Wall clock time and date at job start Sat Mar 6 2021 20:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37873 * 126.45301 * 2 1 4 4 C 1.46676 * 126.23694 * 0.25018 * 3 2 1 5 5 O 1.21698 * 119.99871 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00487 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00360 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47358 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.85249 * 43.79938 * 8 7 6 10 10 C 1.53775 * 113.61864 * 175.00276 * 8 7 6 11 11 C 1.53774 * 87.08376 * 139.98056 * 10 8 7 12 12 H 1.08998 * 113.61686 * 89.20065 * 11 10 8 13 13 O 1.42907 * 113.61334 * 220.01943 * 11 10 8 14 14 C 1.53775 * 87.08361 * 334.56588 * 11 10 8 15 15 N 1.37650 * 107.53366 * 180.26415 * 3 2 1 16 16 C 1.35539 * 108.64115 * 0.02562 * 15 3 2 17 17 C 1.50704 * 125.56134 * 179.97438 * 16 15 3 18 18 O 1.42898 * 109.46900 * 245.04135 * 17 16 15 19 19 Si 1.86297 * 109.47282 * 5.04171 * 17 16 15 20 20 C 1.35445 * 108.87398 * 359.97438 * 16 15 3 21 21 H 1.09004 * 109.46730 * 269.70326 * 1 2 3 22 22 H 1.08995 * 109.47255 * 29.70760 * 1 2 3 23 23 H 1.08997 * 109.47149 * 149.71323 * 1 2 3 24 24 H 0.96997 * 119.99473 * 359.97438 * 6 4 3 25 25 H 1.08994 * 109.47294 * 300.00159 * 7 6 4 26 26 H 1.09001 * 109.47200 * 60.00060 * 7 6 4 27 27 H 1.09000 * 113.61770 * 254.53173 * 10 8 7 28 28 H 1.09001 * 113.61468 * 25.34782 * 10 8 7 29 29 H 0.96698 * 113.99769 * 179.97438 * 13 11 10 30 30 H 1.08999 * 113.61566 * 270.88695 * 14 11 10 31 31 H 1.08999 * 113.61331 * 139.97843 * 14 11 10 32 32 H 0.96996 * 125.68432 * 179.97438 * 15 3 2 33 33 H 1.09001 * 109.46830 * 125.03851 * 17 16 15 34 34 H 0.96695 * 114.00084 * 60.00177 * 18 17 16 35 35 H 1.48506 * 110.00079 * 58.68072 * 19 17 16 36 36 H 1.48500 * 110.00349 * 179.97438 * 19 17 16 37 37 H 1.08001 * 126.07235 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.1090 0.0000 4 6 1.8898 2.5093 0.0052 5 8 0.7026 2.7766 0.0096 6 7 2.8035 3.5000 0.0050 7 6 2.3676 4.8986 0.0096 8 6 3.5930 5.8148 0.0078 9 1 4.3639 5.4892 -0.6906 10 6 3.2455 7.3081 -0.1104 11 6 4.3591 7.5680 0.9178 12 1 5.3401 7.7235 0.4690 13 8 4.0253 8.5680 1.8826 14 6 4.1276 6.1312 1.4146 15 7 3.6284 0.6627 -0.0061 16 6 3.6218 -0.6927 -0.0103 17 6 4.8435 -1.5751 -0.0180 18 8 4.8918 -2.3109 -1.2420 19 14 6.3719 -0.5209 0.1336 20 6 2.3380 -1.1246 -0.0065 21 1 -0.3633 -0.0053 1.0277 22 1 -0.3633 0.8925 -0.5093 23 1 -0.3633 -0.8874 -0.5183 24 1 3.7498 3.2869 0.0019 25 1 1.7665 5.0948 -0.8781 26 1 1.7714 5.0904 0.9017 27 1 3.4531 7.7282 -1.0945 28 1 2.2478 7.5543 0.2530 29 1 4.7217 8.7356 2.5322 30 1 3.3716 6.0559 2.1962 31 1 5.0475 5.6012 1.6616 32 1 4.4190 1.2245 -0.0078 33 1 4.7959 -2.2688 0.8214 34 1 4.9354 -1.7563 -2.0329 35 1 6.3188 0.2735 1.3872 36 1 7.5837 -1.3792 0.1278 37 1 2.0137 -2.1548 -0.0081 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_13940406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:03 Heat of formation + Delta-G solvation = -53.091890 kcal Electronic energy + Delta-G solvation = -20210.580801 eV Core-core repulsion = 16955.741790 eV Total energy + Delta-G solvation = -3254.839011 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.64949 -40.76845 -39.85590 -37.71545 -36.65438 -35.20622 -33.64378 -31.63576 -29.15577 -28.33174 -26.74473 -26.48177 -23.56059 -22.44938 -21.63067 -20.86061 -20.23671 -19.66555 -18.42998 -17.86593 -17.04485 -16.86265 -16.70565 -16.33032 -16.14166 -15.50082 -15.20655 -15.00599 -14.77247 -14.49368 -14.18330 -14.00154 -13.62303 -13.51495 -13.45565 -13.44124 -13.00273 -12.65461 -12.56784 -12.42778 -12.21188 -11.86428 -11.30736 -11.15113 -10.71076 -10.54324 -10.28482 -9.84189 -9.21310 -5.17301 0.25543 1.12954 1.45431 1.57741 1.80611 1.93348 2.06932 2.23640 3.29189 3.41541 3.46942 3.58436 3.69133 3.79730 3.83040 3.99659 4.11463 4.19130 4.27389 4.34994 4.41429 4.64844 4.69884 4.77211 4.80202 4.82635 4.83841 4.86677 4.99816 5.08637 5.13385 5.24171 5.34870 5.45472 5.61950 5.81916 6.27467 6.45873 6.70410 6.89228 7.05953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.092 4.092 3 C -0.061 4.061 4 C 0.586 3.414 5 O -0.564 6.564 6 N -0.714 5.714 7 C 0.134 3.866 8 C -0.109 4.109 9 H 0.128 0.872 10 C -0.129 4.129 11 C 0.072 3.928 12 H 0.104 0.896 13 O -0.586 6.586 14 C -0.163 4.163 15 N -0.517 5.517 16 C 0.030 3.970 17 C -0.049 4.049 18 O -0.548 6.548 19 Si 0.772 3.228 20 C -0.192 4.192 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.411 0.589 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.394 0.606 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.427 0.573 33 H 0.125 0.875 34 H 0.397 0.603 35 H -0.270 1.270 36 H -0.288 1.288 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 1.748 -2.001 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.174 4.174 4 C 0.374 3.626 5 O -0.444 6.444 6 N -0.366 5.366 7 C 0.011 3.989 8 C -0.127 4.127 9 H 0.146 0.854 10 C -0.167 4.167 11 C 0.013 3.987 12 H 0.122 0.878 13 O -0.395 6.395 14 C -0.201 4.201 15 N -0.119 5.119 16 C -0.087 4.087 17 C -0.160 4.160 18 O -0.355 6.355 19 Si 0.675 3.325 20 C -0.217 4.217 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.247 0.753 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.270 0.730 33 H 0.142 0.858 34 H 0.247 0.753 35 H -0.197 1.197 36 H -0.215 1.215 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.428 1.813 -1.472 7.786 hybrid contribution 0.477 -0.363 0.784 0.986 sum 7.904 1.450 -0.689 8.066 Atomic orbital electron populations 1.20320 0.89507 1.02776 1.02101 1.20220 0.96240 0.91549 1.02055 1.20020 0.84321 0.92918 1.20110 1.17183 0.85619 0.83677 0.76075 1.90832 1.17794 1.83781 1.51944 1.45712 1.09745 1.05965 1.75183 1.21335 0.96890 0.78898 1.01823 1.22550 0.97378 0.93975 0.98834 0.85431 1.23091 0.99373 0.94592 0.99648 1.23490 0.98742 0.86386 0.90074 0.87818 1.86505 1.47490 1.60067 1.45409 1.23754 1.02302 0.97489 0.96553 1.41855 1.06762 1.06249 1.57029 1.21014 0.97698 0.82897 1.07106 1.24856 1.01155 0.98971 0.90976 1.86536 1.96504 1.36848 1.15580 0.94423 0.73203 0.80623 0.84241 1.20763 0.91361 0.99005 1.10566 0.91735 0.91767 0.90675 0.75299 0.91601 0.92667 0.89390 0.90596 0.75603 0.90820 0.89285 0.73041 0.85828 0.75257 1.19667 1.21480 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.83 71.24 0.70 0.09 16 2 C -0.09 -0.57 6.21 -19.56 -0.12 -0.69 16 3 C -0.06 -0.21 7.06 40.35 0.28 0.08 16 4 C 0.59 3.25 7.79 86.45 0.67 3.92 16 5 O -0.56 -7.92 14.80 -4.34 -0.06 -7.99 16 6 N -0.71 1.76 5.55 -467.10 -2.59 -0.83 16 7 C 0.13 -0.20 5.51 86.38 0.48 0.28 16 8 C -0.11 0.76 3.75 -10.27 -0.04 0.72 16 9 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 10 C -0.13 0.45 7.47 31.12 0.23 0.68 16 11 C 0.07 -0.32 5.21 31.12 0.16 -0.15 16 12 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 13 O -0.59 -0.10 13.67 -148.98 -2.04 -2.14 16 14 C -0.16 0.96 7.46 31.12 0.23 1.19 16 15 N -0.52 2.03 5.47 -171.93 -0.94 1.09 16 16 C 0.03 -0.05 6.10 41.34 0.25 0.20 16 17 C -0.05 0.22 2.98 71.24 0.21 0.44 16 18 O -0.55 1.74 12.88 -148.98 -1.92 -0.17 16 19 Si 0.77 -6.43 30.98 68.60 2.12 -4.31 16 20 C -0.19 -0.62 10.66 22.01 0.23 -0.38 16 21 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 22 H 0.06 0.66 6.48 -2.39 -0.02 0.65 16 23 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.41 -4.05 7.60 -92.71 -0.70 -4.76 16 25 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.05 0.15 7.84 -2.39 -0.02 0.13 16 27 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.08 0.04 8.10 -2.39 -0.02 0.02 16 29 H 0.39 -3.13 9.12 -74.06 -0.68 -3.80 16 30 H 0.07 -0.11 7.90 -2.39 -0.02 -0.13 16 31 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.43 -4.83 6.00 -92.71 -0.56 -5.39 16 33 H 0.12 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H 0.40 -4.46 8.70 -74.06 -0.64 -5.10 16 35 H -0.27 1.28 7.11 99.48 0.71 1.99 16 36 H -0.29 0.07 7.11 99.48 0.71 0.77 16 37 H 0.15 0.35 8.06 -2.91 -0.02 0.32 16 Total: 0.00 -23.27 312.34 -3.54 -26.81 By element: Atomic # 1 Polarization: -17.41 SS G_CDS: -1.42 Total: -18.83 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.30 Total: 6.37 kcal Atomic # 7 Polarization: 3.79 SS G_CDS: -3.53 Total: 0.26 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -4.02 Total: -10.30 kcal Atomic # 14 Polarization: -6.43 SS G_CDS: 2.12 Total: -4.31 kcal Total: -23.27 -3.54 -26.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_13940406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.279 kcal (2) G-P(sol) polarization free energy of solvation -23.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds