2.7928 3.5017 0.0064 7 6 2.3643 4.9026 0.0075 8 1 1.4554 5.0050 -0.5855 9 6 2.0888 5.3505 1.4444 10 6 1.6418 6.8138 1.4456 11 6 2.7456 7.6848 0.8425 12 1 3.6544 7.5820 1.4356 13 8 2.3278 9.0513 0.8431 14 6 2.6801 9.7663 2.0291 15 6 2.1864 11.2103 1.9197 16 6 2.5641 11.9760 3.1894 17 6 2.1819 13.4488 3.0294 18 6 1.8163 11.3820 4.3848 19 6 3.0210 7.2368 -0.5943 20 6 3.4677 5.7739 -0.5957 21 6 3.6849 0.5993 0.0061 22 6 3.5859 -0.7388 0.0040 23 6 4.7459 -1.7008 0.0079 24 8 5.5478 -1.4849 -1.1551 25 14 4.1029 -3.4493 0.0022 26 8 2.2889 -1.0839 -0.0027 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 3.7380 3.2836 0.0099 31 1 1.3026 4.7297 1.8741 32 1 2.9976 5.2481 2.0374 33 1 1.4451 7.1327 2.4691 34 1 0.7331 6.9165 0.8524 35 1 2.2176 9.2882 2.8925 36 1 3.7636 9.7612 2.1481 37 1 2.6493 11.6882 1.0564 38 1 1.1029 11.2158 1.8005 39 1 3.6383 11.8954 3.3563 40 1 1.1078 13.5294 2.8626 41 1 2.4515 13.9944 3.9338 42 1 2.7147 13.8720 2.1779 43 1 0.7422 11.4626 4.2179 44 1 2.0887 10.3327 4.4987 45 1 2.0858 11.9271 5.2894 46 1 2.1124 7.3396 -1.1874 47 1 3.8078 7.8571 -1.0238 48 1 3.6640 5.4548 -1.6192 49 1 4.3765 5.6715 -0.0026 50 1 4.5927 1.1842 0.0114 51 1 5.3497 -1.5383 0.9008 52 1 5.0743 -1.6123 -1.9886 53 1 5.2372 -4.4076 0.0066 54 1 3.2412 -3.6773 1.1900 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_13308374.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:45:40 Heat of formation + Delta-G solvation = -124.209443 kcal Electronic energy + Delta-G solvation = -31333.045759 eV Core-core repulsion = 27044.178483 eV Total energy + Delta-G solvation = -4288.867276 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.213 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.77896 -41.08878 -39.91898 -38.27295 -37.99616 -36.91923 -34.88929 -34.03236 -33.08860 -31.91371 -30.84562 -29.62506 -28.85295 -28.06488 -25.88989 -24.53574 -24.26334 -23.63550 -23.03449 -21.85472 -21.45626 -20.88505 -20.40450 -18.91617 -17.92596 -17.82589 -17.70208 -17.33272 -16.84055 -16.76839 -16.40475 -16.04392 -15.78348 -15.66687 -15.53374 -15.03406 -14.87273 -14.80247 -14.73195 -14.33936 -14.27058 -14.09622 -13.96303 -13.83613 -13.69236 -13.58904 -13.27850 -13.10397 -12.92565 -12.87146 -12.77308 -12.65059 -12.39192 -12.25443 -12.24201 -12.18949 -11.75272 -11.64747 -11.53714 -11.45049 -11.40612 -11.11772 -10.94453 -10.62300 -10.42545 -10.12488 -9.58463 -5.00840 0.21767 0.82274 1.17624 1.39262 1.75605 1.90819 2.09184 2.23613 2.62920 3.21317 3.46784 3.55373 3.64679 3.72364 3.77189 3.88019 3.90591 3.99228 4.02801 4.09111 4.10502 4.16128 4.24322 4.27556 4.31097 4.37235 4.41192 4.43880 4.46613 4.52128 4.58404 4.59695 4.63901 4.70939 4.76284 4.77739 4.81852 4.89538 4.93194 4.98090 4.99535 5.05863 5.07984 5.08377 5.10656 5.12572 5.20410 5.24538 5.27292 5.29794 5.40261 5.45610 5.46551 5.88701 6.30824 6.47766 6.62083 7.15249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 C -0.269 4.269 4 C 0.589 3.411 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.147 3.853 8 H 0.069 0.931 9 C -0.119 4.119 10 C -0.133 4.133 11 C 0.089 3.911 12 H 0.073 0.927 13 O -0.402 6.402 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.092 4.092 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.147 4.147 22 C -0.061 4.061 23 C -0.022 4.022 24 O -0.539 6.539 25 Si 0.774 3.226 26 O -0.172 6.172 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.413 0.587 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.178 0.822 51 H 0.139 0.861 52 H 0.400 0.600 53 H -0.279 1.279 54 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -0.697 -0.767 3.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.273 4.273 4 C 0.378 3.622 5 O -0.455 6.455 6 N -0.359 5.359 7 C 0.043 3.957 8 H 0.087 0.913 9 C -0.158 4.158 10 C -0.172 4.172 11 C 0.032 3.968 12 H 0.091 0.909 13 O -0.322 6.322 14 C -0.018 4.018 15 C -0.149 4.149 16 C -0.111 4.111 17 C -0.206 4.206 18 C -0.209 4.209 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.166 4.166 22 C -0.109 4.109 23 C -0.133 4.133 24 O -0.347 6.347 25 Si 0.679 3.321 26 O -0.069 6.069 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.250 0.750 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.195 0.805 51 H 0.156 0.844 52 H 0.251 0.749 53 H -0.205 1.205 54 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 3.102 -1.343 -0.080 3.382 hybrid contribution 0.428 0.516 0.696 0.967 sum 3.530 -0.827 0.616 3.678 Atomic orbital electron populations 1.20698 0.82663 1.05332 1.05367 1.23218 0.94757 0.83038 0.95906 1.21224 0.94288 0.93449 1.18371 1.17384 0.85247 0.84441 0.75129 1.90761 1.17986 1.84535 1.52251 1.45743 1.10095 1.05408 1.74612 1.21005 0.98704 0.79522 0.96519 0.91255 1.21788 1.01867 0.95346 0.96755 1.21925 0.99325 0.94388 1.01519 1.22204 0.96271 0.80790 0.97540 0.90858 1.87890 1.80724 1.23162 1.40375 1.22705 0.99124 0.92657 0.87267 1.21558 1.01557 0.93320 0.98440 1.21042 1.00663 0.95238 0.94126 1.21837 1.01559 0.95105 1.02061 1.21936 1.00331 1.00935 0.97742 1.21488 1.02566 0.95555 0.95226 1.21699 0.97748 0.93025 1.02633 1.22786 0.96348 0.93639 1.03812 1.22928 0.82866 0.96056 1.09012 1.24431 0.89258 1.06876 0.92734 1.86532 1.38645 1.93329 1.16195 0.93275 0.78920 0.72547 0.87332 1.83673 1.16788 1.34964 1.71467 0.87978 0.88479 0.88719 0.75009 0.93063 0.90322 0.91483 0.92262 0.92841 0.92601 0.91501 0.91986 0.90602 0.92815 0.92092 0.92456 0.92883 0.92395 0.92182 0.91793 0.89901 0.89608 0.89227 0.80472 0.84366 0.74928 1.20530 1.22319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 9.89 71.24 0.70 0.65 16 2 C 0.08 0.31 7.37 25.26 0.19 0.50 16 3 C -0.27 -1.08 6.31 -18.99 -0.12 -1.20 16 4 C 0.59 3.70 7.78 86.65 0.67 4.37 16 5 O -0.57 -7.38 14.51 -4.07 -0.06 -7.44 16 6 N -0.71 -0.09 5.07 -445.82 -2.26 -2.35 16 7 C 0.15 0.07 2.46 44.99 0.11 0.18 16 8 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 9 C -0.12 -0.12 5.50 30.60 0.17 0.05 16 10 C -0.13 -0.21 5.54 30.59 0.17 -0.04 16 11 C 0.09 0.02 2.61 30.59 0.08 0.10 16 12 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 13 O -0.40 -1.76 9.99 -148.98 -1.49 -3.24 16 14 C 0.06 0.05 5.50 71.98 0.40 0.44 16 15 C -0.11 -0.08 5.05 30.59 0.15 0.07 16 16 C -0.09 0.11 2.92 -10.79 -0.03 0.08 16 17 C -0.15 0.17 9.19 71.98 0.66 0.83 16 18 C -0.15 0.20 8.95 71.98 0.64 0.85 16 19 C -0.11 0.16 5.57 30.58 0.17 0.33 16 20 C -0.11 0.49 5.39 30.58 0.16 0.66 16 21 C -0.15 0.04 10.46 23.65 0.25 0.29 16 22 C -0.06 0.01 6.20 24.76 0.15 0.17 16 23 C -0.02 0.07 2.98 71.24 0.21 0.29 16 24 O -0.54 2.13 12.86 -148.98 -1.92 0.21 16 25 Si 0.77 -2.14 32.08 68.60 2.20 0.06 16 26 O -0.17 -0.37 8.89 4.47 0.04 -0.33 16 27 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.10 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.09 0.41 6.49 -2.39 -0.02 0.39 16 30 H 0.41 -2.19 7.77 -92.71 -0.72 -2.91 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.07 0.10 7.87 -2.39 -0.02 0.08 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.00 6.30 -2.39 -0.02 -0.01 16 36 H 0.06 -0.06 8.09 -2.39 -0.02 -0.08 16 37 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 -0.10 6.57 -2.39 -0.02 -0.12 16 45 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.18 -0.92 7.74 -2.91 -0.02 -0.94 16 51 H 0.14 -0.62 7.96 -2.38 -0.02 -0.64 16 52 H 0.40 -4.51 8.70 -74.06 -0.64 -5.15 16 53 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 54 H -0.30 -1.33 7.11 99.48 0.71 -0.62 16 Total: 0.00 -16.92 428.54 0.82 -16.10 By element: Atomic # 1 Polarization: -11.17 SS G_CDS: -0.44 Total: -11.61 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.75 Total: 8.61 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.35 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -3.42 Total: -10.80 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: 2.20 Total: 0.06 kcal Total: -16.92 0.82 -16.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_13308374.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.111 kcal (2) G-P(sol) polarization free energy of solvation -16.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds