Wall clock time and date at job start Sat Mar 6 2021 17:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33821 * 122.44979 * 2 1 4 4 C 1.50703 * 124.51846 * 0.02924 * 3 2 1 5 5 O 1.42902 * 109.46465 * 235.10722 * 4 3 2 6 6 Si 1.86296 * 109.47091 * 115.11046 * 4 3 2 7 7 S 1.70610 * 110.95590 * 180.02562 * 3 2 1 8 8 C 1.75829 * 91.56494 * 0.02562 * 7 3 2 9 9 C 1.46587 * 125.46041 * 179.97438 * 8 7 3 10 10 O 1.21701 * 119.99713 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99776 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99886 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46727 * 35.00736 * 12 11 9 14 14 C 1.52997 * 109.46804 * 155.00114 * 12 11 9 15 15 C 1.52999 * 109.46996 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46997 * 300.00194 * 15 14 12 17 17 H 1.08997 * 109.47691 * 299.99726 * 16 15 14 18 18 O 1.42907 * 109.47291 * 179.97438 * 16 15 14 19 19 C 1.42899 * 113.99982 * 149.99560 * 18 16 15 20 20 C 1.53005 * 109.47005 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.46943 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47160 * 65.00310 * 21 20 19 23 23 C 1.53000 * 109.47218 * 185.00443 * 21 20 19 24 24 C 1.52997 * 109.47406 * 60.00057 * 16 15 14 25 25 C 1.52999 * 109.46996 * 299.99943 * 24 16 15 26 26 C 1.36652 * 109.08200 * 359.97438 * 8 7 3 27 27 H 1.09000 * 109.46883 * 275.43817 * 1 2 3 28 28 H 1.09002 * 109.47146 * 35.44114 * 1 2 3 29 29 H 1.08997 * 109.47046 * 155.43714 * 1 2 3 30 30 H 1.08992 * 109.47649 * 355.10424 * 4 3 2 31 31 H 0.96702 * 113.99934 * 179.97438 * 5 4 3 32 32 H 1.48498 * 110.00479 * 59.99668 * 6 4 3 33 33 H 1.48509 * 109.99594 * 181.31473 * 6 4 3 34 34 H 0.96996 * 120.00011 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.47423 * 300.00184 * 14 12 11 36 36 H 1.09004 * 109.46971 * 60.00771 * 14 12 11 37 37 H 1.08995 * 109.47497 * 60.00142 * 15 14 12 38 38 H 1.08995 * 109.47381 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47745 * 300.00942 * 19 18 16 40 40 H 1.09004 * 109.46652 * 60.00851 * 19 18 16 41 41 H 1.09002 * 109.47105 * 300.00389 * 20 19 18 42 42 H 1.08998 * 109.46589 * 60.00457 * 20 19 18 43 43 H 1.09007 * 109.47482 * 305.00361 * 21 20 19 44 44 H 1.08997 * 109.47410 * 59.99638 * 22 21 20 45 45 H 1.09009 * 109.47145 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.47494 * 299.99808 * 22 21 20 47 47 H 1.08993 * 109.47273 * 59.99490 * 23 21 20 48 48 H 1.08996 * 109.47524 * 180.02562 * 23 21 20 49 49 H 1.09006 * 109.46795 * 299.99768 * 23 21 20 50 50 H 1.09004 * 109.46971 * 59.99603 * 24 16 15 51 51 H 1.08999 * 109.47506 * 179.97438 * 24 16 15 52 52 H 1.08995 * 109.47497 * 299.99858 * 25 24 16 53 53 H 1.08995 * 109.47381 * 179.97438 * 25 24 16 54 54 H 1.08002 * 123.34970 * 179.73093 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 2.1580 3.2562 -1.1045 6 14 2.0791 3.3788 1.5911 7 16 3.8969 0.7893 -0.0007 8 6 3.5938 -0.9427 -0.0018 9 6 4.6232 -1.9862 -0.0033 10 8 4.3002 -3.1596 -0.0045 11 7 5.9274 -1.6462 -0.0035 12 6 6.9562 -2.6891 -0.0045 13 1 6.6119 -3.5385 -0.5945 14 6 8.2448 -2.1335 -0.6141 15 6 9.3192 -3.2229 -0.6157 16 6 9.5884 -3.6758 0.8207 17 1 9.9329 -2.8267 1.4109 18 8 10.5915 -4.6937 0.8192 19 6 11.3931 -4.7215 2.0019 20 6 12.4276 -5.8433 1.8905 21 6 13.2855 -5.8734 3.1570 22 6 12.4115 -6.2465 4.3561 23 6 14.3983 -6.9107 2.9946 24 6 8.2998 -4.2313 1.4303 25 6 7.2254 -3.1420 1.4319 26 6 2.2446 -1.1600 -0.0010 27 1 -0.3633 0.0974 1.0231 28 1 -0.3633 0.8373 -0.5959 29 1 -0.3633 -0.9346 -0.4272 30 1 0.5510 2.4501 -0.0866 31 1 1.8207 4.1604 -1.1671 32 1 3.5552 3.4754 1.7220 33 1 1.4769 4.7361 1.6178 34 1 6.1847 -0.7110 -0.0022 35 1 8.0532 -1.8113 -1.6375 36 1 8.5891 -1.2841 -0.0241 37 1 8.9748 -4.0721 -1.2059 38 1 10.2374 -2.8270 -1.0496 39 1 11.9047 -3.7659 2.1167 40 1 10.7560 -4.8990 2.8684 41 1 11.9163 -6.7990 1.7755 42 1 13.0645 -5.6653 1.0240 43 1 13.7265 -4.8901 3.3207 44 1 11.9705 -7.2297 4.1925 45 1 13.0226 -6.2675 5.2586 46 1 11.6187 -5.5075 4.4719 47 1 15.0209 -6.6450 2.1403 48 1 15.0092 -6.9326 3.8970 49 1 13.9573 -7.8941 2.8309 50 1 7.9553 -5.0805 0.8401 51 1 8.4917 -4.5544 2.4535 52 1 7.5698 -2.2928 2.0221 53 1 6.3073 -3.5378 1.8658 54 1 1.8020 -2.1451 -0.0056 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_6739946.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:48:26 Heat of formation + Delta-G solvation = -109.853925 kcal Electronic energy + Delta-G solvation = -30728.049245 eV Core-core repulsion = 26563.875151 eV Total energy + Delta-G solvation = -4164.174095 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.185 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.33768 -40.19890 -39.57769 -38.29144 -37.66426 -36.91752 -34.86764 -32.61719 -31.93125 -30.81354 -29.87748 -29.24533 -28.06188 -26.54642 -24.47203 -24.27867 -23.66585 -22.93291 -21.77988 -21.28056 -20.76257 -19.95991 -19.17453 -18.55588 -17.85331 -17.64314 -17.11638 -16.84144 -16.58774 -16.29370 -15.93676 -15.83677 -15.54902 -15.23020 -14.95137 -14.90190 -14.86444 -14.58192 -14.41006 -14.21367 -13.99314 -13.72163 -13.61201 -13.37584 -13.29782 -13.16823 -13.10353 -12.97566 -12.93690 -12.66522 -12.63073 -12.40271 -12.26426 -12.21031 -12.18573 -11.89544 -11.75884 -11.65594 -11.54016 -11.46218 -11.42114 -11.26246 -10.84845 -10.46436 -10.23859 -9.65287 -9.41801 -4.99199 -0.68653 0.31773 0.78798 1.07033 1.29007 1.53108 1.88630 1.91036 2.03819 2.61735 3.14840 3.50722 3.62047 3.65954 3.73787 3.87617 3.90105 3.98630 4.00152 4.07284 4.10591 4.15285 4.21588 4.24777 4.27731 4.35059 4.39289 4.39907 4.44317 4.52016 4.52442 4.56971 4.69720 4.76190 4.77753 4.81280 4.88769 4.91477 4.92537 4.97745 4.98233 5.04080 5.05467 5.06250 5.08672 5.08861 5.19612 5.23399 5.29394 5.31554 5.37102 5.40735 5.44293 5.46067 6.28078 6.30707 6.50333 6.96842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.051 4.051 5 O -0.555 6.555 6 Si 0.740 3.260 7 S 0.224 5.776 8 C -0.288 4.288 9 C 0.592 3.408 10 O -0.567 6.567 11 N -0.713 5.713 12 C 0.144 3.856 13 H 0.071 0.929 14 C -0.115 4.115 15 C -0.110 4.110 16 C 0.089 3.911 17 H 0.075 0.925 18 O -0.401 6.401 19 C 0.058 3.942 20 C -0.111 4.111 21 C -0.092 4.092 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.052 4.052 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.401 0.599 32 H -0.282 1.282 33 H -0.263 1.263 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.081 0.919 53 H 0.053 0.947 54 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 5.927 3.300 6.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 C -0.314 4.314 4 C -0.161 4.161 5 O -0.366 6.366 6 Si 0.641 3.359 7 S 0.494 5.506 8 C -0.408 4.408 9 C 0.379 3.621 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.040 3.960 13 H 0.089 0.911 14 C -0.153 4.153 15 C -0.148 4.148 16 C 0.032 3.968 17 H 0.093 0.907 18 O -0.321 6.321 19 C -0.018 4.018 20 C -0.149 4.149 21 C -0.111 4.111 22 C -0.209 4.209 23 C -0.206 4.206 24 C -0.171 4.171 25 C -0.158 4.158 26 C -0.086 4.086 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.253 0.747 32 H -0.208 1.208 33 H -0.188 1.188 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.100 0.900 53 H 0.072 0.928 54 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.933 6.024 3.399 6.980 hybrid contribution -1.337 0.047 -0.870 1.596 sum -0.404 6.071 2.529 6.589 Atomic orbital electron populations 1.20704 0.87133 1.03804 1.04246 1.18812 0.99404 0.89885 1.03574 1.23545 0.98422 0.99039 1.10425 1.24403 1.01649 0.90041 0.99975 1.86556 1.72041 1.30852 1.47145 0.93858 0.80116 0.80690 0.81210 1.82892 1.04149 0.96006 1.67558 1.24553 0.98119 0.97858 1.20267 1.17163 0.82454 0.87086 0.75407 1.90824 1.82300 1.19824 1.51896 1.45869 1.04715 1.10914 1.74817 1.21090 0.87438 0.90400 0.97026 0.91084 1.21734 0.92237 0.98784 1.02576 1.21486 0.99322 0.98557 0.95406 1.22202 0.87185 0.90026 0.97407 0.90700 1.87894 1.47877 1.55682 1.40671 1.22714 0.92654 0.99056 0.87352 1.21559 0.96639 0.98232 0.98455 1.21042 0.95774 1.00123 0.94137 1.21934 0.99775 1.01535 0.97691 1.21836 0.97981 0.98700 1.02047 1.21925 0.95067 0.98451 1.01681 1.21796 0.98509 0.99162 0.96368 1.20810 0.91011 1.00456 0.96323 0.88576 0.90314 0.90833 0.86864 0.74727 1.20800 1.18798 0.75493 0.89712 0.89082 0.91774 0.89792 0.92571 0.92746 0.92002 0.91546 0.90589 0.92895 0.92165 0.92346 0.92484 0.92071 0.92836 0.92273 0.91181 0.89993 0.92842 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.48 9.58 71.24 0.68 1.16 16 2 C -0.10 -0.09 5.78 -21.05 -0.12 -0.21 16 3 C -0.19 -0.20 4.62 24.68 0.11 -0.09 16 4 C -0.05 0.16 2.80 71.24 0.20 0.36 16 5 O -0.55 0.54 12.83 -148.98 -1.91 -1.37 16 6 Si 0.74 -3.00 32.59 68.60 2.24 -0.76 16 7 S 0.22 0.45 21.35 -56.49 -1.21 -0.75 16 8 C -0.29 -1.65 6.45 24.08 0.16 -1.50 16 9 C 0.59 5.13 7.75 86.42 0.67 5.80 16 10 O -0.57 -9.25 16.50 -4.35 -0.07 -9.32 16 11 N -0.71 -1.78 5.07 -446.59 -2.27 -4.04 16 12 C 0.14 0.29 2.45 44.99 0.11 0.40 16 13 H 0.07 0.51 7.58 -2.38 -0.02 0.49 16 14 C -0.12 0.34 5.39 30.59 0.16 0.51 16 15 C -0.11 0.07 5.57 30.59 0.17 0.24 16 16 C 0.09 0.06 2.61 30.59 0.08 0.14 16 17 H 0.08 -0.16 7.79 -2.39 -0.02 -0.17 16 18 O -0.40 -1.87 9.99 -148.98 -1.49 -3.36 16 19 C 0.06 0.06 5.50 71.98 0.40 0.45 16 20 C -0.11 -0.11 5.05 30.60 0.15 0.05 16 21 C -0.09 0.09 2.92 -10.79 -0.03 0.06 16 22 C -0.15 0.19 8.95 71.98 0.64 0.84 16 23 C -0.15 0.15 9.19 71.98 0.66 0.81 16 24 C -0.13 -0.27 5.54 30.59 0.17 -0.10 16 25 C -0.12 -0.21 5.50 30.59 0.17 -0.04 16 26 C -0.05 -0.24 9.78 21.72 0.21 -0.03 16 27 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.08 -0.51 6.81 -2.39 -0.02 -0.52 16 29 H 0.07 -0.34 8.10 -2.39 -0.02 -0.36 16 30 H 0.11 -0.88 6.08 -2.39 -0.01 -0.89 16 31 H 0.40 -3.74 8.74 -74.06 -0.65 -4.39 16 32 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 33 H -0.26 0.35 7.11 99.48 0.71 1.06 16 34 H 0.41 -0.92 7.72 -92.71 -0.72 -1.63 16 35 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.06 -0.05 8.09 -2.39 -0.02 -0.07 16 40 H 0.05 0.00 6.29 -2.38 -0.02 -0.01 16 41 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 44 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 46 H 0.06 -0.10 6.56 -2.39 -0.02 -0.12 16 47 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 50 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 51 H 0.07 0.11 7.87 -2.39 -0.02 0.09 16 52 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 53 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 54 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 Total: 0.00 -17.68 437.95 -0.55 -18.23 By element: Atomic # 1 Polarization: -7.04 SS G_CDS: -0.44 Total: -7.48 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.60 Total: 8.86 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -2.27 Total: -4.04 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -3.47 Total: -14.05 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.24 Total: -0.76 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.21 Total: -0.75 kcal Total: -17.68 -0.55 -18.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_6739946.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.629 kcal (2) G-P(sol) polarization free energy of solvation -17.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds