Wall clock time and date at job start Sat Mar 6 2021 17:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.53006 * 109.47370 * 119.99786 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46993 * 329.99508 * 7 6 5 9 9 C 1.53003 * 109.47347 * 89.99741 * 7 6 5 10 10 C 1.52993 * 109.47164 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47407 * 300.00083 * 10 9 7 12 12 H 1.08994 * 109.47480 * 300.00038 * 11 10 9 13 13 N 1.46501 * 109.47052 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99992 * 85.00337 * 13 11 10 15 15 O 1.21611 * 119.99732 * 359.97438 * 14 13 11 16 16 C 1.47382 * 120.00155 * 180.02562 * 14 13 11 17 17 C 1.36422 * 127.18766 * 359.68303 * 16 14 13 18 18 O 1.33656 * 108.38992 * 179.83580 * 17 16 14 19 19 C 1.34211 * 110.91294 * 0.45311 * 18 17 16 20 20 C 1.50694 * 125.44162 * 179.72703 * 19 18 17 21 21 O 1.42898 * 109.47376 * 119.99394 * 20 19 18 22 22 Si 1.86303 * 109.47065 * 359.97438 * 20 19 18 23 23 C 1.34186 * 109.12280 * 359.71613 * 19 18 17 24 24 C 1.53000 * 109.47051 * 60.00212 * 11 10 9 25 25 C 1.53001 * 109.46972 * 209.99670 * 7 6 5 26 26 H 1.09000 * 109.46998 * 300.00170 * 1 2 3 27 27 H 1.09002 * 109.47083 * 60.00155 * 1 2 3 28 28 H 1.08994 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47608 * 240.00265 * 2 1 3 30 30 H 1.08996 * 109.46933 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47028 * 299.99879 * 3 2 1 32 32 H 1.09000 * 109.47335 * 60.00037 * 3 2 1 33 33 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 34 34 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 37 37 H 1.08992 * 109.46809 * 300.00308 * 9 7 6 38 38 H 1.09001 * 109.46539 * 59.99795 * 9 7 6 39 39 H 1.08998 * 109.47284 * 179.97438 * 10 9 7 40 40 H 1.09005 * 109.47128 * 60.00145 * 10 9 7 41 41 H 0.96998 * 120.00339 * 265.00012 * 13 11 10 42 42 H 1.07995 * 125.80358 * 359.97438 * 17 16 14 43 43 H 1.08998 * 109.47090 * 239.99407 * 20 19 18 44 44 H 0.96702 * 114.00169 * 300.00003 * 21 20 19 45 45 H 1.48500 * 110.00113 * 180.02562 * 22 20 19 46 46 H 1.48503 * 109.99937 * 301.32215 * 22 20 19 47 47 H 1.08004 * 127.02277 * 180.02562 * 23 19 18 48 48 H 1.08997 * 109.47430 * 179.97438 * 24 11 10 49 49 H 1.08999 * 109.47561 * 59.99766 * 24 11 10 50 50 H 1.09001 * 109.47379 * 300.00490 * 25 7 6 51 51 H 1.09008 * 109.47077 * 59.99907 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5051 2.3545 7 6 5.4610 -1.6613 2.3965 8 1 5.8485 -1.7356 1.3804 9 6 6.0869 -0.4518 3.0939 10 6 7.6069 -0.6195 3.1394 11 6 7.9568 -1.8920 3.9134 12 1 7.5690 -1.8176 4.9293 13 7 9.4123 -2.0528 3.9564 14 6 10.1313 -1.4294 4.9108 15 8 9.5718 -0.7331 5.7360 16 6 11.5956 -1.5907 4.9537 17 6 12.3683 -2.3348 4.1109 18 8 13.6443 -2.2113 4.4890 19 6 13.7503 -1.4157 5.5647 20 6 15.0364 -1.0589 6.2644 21 8 15.2216 0.3575 6.2278 22 14 16.4630 -1.8946 5.4057 23 6 12.5282 -0.9884 5.9175 24 6 7.3310 -3.1015 3.2159 25 6 5.8114 -2.9339 3.1702 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1370 35 1 3.9995 0.1676 1.1420 36 1 3.8533 -1.3939 0.3003 37 1 5.8372 0.4547 2.5428 38 1 5.6993 -0.3777 4.1100 39 1 8.0528 0.2423 3.6358 40 1 7.9948 -0.6940 2.1234 41 1 9.8587 -2.6079 3.2980 42 1 12.0101 -2.9219 3.2782 43 1 14.9907 -1.3927 7.3010 44 1 15.2714 0.7248 5.3346 45 1 17.7372 -1.5513 6.0866 46 1 16.2662 -3.3665 5.4094 47 1 12.2803 -0.3352 6.7412 48 1 7.5806 -4.0081 3.7670 49 1 7.7188 -3.1760 2.2000 50 1 5.4237 -2.8598 4.1863 51 1 5.3655 -3.7956 2.6733 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_13456056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:46:13 Heat of formation + Delta-G solvation = -121.216997 kcal Electronic energy + Delta-G solvation = -29003.635568 eV Core-core repulsion = 24870.435673 eV Total energy + Delta-G solvation = -4133.199895 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.197 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.72430 -41.10766 -39.91296 -38.24827 -38.01655 -36.91102 -34.92305 -33.85872 -31.94457 -31.88739 -30.69343 -29.08561 -28.05869 -26.68045 -25.11768 -24.29003 -23.63056 -22.80125 -22.29662 -21.41131 -20.93497 -20.54086 -19.32742 -17.90990 -17.78294 -17.54300 -17.40072 -17.16997 -16.81510 -16.47516 -16.07246 -15.95853 -15.62921 -15.52506 -15.04905 -14.87012 -14.83199 -14.75221 -14.26517 -14.17263 -14.03966 -13.71404 -13.66190 -13.52796 -13.26983 -13.10004 -12.91620 -12.82738 -12.64874 -12.38958 -12.24241 -12.21488 -12.17335 -11.74545 -11.64451 -11.53286 -11.44565 -11.39557 -11.21132 -10.97516 -10.64756 -10.42360 -10.16178 -9.78150 -4.98015 0.26134 0.80519 1.18605 1.50963 1.81964 1.94026 2.00654 2.23702 2.63934 3.29309 3.47493 3.59270 3.59572 3.65897 3.87878 3.90977 3.96174 4.00069 4.04065 4.09675 4.17320 4.24211 4.27753 4.28740 4.35818 4.41453 4.42891 4.47195 4.50305 4.53174 4.62324 4.72199 4.76950 4.81956 4.88401 4.90708 4.94421 4.98993 5.00826 5.06632 5.09005 5.09197 5.11217 5.12341 5.24570 5.27110 5.30024 5.40986 5.43936 5.46514 5.82901 6.32571 6.47658 6.62058 7.14966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.112 4.112 5 C 0.059 3.941 6 O -0.404 6.404 7 C 0.090 3.910 8 H 0.078 0.922 9 C -0.135 4.135 10 C -0.119 4.119 11 C 0.145 3.855 12 H 0.061 0.939 13 N -0.704 5.704 14 C 0.586 3.414 15 O -0.588 6.588 16 C -0.271 4.271 17 C 0.069 3.931 18 O -0.163 6.163 19 C -0.052 4.052 20 C -0.039 4.039 21 O -0.546 6.546 22 Si 0.801 3.199 23 C -0.154 4.154 24 C -0.111 4.111 25 C -0.112 4.112 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.418 0.582 42 H 0.266 0.734 43 H 0.128 0.872 44 H 0.400 0.600 45 H -0.285 1.285 46 H -0.286 1.286 47 H 0.141 0.859 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -3.533 -9.459 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.017 4.017 6 O -0.324 6.324 7 C 0.033 3.967 8 H 0.096 0.904 9 C -0.174 4.174 10 C -0.157 4.157 11 C 0.041 3.959 12 H 0.079 0.921 13 N -0.356 5.356 14 C 0.375 3.625 15 O -0.469 6.469 16 C -0.275 4.275 17 C -0.001 4.001 18 O -0.058 6.058 19 C -0.100 4.100 20 C -0.148 4.148 21 O -0.354 6.354 22 Si 0.704 3.296 23 C -0.174 4.174 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.256 0.744 42 H 0.282 0.718 43 H 0.146 0.854 44 H 0.251 0.749 45 H -0.212 1.212 46 H -0.213 1.213 47 H 0.158 0.842 48 H 0.105 0.895 49 H 0.116 0.884 50 H 0.077 0.923 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.774 -3.863 -8.147 9.434 hybrid contribution -0.698 0.394 0.754 1.100 sum 2.077 -3.469 -7.393 8.427 Atomic orbital electron populations 1.21840 0.94700 1.02025 1.02035 1.21040 0.96158 0.96332 0.97486 1.21936 1.01215 0.95799 1.02008 1.21564 0.93609 1.01209 0.98567 1.22708 0.95182 0.96378 0.87457 1.87897 1.22221 1.78660 1.43580 1.22214 0.80363 0.94602 0.99568 0.90354 1.21940 0.95026 0.99056 1.01331 1.21786 0.95219 0.97351 1.01389 1.21005 0.79081 0.95963 0.99882 0.92077 1.45695 1.07619 1.50570 1.31735 1.17550 0.85807 0.78636 0.80492 1.90795 1.72948 1.41456 1.41708 1.21484 0.93692 1.09171 1.03196 1.25355 0.79186 0.97016 0.98589 1.83714 1.29162 1.54340 1.38634 1.22760 0.97956 0.98449 0.90863 1.24696 0.98430 0.87868 1.03763 1.86543 1.94762 1.18521 1.35573 0.93174 0.72810 0.76710 0.86879 1.22548 0.91192 1.02640 1.01027 1.21704 0.93993 0.96663 1.02561 1.21506 0.95602 0.97009 1.00918 0.92926 0.92060 0.92454 0.90460 0.92296 0.92155 0.93013 0.91516 0.92169 0.92834 0.92357 0.91432 0.92820 0.93505 0.89441 0.74412 0.71823 0.85436 0.74902 1.21223 1.21282 0.84153 0.89482 0.88354 0.92294 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 9.19 71.98 0.66 0.87 16 2 C -0.09 0.14 2.92 -10.79 -0.03 0.11 16 3 C -0.15 0.26 8.95 71.98 0.64 0.90 16 4 C -0.11 -0.05 5.05 30.60 0.15 0.10 16 5 C 0.06 0.01 5.50 71.98 0.40 0.41 16 6 O -0.40 -1.59 9.99 -148.98 -1.49 -3.07 16 7 C 0.09 -0.06 2.61 30.60 0.08 0.02 16 8 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 9 C -0.14 -0.17 5.54 30.59 0.17 0.00 16 10 C -0.12 0.00 5.49 30.59 0.17 0.17 16 11 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 12 H 0.06 0.38 7.58 -2.39 -0.02 0.37 16 13 N -0.70 1.90 5.07 -445.85 -2.26 -0.36 16 14 C 0.59 3.60 7.78 86.65 0.67 4.27 16 15 O -0.59 -10.03 16.65 -4.06 -0.07 -10.09 16 16 C -0.27 -0.65 6.31 -18.99 -0.12 -0.77 16 17 C 0.07 -0.44 11.61 67.40 0.78 0.34 16 18 O -0.16 0.50 8.89 4.47 0.04 0.54 16 19 C -0.05 -0.04 6.20 24.76 0.15 0.12 16 20 C -0.04 0.05 2.97 71.23 0.21 0.26 16 21 O -0.55 0.19 12.86 -148.98 -1.92 -1.72 16 22 Si 0.80 -3.01 32.09 68.60 2.20 -0.81 16 23 C -0.15 -0.87 10.88 23.65 0.26 -0.61 16 24 C -0.11 0.72 5.39 30.58 0.16 0.88 16 25 C -0.11 0.27 5.57 30.58 0.17 0.44 16 26 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.06 -0.09 8.14 -2.39 -0.02 -0.10 16 29 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.06 -0.14 6.57 -2.39 -0.02 -0.15 16 31 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 32 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.05 -0.03 6.30 -2.39 -0.02 -0.05 16 36 H 0.06 -0.13 8.08 -2.39 -0.02 -0.15 16 37 H 0.07 0.07 7.87 -2.39 -0.02 0.06 16 38 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.42 -4.83 7.57 -92.71 -0.70 -5.53 16 42 H 0.27 -4.85 7.47 -2.91 -0.02 -4.87 16 43 H 0.13 -0.10 7.96 -2.39 -0.02 -0.11 16 44 H 0.40 -3.52 8.70 -74.06 -0.64 -4.16 16 45 H -0.29 -0.72 7.11 99.48 0.71 -0.01 16 46 H -0.29 -0.52 7.11 99.48 0.71 0.18 16 47 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 48 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 50 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 51 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: 0.00 -24.73 410.26 0.76 -23.96 By element: Atomic # 1 Polarization: -15.56 SS G_CDS: -0.39 Total: -15.95 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.65 Total: 7.52 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -2.26 Total: -0.36 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -3.43 Total: -14.36 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.20 Total: -0.81 kcal Total: -24.73 0.76 -23.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_13456056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.253 kcal (2) G-P(sol) polarization free energy of solvation -24.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds