Wall clock time and date at job start Sat Mar 6 2021 20:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.39155 * 120.07430 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07039 * 0.02562 * 4 3 2 6 6 C 1.42895 * 117.00029 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47422 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99723 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99608 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47211 * 34.99680 * 10 9 7 12 12 C 1.53001 * 109.46798 * 155.00142 * 10 9 7 13 13 C 1.53007 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46973 * 299.99770 * 13 12 10 15 15 H 1.08999 * 109.47562 * 299.99862 * 14 13 12 16 16 C 1.52998 * 109.46956 * 180.02562 * 14 13 12 17 17 F 1.39901 * 109.47324 * 59.99800 * 16 14 13 18 18 F 1.39897 * 109.47052 * 180.02562 * 16 14 13 19 19 F 1.39907 * 109.46992 * 300.00307 * 16 14 13 20 20 C 1.53001 * 109.47102 * 60.00331 * 14 13 12 21 21 C 1.53001 * 109.46862 * 274.99760 * 10 9 7 22 22 C 1.38558 * 119.85540 * 179.97438 * 4 3 2 23 23 C 1.38247 * 119.99917 * 0.02562 * 22 4 3 24 24 C 1.38255 * 120.14468 * 359.97438 * 23 22 4 25 25 C 1.50700 * 119.92343 * 180.02562 * 24 23 22 26 26 O 1.42901 * 109.46960 * 245.00106 * 25 24 23 27 27 Si 1.86300 * 109.47377 * 4.99947 * 25 24 23 28 28 C 1.38242 * 120.14765 * 359.97438 * 24 23 22 29 29 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 30 30 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 32 32 H 1.09007 * 109.47041 * 299.99647 * 6 5 4 33 33 H 1.08999 * 109.47176 * 59.99627 * 6 5 4 34 34 H 0.97003 * 120.00382 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46982 * 299.99556 * 12 10 9 36 36 H 1.08999 * 109.47296 * 60.00104 * 12 10 9 37 37 H 1.08999 * 109.46864 * 60.00059 * 13 12 10 38 38 H 1.09000 * 109.47098 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.47296 * 59.99367 * 20 14 13 40 40 H 1.08994 * 109.46982 * 179.97438 * 20 14 13 41 41 H 1.08999 * 109.47562 * 300.00099 * 21 10 9 42 42 H 1.09004 * 109.47325 * 60.00318 * 21 10 9 43 43 H 1.07995 * 120.00001 * 180.02562 * 22 4 3 44 44 H 1.07998 * 119.92703 * 180.27362 * 23 22 4 45 45 H 1.08994 * 109.47427 * 125.00100 * 25 24 23 46 46 H 0.96694 * 114.00320 * 60.00300 * 26 25 24 47 47 H 1.48502 * 110.00011 * 58.68080 * 27 25 24 48 48 H 1.48499 * 110.00171 * 180.02562 * 27 25 24 49 49 H 1.07998 * 119.99453 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6002 0.3008 0.0017 7 6 6.2519 -1.0580 0.0009 8 8 5.5670 -2.0589 -0.0001 9 7 7.5957 -1.1609 0.0012 10 6 8.2291 -2.4819 0.0010 11 1 7.6273 -3.1733 -0.5887 12 6 9.6286 -2.3763 -0.6082 13 6 10.2905 -3.7558 -0.6079 14 6 10.3973 -4.2698 0.8292 15 1 10.9990 -3.5781 1.4188 16 6 11.0596 -5.6490 0.8296 17 9 12.3393 -5.5519 0.2727 18 9 11.1568 -6.1192 2.1436 19 9 10.2879 -6.5372 0.0727 20 6 8.9978 -4.3755 1.4384 21 6 8.3359 -2.9965 1.4379 22 6 4.0602 2.5235 0.0000 23 6 3.3027 3.6800 -0.0005 24 6 1.9222 3.6057 -0.0011 25 6 1.1014 4.8696 -0.0022 26 8 0.3639 4.9597 1.2185 27 14 2.2306 6.3434 -0.1558 28 6 1.2930 2.3748 -0.0016 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 5.9071 0.8510 -0.8879 33 1 5.9058 0.8502 0.8921 34 1 8.1435 -0.3603 0.0023 35 1 9.5525 -2.0097 -1.6319 36 1 10.2304 -1.6849 -0.0184 37 1 9.6888 -4.4475 -1.1975 38 1 11.2877 -3.6805 -1.0415 39 1 8.3961 -5.0672 0.8489 40 1 9.0739 -4.7421 2.4620 41 1 8.9377 -2.3051 2.0277 42 1 7.3389 -3.0717 1.8720 43 1 5.1384 2.5841 0.0000 44 1 3.7905 4.6435 -0.0054 45 1 0.4095 4.8528 -0.8443 46 1 0.9168 4.9794 2.0115 47 1 3.0264 6.2455 -1.4058 48 1 1.4333 7.5962 -0.1575 49 1 0.2145 2.3197 -0.0016 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:21:32 Heat of formation + Delta-G solvation = -271.099296 kcal Electronic energy + Delta-G solvation = -36275.688625 eV Core-core repulsion = 30754.938898 eV Total energy + Delta-G solvation = -5520.749727 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.153 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -51.12467 -48.61613 -48.60324 -41.82527 -41.11557 -39.73323 -39.03543 -38.76235 -36.91315 -35.57667 -32.30238 -31.93649 -31.71593 -31.37241 -29.29691 -28.44950 -26.44689 -26.02161 -23.99813 -23.67972 -22.89714 -22.44349 -21.60625 -21.13670 -19.78218 -19.35310 -19.26623 -18.65542 -18.55388 -18.31139 -17.90305 -17.49901 -17.25318 -17.03949 -16.67444 -16.10226 -16.01884 -15.82171 -15.67499 -15.64828 -15.50422 -15.38685 -15.10424 -15.00906 -14.94559 -14.77342 -14.76735 -14.69027 -14.48113 -14.29345 -13.80503 -13.71565 -13.61799 -13.52591 -13.43326 -13.27631 -12.63038 -12.54279 -12.49359 -12.21966 -12.16408 -12.11527 -12.06987 -11.96730 -11.75015 -11.62471 -11.43515 -10.93870 -10.42631 -10.15261 -9.78860 -8.90968 -4.96387 0.17191 0.28408 1.34264 1.48458 1.49375 1.68517 1.78654 2.01191 2.30737 2.56579 2.57089 2.82435 2.95563 3.03695 3.50005 3.53783 3.61217 3.65789 3.71055 3.87365 3.90361 3.91880 4.06143 4.07649 4.10007 4.14525 4.15769 4.23584 4.27874 4.28856 4.29252 4.36015 4.39577 4.49943 4.58091 4.64065 4.65343 4.72520 4.88216 4.97726 5.01100 5.05755 5.06680 5.12932 5.20588 5.23997 5.37792 5.44765 5.60188 5.97608 6.44238 6.56324 6.78586 7.18806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.075 3.925 4 C 0.085 3.915 5 O -0.315 6.315 6 C 0.033 3.967 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.703 5.703 10 C 0.142 3.858 11 H 0.062 0.938 12 C -0.110 4.110 13 C -0.117 4.117 14 C -0.123 4.123 15 H 0.141 0.859 16 C 0.447 3.553 17 F -0.189 7.189 18 F -0.192 7.192 19 F -0.193 7.193 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.159 4.159 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.077 4.077 26 O -0.558 6.558 27 Si 0.788 3.212 28 C -0.154 4.154 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.423 0.577 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.102 0.898 46 H 0.396 0.604 47 H -0.279 1.279 48 H -0.304 1.304 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 8.472 1.556 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.044 4.044 7 C 0.298 3.702 8 O -0.451 6.451 9 N -0.358 5.358 10 C 0.037 3.963 11 H 0.081 0.919 12 C -0.148 4.148 13 C -0.155 4.155 14 C -0.142 4.142 15 H 0.159 0.841 16 C 0.393 3.607 17 F -0.170 7.170 18 F -0.174 7.174 19 F -0.175 7.175 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.177 4.177 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.186 4.186 26 O -0.366 6.366 27 Si 0.694 3.306 28 C -0.172 4.172 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.196 0.804 44 H 0.179 0.821 45 H 0.120 0.880 46 H 0.246 0.754 47 H -0.206 1.206 48 H -0.232 1.232 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.559 8.006 0.669 9.769 hybrid contribution -0.718 -0.876 -0.352 1.186 sum 4.841 7.129 0.318 8.623 Atomic orbital electron populations 1.23270 0.76906 1.05157 1.02027 1.86189 1.22909 1.26684 1.89119 1.18688 0.90022 0.85545 1.02784 1.18586 0.88123 0.86619 1.02675 1.86224 1.18361 1.29029 1.89276 1.22807 0.79240 0.95276 1.07096 1.20582 0.83190 0.90784 0.75661 1.90783 1.64183 1.40203 1.49926 1.45678 1.04996 1.10262 1.74818 1.21036 0.94549 0.84118 0.96556 0.91928 1.21694 0.93020 0.96961 1.03095 1.21594 1.03272 0.97756 0.92884 1.22598 0.98870 0.90427 1.02334 0.84091 1.21073 0.76806 0.89990 0.72857 1.93176 1.41778 1.96464 1.85579 1.93172 1.96158 1.90650 1.37393 1.93165 1.75298 1.72340 1.76707 1.21529 0.93194 0.98626 1.02059 1.21794 1.00897 0.96104 0.96939 1.21402 1.02359 0.89225 1.04691 1.21013 0.92166 0.99036 1.00316 1.20202 0.94601 0.94747 1.02528 1.25281 1.01024 1.02395 0.89936 1.86467 1.37544 1.96651 1.15932 0.93668 0.79194 0.72400 0.85369 1.21009 1.00433 0.90681 1.05119 0.91957 0.87124 0.91720 0.85581 0.85188 0.73816 0.89270 0.87898 0.91361 0.88725 0.91783 0.90028 0.88758 0.92942 0.80429 0.82138 0.88027 0.75447 1.20611 1.23231 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.70 10.28 -79.68 -0.82 -4.52 16 3 C 0.07 0.58 6.70 22.57 0.15 0.73 16 4 C 0.09 0.40 6.70 22.57 0.15 0.55 16 5 O -0.32 -2.37 9.45 -67.09 -0.63 -3.01 16 6 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 7 C 0.51 0.83 7.87 87.66 0.69 1.52 16 8 O -0.57 -8.36 16.16 16.01 0.26 -8.10 16 9 N -0.70 4.91 5.08 -442.53 -2.25 2.67 16 10 C 0.14 -0.66 2.46 44.99 0.11 -0.55 16 11 H 0.06 0.15 7.58 -2.39 -0.02 0.13 16 12 C -0.11 1.16 5.39 30.60 0.16 1.32 16 13 C -0.12 0.84 4.96 30.60 0.15 0.99 16 14 C -0.12 0.68 2.16 -10.79 -0.02 0.66 16 15 H 0.14 -1.43 8.14 -2.39 -0.02 -1.45 16 16 C 0.45 0.31 2.69 71.98 0.19 0.51 16 17 F -0.19 -0.39 16.80 44.97 0.76 0.36 16 18 F -0.19 -0.66 16.80 44.97 0.76 0.10 16 19 F -0.19 -0.85 16.28 44.97 0.73 -0.12 16 20 C -0.12 0.37 4.96 30.58 0.15 0.52 16 21 C -0.12 0.49 5.49 30.58 0.17 0.65 16 22 C -0.16 0.60 9.04 22.35 0.20 0.81 16 23 C -0.11 0.47 8.66 22.28 0.19 0.66 16 24 C -0.12 0.04 5.35 -19.86 -0.11 -0.07 16 25 C -0.08 0.11 2.80 71.24 0.20 0.31 16 26 O -0.56 0.22 12.83 -148.98 -1.91 -1.69 16 27 Si 0.79 -3.65 29.79 68.60 2.04 -1.61 16 28 C -0.15 -0.57 8.67 22.35 0.19 -0.38 16 29 H 0.06 0.03 7.66 -2.39 -0.02 0.01 16 30 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.06 0.03 7.67 -2.39 -0.02 0.01 16 32 H 0.13 -1.40 7.66 -2.38 -0.02 -1.41 16 33 H 0.13 -1.52 7.67 -2.39 -0.02 -1.54 16 34 H 0.42 -6.61 8.60 -92.71 -0.80 -7.40 16 35 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.10 -1.56 8.14 -2.39 -0.02 -1.58 16 37 H 0.07 -0.28 7.80 -2.39 -0.02 -0.29 16 38 H 0.09 -0.80 7.80 -2.39 -0.02 -0.82 16 39 H 0.06 0.02 7.80 -2.39 -0.02 0.00 16 40 H 0.08 -0.24 7.80 -2.39 -0.02 -0.26 16 41 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.18 -2.23 6.30 -2.91 -0.02 -2.24 16 44 H 0.16 -1.70 4.89 -2.91 -0.01 -1.72 16 45 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 46 H 0.40 -3.41 8.70 -74.06 -0.64 -4.05 16 47 H -0.28 0.21 7.11 99.48 0.71 0.92 16 48 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 49 H 0.14 0.37 6.30 -2.91 -0.02 0.35 16 Total: 0.00 -32.42 407.67 2.63 -29.79 By element: Atomic # 1 Polarization: -23.14 SS G_CDS: -0.38 Total: -23.52 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.08 Total: 9.64 kcal Atomic # 7 Polarization: 4.91 SS G_CDS: -2.25 Total: 2.67 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -3.11 Total: -17.32 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 2.24 Total: 0.34 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.04 Total: -1.61 kcal Total: -32.42 2.63 -29.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.306 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds