Wall clock time and date at job start Sat Mar 6 2021 20:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47032 * 2 1 4 4 C 1.50695 * 109.47015 * 120.00111 * 2 1 3 5 5 C 1.38241 * 120.00226 * 64.99828 * 4 2 1 6 6 C 1.38230 * 119.99983 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00195 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 89.99988 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08992 * 112.85173 * 43.80013 * 13 12 11 15 15 C 1.53787 * 113.61228 * 174.99997 * 13 12 11 16 16 C 1.53776 * 87.07971 * 139.97805 * 15 13 12 17 17 H 1.09004 * 113.61682 * 89.11771 * 16 15 13 18 18 O 1.42899 * 113.61339 * 219.93156 * 16 15 13 19 19 C 1.53781 * 87.08649 * 334.56685 * 16 15 13 20 20 C 1.38237 * 119.99973 * 0.25752 * 7 6 5 21 21 C 1.38234 * 119.99939 * 245.01942 * 4 2 1 22 22 H 0.96698 * 114.00149 * 300.00134 * 1 2 3 23 23 H 1.09004 * 109.46839 * 240.00157 * 2 1 3 24 24 H 1.48505 * 109.99993 * 299.99817 * 3 2 1 25 25 H 1.48497 * 110.00151 * 61.32038 * 3 2 1 26 26 H 1.07999 * 119.99721 * 359.97438 * 5 4 2 27 27 H 1.07998 * 119.99909 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47060 * 330.00024 * 8 7 6 29 29 H 1.09001 * 109.47380 * 209.99937 * 8 7 6 30 30 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 32 32 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 33 33 H 1.08999 * 113.61008 * 254.52793 * 15 13 12 34 34 H 1.09001 * 113.61614 * 25.34468 * 15 13 12 35 35 H 0.96706 * 114.00506 * 180.02562 * 18 16 15 36 36 H 1.08998 * 113.61029 * 270.89062 * 19 16 15 37 37 H 1.08997 * 113.61702 * 139.98220 * 19 16 15 38 38 H 1.08001 * 119.99912 * 179.72830 * 20 7 6 39 39 H 1.08000 * 120.00083 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6846 -2.0602 1.3984 6 6 2.1450 -2.7117 2.5273 7 6 2.8524 -2.0136 3.4880 8 6 3.3537 -2.7237 4.7191 9 6 4.7350 -3.2670 4.4581 10 8 5.2607 -3.0940 3.3790 11 7 5.3861 -3.9449 5.4240 12 6 6.7291 -4.4725 5.1705 13 6 7.2374 -5.1947 6.4199 14 1 6.4814 -5.8329 6.8770 15 6 8.5932 -5.8924 6.2193 16 6 8.9631 -5.4068 7.6307 17 1 8.6791 -6.1026 8.4203 18 8 10.3151 -4.9586 7.7459 19 6 7.9507 -4.2687 7.4193 20 6 3.0949 -0.6628 3.3224 21 6 2.6383 -0.0122 2.1914 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5614 2.4679 -1.2086 25 1 1.5879 2.4585 1.2242 26 1 1.1316 -2.6055 0.6479 27 1 1.9519 -3.7661 2.6586 28 1 2.6805 -3.5453 4.9641 29 1 3.3905 -2.0230 5.5532 30 1 4.9657 -4.0829 6.2873 31 1 7.4022 -3.6507 4.9262 32 1 6.6927 -5.1728 4.3360 33 1 8.5181 -6.9766 6.1362 34 1 9.2002 -5.4484 5.4303 35 1 10.5539 -4.6523 8.6315 36 1 8.3828 -3.3800 6.9592 37 1 7.3571 -4.0421 8.3049 38 1 3.6438 -0.1164 4.0752 39 1 2.8304 1.0425 2.0606 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12309068_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:36:26 Heat of formation + Delta-G solvation = -69.099983 kcal Electronic energy + Delta-G solvation = -20725.507042 eV Core-core repulsion = 17407.173638 eV Total energy + Delta-G solvation = -3318.333404 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22538 -40.56852 -39.81218 -37.70680 -36.59597 -34.97316 -34.03059 -31.89990 -30.34901 -28.41602 -26.85978 -25.63404 -23.78171 -23.46368 -22.16538 -21.42880 -20.52246 -18.77469 -18.46039 -17.86638 -17.39916 -16.95568 -16.72054 -16.36779 -16.22797 -16.05528 -15.73260 -15.30565 -14.97202 -14.73413 -14.52318 -14.44001 -13.87923 -13.70230 -13.55401 -13.20670 -13.05928 -12.87329 -12.67822 -12.56750 -12.21520 -11.98472 -11.93675 -11.52315 -11.44075 -10.95197 -10.77829 -10.52386 -10.07892 -9.81636 -9.58887 -4.89825 0.28436 0.51435 1.33951 1.63172 1.68083 1.99572 2.11646 2.80737 3.12763 3.36770 3.42895 3.44178 3.59144 3.66667 3.78407 3.80223 3.86399 3.95333 4.06206 4.13584 4.20974 4.24737 4.38912 4.50426 4.58197 4.60992 4.63135 4.69607 4.73071 4.77915 4.87957 5.01540 5.03625 5.11461 5.23402 5.41264 5.43167 5.59089 5.62487 6.04465 6.44967 6.45703 6.62507 7.24468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.075 4.075 3 Si 0.687 3.313 4 C -0.117 4.117 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.062 4.062 8 C -0.104 4.104 9 C 0.512 3.488 10 O -0.526 6.526 11 N -0.733 5.733 12 C 0.132 3.868 13 C -0.124 4.124 14 H 0.100 0.900 15 C -0.120 4.120 16 C 0.075 3.925 17 H 0.083 0.917 18 O -0.560 6.560 19 C -0.165 4.165 20 C -0.100 4.100 21 C -0.116 4.116 22 H 0.375 0.625 23 H 0.118 0.882 24 H -0.258 1.258 25 H -0.261 1.261 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.380 0.620 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -1.338 6.510 6.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.185 4.185 3 Si 0.588 3.412 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.063 4.063 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.401 6.401 11 N -0.385 5.385 12 C 0.008 3.992 13 C -0.143 4.143 14 H 0.118 0.882 15 C -0.158 4.158 16 C 0.016 3.984 17 H 0.101 0.899 18 O -0.365 6.365 19 C -0.203 4.203 20 C -0.118 4.118 21 C -0.134 4.134 22 H 0.223 0.777 23 H 0.135 0.865 24 H -0.183 1.183 25 H -0.186 1.186 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.235 0.765 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.227 0.773 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.629 -0.846 4.518 4.639 hybrid contribution -1.273 -0.216 1.679 2.118 sum -0.644 -1.063 6.197 6.320 Atomic orbital electron populations 1.86602 1.17757 1.80001 1.49255 1.25025 0.83886 1.11046 0.98579 0.94826 0.91813 0.74507 0.80027 1.20250 0.99832 0.94993 0.96639 1.20966 0.98698 0.93746 0.97423 1.21013 0.97832 0.99613 0.93760 1.19272 0.97914 0.93740 0.95359 1.20692 0.94220 1.01602 0.97817 1.20565 0.87408 0.77996 0.84197 1.90766 1.68295 1.56953 1.24135 1.46011 1.18227 1.57528 1.16784 1.21324 0.83000 0.97944 0.96905 1.22578 0.97019 0.98445 0.96226 0.88207 1.23051 0.94838 1.00996 0.96935 1.23316 0.81618 0.95540 0.97925 0.89939 1.86546 1.28277 1.85448 1.36235 1.23800 0.98270 0.98582 0.99608 1.20905 0.99242 0.93931 0.97766 1.20985 0.98662 0.99567 0.94173 0.77748 0.86453 1.18271 1.18556 0.85653 0.86000 0.87761 0.87741 0.76533 0.91076 0.91124 0.90330 0.88656 0.77283 0.88926 0.91076 0.85830 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.11 12.83 -35.23 -0.45 -1.56 16 2 C -0.08 -0.07 2.80 36.00 0.10 0.03 16 3 Si 0.69 0.06 29.88 -169.99 -5.08 -5.02 16 4 C -0.12 -0.18 5.35 -104.62 -0.56 -0.74 16 5 C -0.09 -0.17 9.69 -39.58 -0.38 -0.56 16 6 C -0.10 -0.15 9.70 -39.59 -0.38 -0.54 16 7 C -0.06 -0.06 4.37 -104.62 -0.46 -0.52 16 8 C -0.10 0.17 5.83 -29.03 -0.17 0.00 16 9 C 0.51 0.47 7.82 -10.98 -0.09 0.39 16 10 O -0.53 -2.97 16.03 5.56 0.09 -2.88 16 11 N -0.73 1.22 5.56 -60.29 -0.33 0.89 16 12 C 0.13 -0.11 5.51 -4.04 -0.02 -0.13 16 13 C -0.12 0.33 3.76 -89.80 -0.34 0.00 16 14 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 15 C -0.12 0.17 7.47 -25.92 -0.19 -0.03 16 16 C 0.08 -0.12 5.21 -25.92 -0.14 -0.25 16 17 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 18 O -0.56 -0.09 13.67 -35.23 -0.48 -0.57 16 19 C -0.16 0.40 7.47 -25.92 -0.19 0.20 16 20 C -0.10 -0.11 9.70 -39.58 -0.38 -0.49 16 21 C -0.12 -0.13 8.67 -39.58 -0.34 -0.47 16 22 H 0.38 -0.31 8.70 45.56 0.40 0.09 16 23 H 0.12 0.06 7.96 -51.93 -0.41 -0.36 16 24 H -0.26 -0.83 7.11 56.52 0.40 -0.43 16 25 H -0.26 -0.44 7.01 56.52 0.40 -0.04 16 26 H 0.13 0.16 8.06 -52.49 -0.42 -0.26 16 27 H 0.12 0.00 8.06 -52.49 -0.42 -0.43 16 28 H 0.10 -0.39 8.09 -51.93 -0.42 -0.81 16 29 H 0.10 -0.40 8.08 -51.93 -0.42 -0.82 16 30 H 0.40 -1.83 8.47 -40.82 -0.35 -2.18 16 31 H 0.07 0.05 7.84 -51.93 -0.41 -0.36 16 32 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 34 H 0.09 -0.02 8.10 -51.93 -0.42 -0.44 16 35 H 0.38 -1.46 9.12 45.56 0.42 -1.05 16 36 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 37 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 38 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 39 H 0.13 -0.06 4.85 -52.49 -0.25 -0.32 16 LS Contribution 329.43 15.07 4.96 4.96 Total: 0.00 -9.13 329.43 -9.71 -18.84 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: -4.86 Total: -11.53 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.55 Total: -3.12 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.33 Total: 0.89 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.84 Total: -5.02 kcal Atomic # 14 Polarization: 0.06 SS G_CDS: -5.08 Total: -5.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -9.13 -9.71 -18.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.264 kcal (2) G-P(sol) polarization free energy of solvation -9.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds