Wall clock time and date at job start Sat Mar 6 2021 20:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46983 * 2 1 4 4 C 1.50697 * 109.47535 * 120.00145 * 2 1 3 5 5 C 1.38241 * 119.97098 * 245.02308 * 4 2 1 6 6 C 1.38289 * 120.10753 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05977 * 359.68484 * 6 5 4 8 8 C 1.38754 * 119.93889 * 0.58874 * 7 6 5 9 9 O 1.35897 * 120.05516 * 179.70405 * 8 7 6 10 10 C 1.42905 * 117.00093 * 359.72833 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99926 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99773 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00012 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47369 * 180.02562 * 16 15 13 18 18 H 1.09004 * 112.84965 * 316.19059 * 17 16 15 19 19 C 1.53780 * 113.61900 * 87.50210 * 17 16 15 20 20 C 1.53775 * 87.08109 * 139.98100 * 19 17 16 21 21 H 1.09003 * 113.61536 * 89.12085 * 20 19 17 22 22 O 1.42904 * 113.68772 * 220.00724 * 20 19 17 23 23 C 1.53779 * 87.08438 * 334.56924 * 20 19 17 24 24 C 1.38169 * 119.97175 * 65.00038 * 4 2 1 25 25 H 0.96696 * 114.00121 * 299.99536 * 1 2 3 26 26 H 1.09006 * 109.47214 * 240.00836 * 2 1 3 27 27 H 1.48493 * 110.00293 * 178.68384 * 3 2 1 28 28 H 1.48498 * 110.00005 * 300.00232 * 3 2 1 29 29 H 1.07994 * 119.94651 * 359.97438 * 5 4 2 30 30 H 1.08008 * 119.97238 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.02760 * 180.32268 * 7 6 5 32 32 H 1.09001 * 109.47103 * 300.00408 * 10 9 8 33 33 H 1.09004 * 109.47054 * 59.99912 * 10 9 8 34 34 H 1.09001 * 109.46832 * 299.99892 * 11 10 9 35 35 H 1.08992 * 109.47303 * 59.99596 * 11 10 9 36 36 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 37 37 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 38 38 H 0.97005 * 120.00611 * 0.02562 * 15 13 12 39 39 H 1.09001 * 109.47271 * 300.00468 * 16 15 13 40 40 H 1.09004 * 109.47041 * 60.00066 * 16 15 13 41 41 H 1.08996 * 113.61615 * 254.53265 * 19 17 16 42 42 H 1.09004 * 113.61075 * 25.43315 * 19 17 16 43 43 H 0.96699 * 114.00141 * 277.53250 * 22 20 19 44 44 H 1.08998 * 113.61295 * 270.88263 * 23 20 19 45 45 H 1.08996 * 113.61570 * 139.98069 * 23 20 19 46 46 H 1.08001 * 120.02344 * 0.04593 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6384 -0.0116 2.1910 6 6 3.1003 -0.6605 3.3214 7 6 2.8506 -2.0077 3.4965 8 6 2.1461 -2.7126 2.5310 9 8 1.9043 -4.0394 2.6979 10 6 2.4099 -4.6462 3.8889 11 6 2.0428 -6.1314 3.9000 12 6 2.5834 -6.7809 5.1754 13 6 2.2213 -8.2437 5.1866 14 8 1.5931 -8.7200 4.2650 15 7 2.5965 -9.0229 6.2203 16 6 2.2450 -10.4450 6.2310 17 6 2.7856 -11.0944 7.5065 18 1 3.8048 -10.7860 7.7393 19 6 1.8229 -10.9995 8.7019 20 6 2.2362 -12.4395 9.0485 21 1 3.1048 -12.4986 9.7044 22 8 1.1510 -13.2579 9.4897 23 6 2.5757 -12.6170 7.5591 24 6 1.6846 -2.0596 1.3976 25 1 -0.3933 0.4416 0.7650 26 1 1.7924 -0.5137 -0.8901 27 1 3.5345 1.7704 0.0321 28 1 1.5614 2.4679 -1.2084 29 1 2.8303 1.0429 2.0585 30 1 3.6528 -0.1125 4.0704 31 1 3.2071 -2.5129 4.3820 32 1 3.4943 -4.5400 3.9187 33 1 1.9729 -4.1570 4.7595 34 1 0.9584 -6.2379 3.8701 35 1 2.4799 -6.6202 3.0294 36 1 3.6678 -6.6744 5.2057 37 1 2.1458 -6.2919 6.0458 38 1 3.0993 -8.6421 6.9573 39 1 1.1606 -10.5515 6.2009 40 1 2.6824 -10.9339 5.3604 41 1 2.1259 -10.2663 9.4494 42 1 0.7762 -10.9032 8.4130 43 1 0.9329 -13.1508 10.4257 44 1 1.7349 -12.9629 6.9579 45 1 3.4865 -13.1896 7.3841 46 1 1.1326 -2.6051 0.6466 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_4549616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:25 Heat of formation + Delta-G solvation = -116.702517 kcal Electronic energy + Delta-G solvation = -25487.916986 eV Core-core repulsion = 21537.761951 eV Total energy + Delta-G solvation = -3950.155035 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31118 -41.01718 -40.11179 -39.17890 -37.30273 -36.63953 -35.03661 -34.89057 -32.45472 -31.29496 -29.62577 -27.66581 -26.77328 -26.69014 -23.89930 -23.64085 -22.95104 -21.87071 -21.51856 -20.42164 -19.21136 -18.64435 -17.95841 -17.81702 -17.49534 -17.16776 -17.00319 -16.81305 -16.64195 -16.27989 -16.13857 -15.44721 -15.32312 -15.26597 -14.85363 -14.62965 -14.47055 -14.19817 -14.16597 -13.60658 -13.46597 -13.31548 -13.23885 -13.05488 -12.73589 -12.62245 -12.43879 -12.32708 -12.24800 -12.01836 -11.87574 -11.62208 -11.59297 -11.30601 -11.03132 -10.70560 -10.49005 -10.14594 -9.92922 -9.24133 -4.99170 0.21856 0.41164 1.29492 1.59361 1.65634 1.90491 1.99459 2.37904 2.68737 3.28675 3.44794 3.50961 3.57090 3.66371 3.69107 3.80704 3.85390 3.87435 3.96913 3.98376 4.11615 4.17855 4.24636 4.25770 4.32727 4.35297 4.41102 4.41442 4.52564 4.61608 4.64781 4.69040 4.77155 4.79178 4.83309 4.98696 4.99420 5.00113 5.12694 5.15869 5.28893 5.33755 5.39125 5.45695 5.47763 5.75569 6.43208 6.51882 6.74556 6.88458 7.23283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.794 3.206 4 C -0.086 4.086 5 C -0.158 4.158 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.115 3.885 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.125 4.125 13 C 0.504 3.496 14 O -0.594 6.594 15 N -0.715 5.715 16 C 0.131 3.869 17 C -0.107 4.107 18 H 0.125 0.875 19 C -0.160 4.160 20 C 0.071 3.929 21 H 0.104 0.896 22 O -0.586 6.586 23 C -0.132 4.132 24 C -0.154 4.154 25 H 0.396 0.604 26 H 0.100 0.900 27 H -0.282 1.282 28 H -0.300 1.300 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.420 0.580 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.395 0.605 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 4.308 11.377 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.194 4.194 3 Si 0.699 3.301 4 C -0.086 4.086 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.070 3.930 9 O -0.255 6.255 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.165 4.165 13 C 0.293 3.707 14 O -0.475 6.475 15 N -0.368 5.368 16 C 0.007 3.993 17 C -0.126 4.126 18 H 0.143 0.857 19 C -0.197 4.197 20 C 0.013 3.987 21 H 0.121 0.879 22 O -0.395 6.395 23 C -0.170 4.170 24 C -0.173 4.173 25 H 0.245 0.755 26 H 0.118 0.882 27 H -0.209 1.209 28 H -0.229 1.229 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.245 0.755 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.712 3.884 9.047 11.382 hybrid contribution -0.046 -0.874 0.224 0.903 sum 5.666 3.010 9.271 11.275 Atomic orbital electron populations 1.86475 1.17350 1.82320 1.50432 1.25407 0.85303 1.11801 0.96853 0.93553 0.77727 0.74261 0.84593 1.20217 0.98223 0.93208 0.96999 1.21186 1.00944 1.00520 0.94910 1.21334 0.96840 0.93553 0.97237 1.21616 1.03831 0.96385 1.00545 1.19211 0.95751 0.83031 0.95007 1.86056 1.74943 1.20462 1.44022 1.22994 0.99950 0.92816 0.85827 1.21159 1.01882 0.92740 0.98340 1.21528 1.05399 0.89665 0.99873 1.21275 0.78095 0.90114 0.81256 1.90742 1.42172 1.76744 1.37852 1.45885 1.57672 1.09598 1.23637 1.21239 0.99256 0.80802 0.98003 1.22519 1.01095 0.95380 0.93604 0.85692 1.23720 0.99563 0.98162 0.98293 1.23487 0.89913 0.89728 0.95585 0.87864 1.86503 1.53433 1.66788 1.32767 1.23117 1.02379 0.95865 0.95686 1.20331 1.04499 0.94672 0.97790 0.75451 0.88237 1.20890 1.22881 0.83215 0.82114 0.82788 0.89801 0.89610 0.92325 0.92373 0.85225 0.85239 0.74258 0.93246 0.92606 0.89058 0.90801 0.75534 0.90780 0.89606 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.86 12.83 -148.98 -1.91 -3.77 16 2 C -0.08 -0.18 2.80 71.23 0.20 0.02 16 3 Si 0.79 -1.33 29.80 68.60 2.04 0.71 16 4 C -0.09 -0.24 5.35 -19.88 -0.11 -0.35 16 5 C -0.16 0.25 8.67 22.28 0.19 0.44 16 6 C -0.07 0.22 10.04 22.25 0.22 0.45 16 7 C -0.21 0.19 9.04 22.37 0.20 0.39 16 8 C 0.12 0.60 6.69 22.51 0.15 0.75 16 9 O -0.34 -2.21 10.14 -92.39 -0.94 -3.15 16 10 C 0.06 -0.13 4.74 71.98 0.34 0.21 16 11 C -0.10 -0.05 4.87 30.59 0.15 0.10 16 12 C -0.13 0.82 5.70 29.85 0.17 0.99 16 13 C 0.50 0.99 7.83 87.66 0.69 1.67 16 14 O -0.59 -8.22 15.98 -3.03 -0.05 -8.27 16 15 N -0.72 2.73 5.56 -463.06 -2.57 0.16 16 16 C 0.13 -0.07 5.51 86.38 0.48 0.41 16 17 C -0.11 0.62 3.75 -10.27 -0.04 0.59 16 18 H 0.13 -1.29 8.14 -2.38 -0.02 -1.31 16 19 C -0.16 0.84 7.47 31.12 0.23 1.08 16 20 C 0.07 -0.25 5.21 31.12 0.16 -0.09 16 21 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 22 O -0.59 -0.50 13.67 -148.98 -2.04 -2.54 16 23 C -0.13 0.28 7.47 31.12 0.23 0.51 16 24 C -0.15 -1.07 9.62 22.37 0.22 -0.86 16 25 H 0.40 -2.11 8.70 -74.06 -0.64 -2.76 16 26 H 0.10 0.43 7.96 -2.38 -0.02 0.41 16 27 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 28 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 29 H 0.15 -1.00 4.90 -2.91 -0.01 -1.01 16 30 H 0.16 -1.51 8.06 -2.91 -0.02 -1.54 16 31 H 0.15 -1.02 6.30 -2.91 -0.02 -1.04 16 32 H 0.08 -0.53 7.67 -2.39 -0.02 -0.55 16 33 H 0.09 -0.57 7.65 -2.38 -0.02 -0.58 16 34 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 35 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 36 H 0.13 -1.61 8.14 -2.39 -0.02 -1.63 16 37 H 0.13 -1.60 8.14 -2.38 -0.02 -1.62 16 38 H 0.42 -4.84 8.47 -92.70 -0.79 -5.62 16 39 H 0.05 0.20 7.84 -2.39 -0.02 0.18 16 40 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 41 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.07 -0.08 7.90 -2.38 -0.02 -0.10 16 43 H 0.39 -2.97 9.12 -74.06 -0.68 -3.65 16 44 H 0.07 0.15 8.10 -2.39 -0.02 0.14 16 45 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -29.45 380.88 -3.03 -32.48 By element: Atomic # 1 Polarization: -20.86 SS G_CDS: -1.06 Total: -21.92 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 3.49 Total: 6.29 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -2.57 Total: 0.16 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -4.93 Total: -17.73 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.04 Total: 0.71 kcal Total: -29.45 -3.03 -32.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_4549616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.224 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds