Wall clock time and date at job start Sat Mar 6 2021 17:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47106 * 2 1 4 4 C 1.53003 * 109.47207 * 119.99711 * 2 1 3 5 5 C 1.53003 * 109.47024 * 64.99969 * 4 2 1 6 6 O 1.42893 * 109.47152 * 180.02562 * 5 4 2 7 7 C 1.42902 * 113.99949 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47237 * 330.00160 * 7 6 5 9 9 C 1.53003 * 109.46943 * 90.00533 * 7 6 5 10 10 C 1.52997 * 109.46860 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47188 * 299.99296 * 10 9 7 12 12 H 1.08999 * 109.47091 * 300.00470 * 11 10 9 13 13 N 1.46499 * 109.47341 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 11 10 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 11 16 16 C 1.47541 * 119.99728 * 179.72391 * 14 13 11 17 17 C 1.40137 * 120.19238 * 179.97438 * 16 14 13 18 18 O 1.35658 * 120.14501 * 0.02562 * 17 16 14 19 19 C 1.38702 * 119.69908 * 180.02562 * 17 16 14 20 20 C 1.38051 * 120.08798 * 359.97438 * 19 17 16 21 21 C 1.50704 * 119.80787 * 180.02562 * 20 19 17 22 22 O 1.42895 * 109.47137 * 64.99515 * 21 20 19 23 23 Si 1.86296 * 109.47171 * 185.00016 * 21 20 19 24 24 C 1.38545 * 120.38934 * 0.02562 * 20 19 17 25 25 C 1.37796 * 120.29863 * 359.68001 * 24 20 19 26 26 C 1.53001 * 109.46944 * 60.00112 * 11 10 9 27 27 C 1.53003 * 109.46751 * 209.99816 * 7 6 5 28 28 H 1.08999 * 109.47001 * 300.00458 * 1 2 3 29 29 H 1.08998 * 109.46871 * 60.00382 * 1 2 3 30 30 H 1.08999 * 109.46861 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47491 * 239.99703 * 2 1 3 32 32 H 1.08997 * 109.47245 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46944 * 299.99574 * 3 2 1 34 34 H 1.09002 * 109.47188 * 59.99518 * 3 2 1 35 35 H 1.08998 * 109.46740 * 305.00606 * 4 2 1 36 36 H 1.08992 * 109.47154 * 185.00289 * 4 2 1 37 37 H 1.08998 * 109.46720 * 59.99742 * 5 4 2 38 38 H 1.09005 * 109.47051 * 300.00668 * 5 4 2 39 39 H 1.09002 * 109.46570 * 299.99234 * 9 7 6 40 40 H 1.08993 * 109.47787 * 59.99444 * 9 7 6 41 41 H 1.09001 * 109.47132 * 179.97438 * 10 9 7 42 42 H 1.08999 * 109.47488 * 59.99523 * 10 9 7 43 43 H 0.97001 * 119.99790 * 264.99588 * 13 11 10 44 44 H 0.96696 * 114.00074 * 90.00520 * 18 17 16 45 45 H 1.08004 * 119.95816 * 179.97438 * 19 17 16 46 46 H 1.09003 * 109.46468 * 304.99722 * 21 20 19 47 47 H 0.96704 * 113.99966 * 60.00451 * 22 21 20 48 48 H 1.48505 * 109.99824 * 58.67984 * 23 21 20 49 49 H 1.48498 * 110.00029 * 179.97438 * 23 21 20 50 50 H 1.07998 * 119.85356 * 179.97438 * 24 20 19 51 51 H 1.07999 * 120.04571 * 180.32476 * 25 24 20 52 52 H 1.08999 * 109.46935 * 60.00262 * 26 11 10 53 53 H 1.09004 * 109.47138 * 180.02562 * 26 11 10 54 54 H 1.09000 * 109.47291 * 60.00910 * 27 7 6 55 55 H 1.08999 * 109.47531 * 300.00164 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 8 2.1111 -2.8689 2.3551 7 6 1.7851 -4.2596 2.3971 8 1 0.8482 -4.4294 1.8666 9 6 2.9020 -5.0655 1.7308 10 6 2.5526 -6.5544 1.7753 11 6 2.4016 -6.9996 3.2312 12 1 3.3384 -6.8301 3.7621 13 7 2.0677 -8.4254 3.2739 14 6 3.0487 -9.3487 3.2343 15 8 4.2105 -8.9984 3.1580 16 6 2.7128 -10.7845 3.2833 17 6 3.7296 -11.7480 3.2419 18 8 5.0282 -11.3648 3.1569 19 6 3.4022 -13.0950 3.2881 20 6 2.0803 -13.4833 3.3751 21 6 1.7318 -14.9487 3.4256 22 8 2.2476 -15.5198 4.6296 23 14 -0.1201 -15.1482 3.3871 24 6 1.0722 -12.5339 3.4164 25 6 1.3797 -11.1913 3.3775 26 6 1.2848 -6.1936 3.8977 27 6 1.6345 -4.7042 3.8534 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2617 2.1369 36 1 3.1263 -0.6442 1.2952 37 1 2.0699 -2.6549 0.3003 38 1 0.5489 -2.2723 1.1421 39 1 3.0092 -4.7488 0.6934 40 1 3.8388 -4.8957 2.2613 41 1 3.3481 -7.1286 1.3002 42 1 1.6159 -6.7239 1.2445 43 1 1.1408 -8.7048 3.3348 44 1 5.4572 -11.2363 4.0139 45 1 4.1825 -13.8411 3.2560 46 1 2.1698 -15.4560 2.5660 47 1 1.9003 -15.1160 5.4367 48 1 -0.6720 -14.5300 2.1548 49 1 -0.4768 -16.5889 3.4357 50 1 0.0409 -12.8474 3.4840 51 1 0.5908 -10.4546 3.4152 52 1 0.3480 -6.3631 3.3669 53 1 1.1774 -6.5104 4.9351 54 1 0.8388 -4.1301 4.3281 55 1 2.5713 -4.5344 4.3839 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_13422076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:45:49 Heat of formation + Delta-G solvation = -152.007327 kcal Electronic energy + Delta-G solvation = -32660.893489 eV Core-core repulsion = 28242.594666 eV Total energy + Delta-G solvation = -4418.298823 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.74844 -40.62404 -39.71623 -38.55417 -38.10601 -37.14337 -36.87422 -34.81932 -32.81437 -31.88861 -31.10964 -30.72489 -29.14729 -28.05373 -27.27780 -24.34200 -24.06702 -23.88565 -23.51391 -22.71788 -21.53436 -21.20618 -20.76931 -19.45115 -18.68419 -18.19150 -17.79298 -17.51363 -16.94943 -16.71408 -16.52326 -16.36955 -16.09577 -15.94874 -15.73304 -15.59956 -15.28380 -14.98675 -14.87741 -14.79390 -14.50257 -14.42622 -14.20472 -14.02765 -13.83525 -13.32212 -13.25402 -13.22292 -13.05648 -12.93715 -12.83513 -12.82465 -12.41158 -12.30721 -12.19275 -12.18682 -12.10428 -11.77689 -11.71149 -11.64079 -11.54868 -11.39265 -11.37916 -10.92542 -10.48724 -10.42645 -10.21306 -10.00692 -9.77879 -4.98654 -0.41646 0.14519 1.28656 1.65289 1.72814 2.00397 2.01463 2.57728 2.63895 3.11506 3.44089 3.53451 3.59872 3.66569 3.69894 3.79435 3.89171 3.90715 3.99382 4.04534 4.08118 4.11976 4.16721 4.25795 4.27539 4.29243 4.36801 4.40190 4.42854 4.45471 4.52432 4.60383 4.61229 4.71890 4.76384 4.77390 4.82262 4.91212 4.93532 4.98722 5.01269 5.03060 5.06418 5.08790 5.09624 5.12806 5.14902 5.24268 5.26613 5.28285 5.30242 5.41432 5.46349 5.46702 5.60056 6.32135 6.49199 6.69858 6.75149 7.18271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.111 4.111 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.090 3.910 8 H 0.076 0.924 9 C -0.134 4.134 10 C -0.120 4.120 11 C 0.147 3.853 12 H 0.065 0.935 13 N -0.708 5.708 14 C 0.555 3.445 15 O -0.565 6.565 16 C -0.180 4.180 17 C 0.151 3.849 18 O -0.500 6.500 19 C -0.142 4.142 20 C -0.074 4.074 21 C -0.086 4.086 22 O -0.555 6.555 23 Si 0.793 3.207 24 C -0.129 4.129 25 C -0.051 4.051 26 C -0.112 4.112 27 C -0.111 4.111 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.416 0.584 44 H 0.407 0.593 45 H 0.131 0.869 46 H 0.106 0.894 47 H 0.397 0.603 48 H -0.278 1.278 49 H -0.304 1.304 50 H 0.167 0.833 51 H 0.172 0.828 52 H 0.095 0.905 53 H 0.090 0.910 54 H 0.084 0.916 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 0.960 2.952 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.017 4.017 6 O -0.322 6.322 7 C 0.032 3.968 8 H 0.094 0.906 9 C -0.173 4.173 10 C -0.158 4.158 11 C 0.042 3.958 12 H 0.083 0.917 13 N -0.360 5.360 14 C 0.343 3.657 15 O -0.445 6.445 16 C -0.184 4.184 17 C 0.105 3.895 18 O -0.313 6.313 19 C -0.161 4.161 20 C -0.075 4.075 21 C -0.195 4.195 22 O -0.363 6.363 23 Si 0.698 3.302 24 C -0.146 4.146 25 C -0.070 4.070 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.254 0.746 44 H 0.267 0.733 45 H 0.149 0.851 46 H 0.123 0.877 47 H 0.248 0.752 48 H -0.205 1.205 49 H -0.232 1.232 50 H 0.184 0.816 51 H 0.190 0.810 52 H 0.113 0.887 53 H 0.108 0.892 54 H 0.103 0.897 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.129 0.613 1.618 9.291 hybrid contribution 1.111 -0.288 -0.301 1.187 sum -8.018 0.325 1.316 8.132 Atomic orbital electron populations 1.21924 0.94615 1.02119 1.02156 1.21045 0.96395 0.96379 0.97345 1.21838 1.01021 0.95566 1.02161 1.21557 1.01297 0.93265 0.98771 1.22699 0.98525 0.92942 0.87537 1.87893 1.79314 1.22048 1.42986 1.22221 0.96918 0.80302 0.97341 0.90571 1.21935 0.99522 0.94643 1.01198 1.21790 1.02206 0.95021 0.96832 1.20983 0.99539 0.79293 0.95985 0.91701 1.45818 1.10077 1.05657 1.74484 1.18343 0.85219 0.86108 0.75987 1.90815 1.20913 1.82326 1.50412 1.20468 0.95466 0.92447 1.10007 1.18774 0.84170 0.91141 0.95463 1.84713 1.21193 1.89800 1.35604 1.21333 0.97669 0.94528 1.02561 1.20577 0.92992 0.96804 0.97085 1.25442 1.13389 0.90112 0.90554 1.86505 1.71974 1.62036 1.15768 0.93695 0.72061 0.78743 0.85743 1.21249 0.99704 0.92259 1.01412 1.21533 0.94041 0.97185 0.94206 1.21726 0.97876 0.92934 1.02413 1.21519 1.03005 0.95614 0.94789 0.92572 0.92275 0.92168 0.90998 0.92758 0.92098 0.92583 0.91507 0.92057 0.93375 0.92048 0.91712 0.92611 0.93699 0.89878 0.74552 0.73319 0.85091 0.87700 0.75225 1.20463 1.23192 0.81612 0.81032 0.88677 0.89189 0.89697 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 8.95 71.98 0.64 1.01 16 2 C -0.09 0.12 2.92 -10.79 -0.03 0.09 16 3 C -0.15 0.17 9.19 71.98 0.66 0.83 16 4 C -0.11 -0.07 5.05 30.60 0.15 0.09 16 5 C 0.06 0.03 5.50 71.98 0.40 0.43 16 6 O -0.40 -1.61 9.99 -148.98 -1.49 -3.10 16 7 C 0.09 -0.04 2.61 30.60 0.08 0.04 16 8 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 9 C -0.13 -0.23 5.54 30.59 0.17 -0.06 16 10 C -0.12 -0.09 5.50 30.59 0.17 0.08 16 11 C 0.15 -0.12 2.46 44.99 0.11 -0.01 16 12 H 0.06 0.34 7.57 -2.39 -0.02 0.33 16 13 N -0.71 1.76 5.03 -445.70 -2.24 -0.49 16 14 C 0.56 2.94 7.73 86.70 0.67 3.61 16 15 O -0.57 -8.28 14.82 16.94 0.25 -8.03 16 16 C -0.18 -0.34 5.89 -20.01 -0.12 -0.46 16 17 C 0.15 0.79 6.72 22.84 0.15 0.94 16 18 O -0.50 -4.33 11.58 -68.81 -0.80 -5.12 16 19 C -0.14 -0.33 9.60 22.34 0.21 -0.12 16 20 C -0.07 0.17 5.35 -19.83 -0.11 0.07 16 21 C -0.09 0.26 2.79 71.24 0.20 0.45 16 22 O -0.55 1.03 12.83 -148.98 -1.91 -0.88 16 23 Si 0.79 -4.83 29.78 68.60 2.04 -2.79 16 24 C -0.13 0.88 8.64 22.24 0.19 1.07 16 25 C -0.05 0.32 9.54 22.52 0.21 0.53 16 26 C -0.11 0.74 5.39 30.61 0.17 0.90 16 27 C -0.11 0.30 5.58 30.61 0.17 0.47 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.06 -0.20 6.57 -2.39 -0.02 -0.22 16 31 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.05 0.00 7.87 -2.39 -0.02 -0.02 16 38 H 0.06 -0.11 6.51 -2.38 -0.02 -0.13 16 39 H 0.06 0.13 7.87 -2.39 -0.02 0.11 16 40 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.42 -4.23 6.63 -92.71 -0.62 -4.85 16 44 H 0.41 0.66 9.06 -74.06 -0.67 -0.01 16 45 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 47 H 0.40 -4.23 8.70 -74.05 -0.64 -4.88 16 48 H -0.28 0.61 7.11 99.48 0.71 1.31 16 49 H -0.30 -0.77 7.11 99.48 0.71 -0.07 16 50 H 0.17 -2.17 4.88 -2.91 -0.01 -2.19 16 51 H 0.17 -2.48 6.40 -2.91 -0.02 -2.50 16 52 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 53 H 0.09 -0.74 8.14 -2.38 -0.02 -0.76 16 54 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 55 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -24.81 431.18 -1.02 -25.83 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: -0.99 Total: -15.38 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 4.11 Total: 9.96 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -2.24 Total: -0.49 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -3.94 Total: -17.14 kcal Atomic # 14 Polarization: -4.83 SS G_CDS: 2.04 Total: -2.79 kcal Total: -24.81 -1.02 -25.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_13422076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.176 kcal (2) G-P(sol) polarization free energy of solvation -24.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds