Wall clock time and date at job start Sat Mar 6 2021 20:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47032 * 2 1 4 4 C 1.50695 * 109.47015 * 120.00111 * 2 1 3 5 5 C 1.38241 * 120.00226 * 64.99828 * 4 2 1 6 6 C 1.38230 * 119.99983 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00195 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 89.99988 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08992 * 112.85173 * 43.80013 * 13 12 11 15 15 C 1.53787 * 113.61228 * 174.99997 * 13 12 11 16 16 C 1.53776 * 87.07971 * 139.97805 * 15 13 12 17 17 H 1.09004 * 113.61682 * 89.11771 * 16 15 13 18 18 O 1.42899 * 113.61339 * 219.93156 * 16 15 13 19 19 C 1.53781 * 87.08649 * 334.56685 * 16 15 13 20 20 C 1.38237 * 119.99973 * 0.25752 * 7 6 5 21 21 C 1.38234 * 119.99939 * 245.01942 * 4 2 1 22 22 H 0.96698 * 114.00149 * 300.00134 * 1 2 3 23 23 H 1.09004 * 109.46839 * 240.00157 * 2 1 3 24 24 H 1.48505 * 109.99993 * 299.99817 * 3 2 1 25 25 H 1.48497 * 110.00151 * 61.32038 * 3 2 1 26 26 H 1.07999 * 119.99721 * 359.97438 * 5 4 2 27 27 H 1.07998 * 119.99909 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47060 * 330.00024 * 8 7 6 29 29 H 1.09001 * 109.47380 * 209.99937 * 8 7 6 30 30 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 32 32 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 33 33 H 1.08999 * 113.61008 * 254.52793 * 15 13 12 34 34 H 1.09001 * 113.61614 * 25.34468 * 15 13 12 35 35 H 0.96706 * 114.00506 * 180.02562 * 18 16 15 36 36 H 1.08998 * 113.61029 * 270.89062 * 19 16 15 37 37 H 1.08997 * 113.61702 * 139.98220 * 19 16 15 38 38 H 1.08001 * 119.99912 * 179.72830 * 20 7 6 39 39 H 1.08000 * 120.00083 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6846 -2.0602 1.3984 6 6 2.1450 -2.7117 2.5273 7 6 2.8524 -2.0136 3.4880 8 6 3.3537 -2.7237 4.7191 9 6 4.7350 -3.2670 4.4581 10 8 5.2607 -3.0940 3.3790 11 7 5.3861 -3.9449 5.4240 12 6 6.7291 -4.4725 5.1705 13 6 7.2374 -5.1947 6.4199 14 1 6.4814 -5.8329 6.8770 15 6 8.5932 -5.8924 6.2193 16 6 8.9631 -5.4068 7.6307 17 1 8.6791 -6.1026 8.4203 18 8 10.3151 -4.9586 7.7459 19 6 7.9507 -4.2687 7.4193 20 6 3.0949 -0.6628 3.3224 21 6 2.6383 -0.0122 2.1914 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5614 2.4679 -1.2086 25 1 1.5879 2.4585 1.2242 26 1 1.1316 -2.6055 0.6479 27 1 1.9519 -3.7661 2.6586 28 1 2.6805 -3.5453 4.9641 29 1 3.3905 -2.0230 5.5532 30 1 4.9657 -4.0829 6.2873 31 1 7.4022 -3.6507 4.9262 32 1 6.6927 -5.1728 4.3360 33 1 8.5181 -6.9766 6.1362 34 1 9.2002 -5.4484 5.4303 35 1 10.5539 -4.6523 8.6315 36 1 8.3828 -3.3800 6.9592 37 1 7.3571 -4.0421 8.3049 38 1 3.6438 -0.1164 4.0752 39 1 2.8304 1.0425 2.0606 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:36:26 Heat of formation + Delta-G solvation = -71.908797 kcal Electronic energy + Delta-G solvation = -20725.628842 eV Core-core repulsion = 17407.173638 eV Total energy + Delta-G solvation = -3318.455203 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23409 -40.50179 -39.82869 -37.79723 -36.56134 -34.97556 -34.04315 -31.94219 -30.34239 -28.36521 -26.70399 -25.65302 -23.82787 -23.36496 -22.20244 -21.41732 -20.39366 -18.70985 -18.52304 -17.83205 -17.40773 -16.97087 -16.66524 -16.32886 -16.25336 -16.08208 -15.75726 -15.26648 -14.93749 -14.80056 -14.51709 -14.47161 -13.98819 -13.61465 -13.43438 -13.26677 -13.06193 -12.84923 -12.60983 -12.41253 -12.27943 -12.00650 -11.84245 -11.60715 -11.27756 -11.01212 -10.68779 -10.61183 -10.08868 -9.87854 -9.63333 -4.93549 0.23473 0.45122 1.28709 1.55851 1.65730 1.90537 2.17436 2.77806 3.31570 3.40388 3.50326 3.61096 3.61398 3.79130 3.83056 3.89624 3.98677 4.05117 4.09110 4.26444 4.33959 4.38084 4.46775 4.54982 4.61738 4.67324 4.72385 4.79191 4.81991 4.85997 5.00861 5.03827 5.08466 5.16351 5.36826 5.37582 5.51429 5.53038 5.58954 6.01584 6.46556 6.57426 6.90454 7.28860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.084 4.084 3 Si 0.764 3.236 4 C -0.125 4.125 5 C -0.107 4.107 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.097 4.097 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.108 4.108 14 H 0.123 0.877 15 C -0.132 4.132 16 C 0.071 3.929 17 H 0.102 0.898 18 O -0.586 6.586 19 C -0.159 4.159 20 C -0.112 4.112 21 C -0.125 4.125 22 H 0.386 0.614 23 H 0.118 0.882 24 H -0.302 1.302 25 H -0.277 1.277 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.418 0.582 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.394 0.606 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -1.674 8.536 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.193 4.193 3 Si 0.669 3.331 4 C -0.125 4.125 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.136 4.136 9 C 0.297 3.703 10 O -0.461 6.461 11 N -0.370 5.370 12 C 0.010 3.990 13 C -0.126 4.126 14 H 0.141 0.859 15 C -0.170 4.170 16 C 0.012 3.988 17 H 0.120 0.880 18 O -0.394 6.394 19 C -0.196 4.196 20 C -0.129 4.129 21 C -0.143 4.143 22 H 0.235 0.765 23 H 0.136 0.864 24 H -0.230 1.230 25 H -0.203 1.203 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.256 0.744 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.159 0.841 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.223 -1.210 6.615 6.729 hybrid contribution -1.138 -0.131 1.046 1.551 sum -0.915 -1.341 7.661 7.832 Atomic orbital electron populations 1.86563 1.18460 1.80458 1.50139 1.25222 0.83476 1.12023 0.98587 0.93908 0.90629 0.72042 0.76558 1.20323 1.00222 0.95029 0.96971 1.21111 0.99333 0.94195 0.97922 1.21249 0.98061 1.00294 0.93850 1.19600 0.97386 0.93978 0.96199 1.20755 0.92667 1.02786 0.97420 1.21053 0.88168 0.77443 0.83598 1.90748 1.69730 1.59212 1.26419 1.45886 1.17649 1.56270 1.17160 1.21218 0.83182 0.97097 0.97541 1.22514 0.96779 0.98167 0.95152 0.85873 1.23110 0.95573 1.01396 0.96893 1.23485 0.81114 0.96143 0.98027 0.88031 1.86502 1.29351 1.85735 1.37858 1.23713 0.98138 0.97705 1.00090 1.21232 0.99190 0.94362 0.98158 1.21197 0.98556 1.00291 0.94212 0.76505 0.86405 1.22978 1.20307 0.85831 0.84973 0.85230 0.84968 0.74428 0.93086 0.92628 0.89732 0.90671 0.75554 0.90672 0.89218 0.84149 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.78 12.83 -148.98 -1.91 -4.69 16 2 C -0.08 -0.24 2.80 71.23 0.20 -0.04 16 3 Si 0.76 0.52 29.88 68.60 2.05 2.57 16 4 C -0.13 -0.48 5.35 -19.87 -0.11 -0.59 16 5 C -0.11 -0.52 9.69 22.27 0.22 -0.31 16 6 C -0.12 -0.39 9.70 22.27 0.22 -0.17 16 7 C -0.07 -0.11 4.37 -19.87 -0.09 -0.20 16 8 C -0.10 0.48 5.83 29.10 0.17 0.65 16 9 C 0.51 0.75 7.82 87.66 0.69 1.43 16 10 O -0.58 -7.21 16.03 -3.02 -0.05 -7.26 16 11 N -0.72 3.03 5.56 -463.05 -2.57 0.46 16 12 C 0.13 -0.16 5.51 86.38 0.48 0.31 16 13 C -0.11 0.66 3.76 -10.26 -0.04 0.62 16 14 H 0.12 -1.28 8.14 -2.39 -0.02 -1.30 16 15 C -0.13 0.33 7.47 31.12 0.23 0.56 16 16 C 0.07 -0.27 5.21 31.12 0.16 -0.10 16 17 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 18 O -0.59 -0.30 13.67 -148.98 -2.04 -2.34 16 19 C -0.16 0.89 7.47 31.12 0.23 1.13 16 20 C -0.11 -0.20 9.70 22.27 0.22 0.02 16 21 C -0.13 -0.29 8.67 22.27 0.19 -0.10 16 22 H 0.39 -0.36 8.70 -74.06 -0.64 -1.00 16 23 H 0.12 0.25 7.96 -2.38 -0.02 0.23 16 24 H -0.30 -2.41 7.11 99.48 0.71 -1.70 16 25 H -0.28 -0.91 7.01 99.48 0.70 -0.21 16 26 H 0.12 0.51 8.06 -2.91 -0.02 0.48 16 27 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 28 H 0.13 -1.29 8.09 -2.39 -0.02 -1.31 16 29 H 0.13 -1.38 8.08 -2.39 -0.02 -1.40 16 30 H 0.42 -4.78 8.47 -92.71 -0.79 -5.56 16 31 H 0.05 0.16 7.84 -2.39 -0.02 0.14 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.07 0.11 8.10 -2.39 -0.02 0.09 16 35 H 0.39 -3.08 9.12 -74.05 -0.68 -3.75 16 36 H 0.07 -0.13 7.90 -2.39 -0.02 -0.15 16 37 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 39 H 0.14 -0.17 4.85 -2.91 -0.01 -0.19 16 Total: 0.00 -23.18 329.43 -2.75 -25.93 By element: Atomic # 1 Polarization: -16.89 SS G_CDS: -1.00 Total: -17.89 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 2.77 Total: 3.22 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -2.57 Total: 0.46 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -4.00 Total: -14.28 kcal Atomic # 14 Polarization: 0.52 SS G_CDS: 2.05 Total: 2.57 kcal Total: -23.18 -2.75 -25.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.981 kcal (2) G-P(sol) polarization free energy of solvation -23.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds