Wall clock time and date at job start Sat Mar 6 2021 17:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 C 1.53000 * 109.46835 * 119.99407 * 2 1 3 5 5 C 1.53007 * 109.46692 * 175.00235 * 4 2 1 6 6 O 1.42905 * 109.46919 * 179.97438 * 5 4 2 7 7 C 1.42895 * 114.00128 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47064 * 330.01060 * 7 6 5 9 9 C 1.53006 * 109.47000 * 90.00194 * 7 6 5 10 10 C 1.52997 * 109.47164 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46978 * 299.99874 * 10 9 7 12 12 H 1.08992 * 109.47056 * 300.00064 * 11 10 9 13 13 N 1.46505 * 109.46958 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99797 * 84.99979 * 13 11 10 15 15 O 1.21636 * 119.99846 * 0.02562 * 14 13 11 16 16 C 1.47191 * 119.99582 * 179.97438 * 14 13 11 17 17 C 1.36005 * 123.46505 * 359.71123 * 16 14 13 18 18 S 1.70443 * 110.81653 * 179.89110 * 17 16 14 19 19 C 1.75500 * 92.44633 * 0.31534 * 18 17 16 20 20 C 1.50709 * 124.71307 * 179.78275 * 19 18 17 21 21 O 1.42900 * 109.47074 * 120.04159 * 20 19 18 22 22 Si 1.86299 * 109.46818 * 0.04427 * 20 19 18 23 23 C 1.32770 * 110.57550 * 359.82158 * 19 18 17 24 24 C 1.52996 * 109.46891 * 60.00410 * 11 10 9 25 25 C 1.52997 * 109.47503 * 210.00358 * 7 6 5 26 26 H 1.09000 * 109.47756 * 300.00311 * 1 2 3 27 27 H 1.09003 * 109.46956 * 60.00562 * 1 2 3 28 28 H 1.09007 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47389 * 240.00063 * 2 1 3 30 30 H 1.08996 * 109.47009 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46825 * 299.99518 * 3 2 1 32 32 H 1.09000 * 109.47138 * 59.99311 * 3 2 1 33 33 H 1.08995 * 109.47343 * 55.01020 * 4 2 1 34 34 H 1.08996 * 109.47286 * 295.00299 * 4 2 1 35 35 H 1.09001 * 109.47084 * 60.00797 * 5 4 2 36 36 H 1.08996 * 109.47307 * 300.00051 * 5 4 2 37 37 H 1.09001 * 109.47002 * 59.99969 * 9 7 6 38 38 H 1.09000 * 109.47050 * 300.00235 * 9 7 6 39 39 H 1.09002 * 109.47045 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.47375 * 59.99966 * 10 9 7 41 41 H 0.97001 * 119.99745 * 265.00017 * 13 11 10 42 42 H 1.07996 * 124.59013 * 359.97438 * 17 16 14 43 43 H 1.09000 * 109.46936 * 240.04360 * 20 19 18 44 44 H 0.96699 * 114.00055 * 300.00408 * 21 20 19 45 45 H 1.48494 * 110.00207 * 58.67833 * 22 20 19 46 46 H 1.48502 * 109.99635 * 180.02562 * 22 20 19 47 47 H 1.08005 * 123.45610 * 179.97438 * 23 19 18 48 48 H 1.09004 * 109.47368 * 179.97438 * 24 11 10 49 49 H 1.09001 * 109.47372 * 59.99964 * 24 11 10 50 50 H 1.09002 * 109.47153 * 60.00043 * 25 7 6 51 51 H 1.09001 * 109.46832 * 300.00234 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1881 6 8 4.0412 -1.5039 2.3552 7 6 5.4610 -1.6601 2.3973 8 1 5.8485 -1.7351 1.3813 9 6 6.0868 -0.4499 3.0937 10 6 7.6069 -0.6169 3.1383 11 6 7.9578 -1.8889 3.9128 12 1 7.5706 -1.8140 4.9288 13 7 9.4135 -2.0484 3.9559 14 6 10.1318 -1.4239 4.9102 15 8 9.5714 -0.7284 5.7358 16 6 11.5943 -1.5847 4.9538 17 6 12.2914 -2.3496 4.0714 18 16 13.9599 -2.3041 4.4165 19 6 13.7234 -1.2370 5.7895 20 6 14.8282 -0.7180 6.6735 21 8 14.8480 0.7099 6.6225 22 14 16.4635 -1.3833 6.0787 23 6 12.4358 -0.9511 5.9419 24 6 7.3321 -3.0989 3.2163 25 6 5.8114 -2.9320 3.1721 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.6054 -1.7197 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 3.9994 0.1677 1.1422 36 1 3.8532 -1.3938 0.3004 37 1 5.6992 -0.3749 4.1098 38 1 5.8371 0.4562 2.5418 39 1 8.0527 0.2450 3.6348 40 1 7.9942 -0.6917 2.1221 41 1 9.8603 -2.6034 3.2977 42 1 11.8479 -2.9088 3.2609 43 1 14.6553 -1.0426 7.6996 44 1 14.9976 1.0699 5.7375 45 1 16.6963 -0.9744 4.6703 46 1 17.5613 -0.8793 6.9426 47 1 12.0566 -0.3108 6.7247 48 1 7.5825 -4.0052 3.7678 49 1 7.7194 -3.1738 2.2002 50 1 5.3656 -3.7941 2.6759 51 1 5.4239 -2.8569 4.1881 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_6894386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:48:30 Heat of formation + Delta-G solvation = -106.899764 kcal Electronic energy + Delta-G solvation = -28667.901449 eV Core-core repulsion = 24659.393075 eV Total energy + Delta-G solvation = -4008.508374 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.170 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.36204 -40.13673 -38.97439 -38.24858 -37.21109 -36.88763 -34.82882 -32.00444 -31.90091 -30.68067 -29.08168 -28.06692 -26.97512 -25.68944 -24.31049 -23.70457 -23.03424 -21.91946 -21.36798 -20.83656 -20.31482 -19.02736 -18.10921 -17.89400 -17.77061 -17.02999 -16.83743 -16.52668 -16.42360 -15.98677 -15.72855 -15.54835 -15.26356 -14.93509 -14.86958 -14.83100 -14.54673 -14.16139 -14.07152 -13.77106 -13.68156 -13.57728 -13.52157 -13.27522 -13.10561 -12.95509 -12.65161 -12.63802 -12.43693 -12.38733 -12.24523 -12.19278 -11.86760 -11.74807 -11.64466 -11.53468 -11.45259 -11.40740 -11.04742 -10.77434 -10.44330 -10.19897 -9.97693 -9.44472 -5.05377 -0.33904 0.39553 0.69694 0.80978 1.22201 1.55857 1.90378 2.03836 2.25269 2.62966 3.29087 3.54841 3.60213 3.64589 3.85352 3.89217 3.90794 3.96850 4.00097 4.03414 4.09444 4.16338 4.24155 4.27597 4.28440 4.37773 4.40908 4.44837 4.49574 4.52039 4.59253 4.71053 4.71352 4.76142 4.80678 4.89093 4.92838 4.97472 4.98860 5.00107 5.05923 5.07534 5.08307 5.10749 5.16199 5.24384 5.26018 5.29417 5.40118 5.43854 5.45708 6.31178 6.39273 6.46333 7.14654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.112 4.112 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.090 3.910 8 H 0.077 0.923 9 C -0.134 4.134 10 C -0.119 4.119 11 C 0.145 3.855 12 H 0.063 0.937 13 N -0.706 5.706 14 C 0.575 3.425 15 O -0.585 6.585 16 C -0.185 4.185 17 C -0.188 4.188 18 S 0.254 5.746 19 C -0.247 4.247 20 C -0.048 4.048 21 O -0.545 6.545 22 Si 0.732 3.268 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.111 4.111 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.416 0.584 42 H 0.207 0.793 43 H 0.129 0.871 44 H 0.388 0.612 45 H -0.251 1.251 46 H -0.276 1.276 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -6.266 -7.522 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.017 4.017 6 O -0.323 6.323 7 C 0.033 3.967 8 H 0.095 0.905 9 C -0.173 4.173 10 C -0.158 4.158 11 C 0.040 3.960 12 H 0.082 0.918 13 N -0.357 5.357 14 C 0.362 3.638 15 O -0.467 6.467 16 C -0.202 4.202 17 C -0.327 4.327 18 S 0.521 5.479 19 C -0.364 4.364 20 C -0.159 4.159 21 O -0.354 6.354 22 Si 0.633 3.367 23 C -0.107 4.107 24 C -0.150 4.150 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.254 0.746 42 H 0.224 0.776 43 H 0.146 0.854 44 H 0.238 0.762 45 H -0.176 1.176 46 H -0.202 1.202 47 H 0.147 0.853 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.508 -6.391 -7.150 10.597 hybrid contribution -1.622 2.111 0.306 2.680 sum 2.886 -4.280 -6.845 8.573 Atomic orbital electron populations 1.21840 0.94654 1.02048 1.02043 1.21038 0.96193 0.96306 0.97484 1.21937 1.01176 0.95831 1.02019 1.21562 0.93538 1.01244 0.98577 1.22711 0.95237 0.96352 0.87446 1.87895 1.22158 1.78717 1.43494 1.22208 0.80386 0.94644 0.99506 0.90523 1.21939 0.94912 0.99028 1.01420 1.21789 0.95311 0.97441 1.01238 1.21011 0.79121 0.95869 0.99961 0.91826 1.45747 1.07619 1.50506 1.31852 1.17950 0.86602 0.78733 0.80520 1.90798 1.73021 1.41329 1.41508 1.20096 0.93359 1.06030 1.00752 1.26198 1.00634 1.02336 1.03486 1.82928 1.01728 1.41981 1.21271 1.24839 0.98565 1.08325 1.04648 1.24763 1.04504 0.83381 1.03211 1.86611 1.93984 1.18862 1.35914 0.94452 0.73432 0.90019 0.78841 1.20971 0.91772 0.99277 0.98664 1.21718 0.94077 0.96737 1.02419 1.21516 0.95465 0.96971 1.00996 0.92894 0.92074 0.92424 0.90489 0.92361 0.92150 0.92991 0.91463 0.92125 0.92903 0.92398 0.92641 0.91495 0.93505 0.89758 0.74632 0.77637 0.85359 0.76234 1.17555 1.20202 0.85286 0.89417 0.88667 0.89689 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 9.19 71.98 0.66 0.84 16 2 C -0.09 0.12 2.92 -10.79 -0.03 0.08 16 3 C -0.15 0.20 8.95 71.98 0.64 0.85 16 4 C -0.11 -0.08 5.05 30.60 0.15 0.07 16 5 C 0.06 0.04 5.50 71.98 0.40 0.43 16 6 O -0.40 -1.74 9.99 -148.98 -1.49 -3.23 16 7 C 0.09 0.00 2.61 30.60 0.08 0.08 16 8 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 9 C -0.13 -0.26 5.54 30.60 0.17 -0.09 16 10 C -0.12 -0.12 5.49 30.59 0.17 0.04 16 11 C 0.14 0.04 2.45 44.99 0.11 0.15 16 12 H 0.06 0.43 7.57 -2.39 -0.02 0.41 16 13 N -0.71 0.81 5.05 -446.02 -2.25 -1.44 16 14 C 0.57 3.91 7.76 86.59 0.67 4.59 16 15 O -0.59 -9.92 16.46 -4.15 -0.07 -9.98 16 16 C -0.18 -0.50 5.98 -19.87 -0.12 -0.62 16 17 C -0.19 1.00 10.38 67.30 0.70 1.70 16 18 S 0.25 -1.50 20.18 -56.49 -1.14 -2.64 16 19 C -0.25 0.01 5.68 24.51 0.14 0.15 16 20 C -0.05 0.02 2.95 71.24 0.21 0.23 16 21 O -0.55 -1.82 12.85 -148.98 -1.91 -3.74 16 22 Si 0.73 -2.67 30.91 68.60 2.12 -0.55 16 23 C -0.08 -0.40 9.91 22.67 0.22 -0.17 16 24 C -0.11 0.61 5.39 30.61 0.17 0.78 16 25 C -0.11 0.21 5.58 30.61 0.17 0.38 16 26 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.06 -0.11 6.56 -2.39 -0.02 -0.12 16 31 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.05 0.00 6.29 -2.39 -0.02 -0.02 16 36 H 0.06 -0.10 8.08 -2.39 -0.02 -0.11 16 37 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.07 0.12 7.87 -2.39 -0.02 0.10 16 39 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.42 -3.68 7.10 -92.71 -0.66 -4.34 16 42 H 0.21 -2.73 7.01 -2.91 -0.02 -2.75 16 43 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 44 H 0.39 -1.12 8.70 -74.06 -0.64 -1.77 16 45 H -0.25 0.43 7.11 99.48 0.71 1.13 16 46 H -0.28 -0.95 7.11 99.48 0.71 -0.24 16 47 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 48 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 50 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 51 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -20.27 416.11 -0.58 -20.84 By element: Atomic # 1 Polarization: -8.41 SS G_CDS: -0.35 Total: -8.76 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 4.51 Total: 9.49 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.25 Total: -1.44 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -3.47 Total: -16.95 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -1.14 Total: -2.64 kcal Total: -20.27 -0.58 -20.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_6894386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.056 kcal (2) G-P(sol) polarization free energy of solvation -20.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds