Wall clock time and date at job start Sat Mar 6 2021 20:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36546 * 126.64469 * 2 1 4 4 C 1.46652 * 125.98961 * 0.02562 * 3 2 1 5 5 O 1.21698 * 119.99926 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00350 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47041 * 180.02562 * 7 6 4 9 9 H 1.09008 * 112.84923 * 314.66561 * 8 7 6 10 10 C 1.53772 * 113.61539 * 85.86331 * 8 7 6 11 11 C 1.53958 * 87.02031 * 139.94832 * 10 8 7 12 12 H 1.09004 * 113.61032 * 89.19693 * 11 10 8 13 13 O 1.42894 * 113.67236 * 220.06943 * 11 10 8 14 14 C 1.53778 * 87.11194 * 334.64095 * 11 10 8 15 15 O 1.34914 * 108.02267 * 179.80995 * 3 2 1 16 16 C 1.33929 * 109.38760 * 0.37772 * 15 3 2 17 17 C 1.50693 * 125.62014 * 179.88434 * 16 15 3 18 18 O 1.42900 * 109.47523 * 269.69093 * 17 16 15 19 19 C 1.35892 * 117.00484 * 179.97438 * 18 17 16 20 20 C 1.38732 * 120.05920 * 180.02562 * 19 18 17 21 21 C 1.38149 * 119.94758 * 179.97438 * 20 19 18 22 22 C 1.38269 * 120.05054 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.93900 * 179.97438 * 22 21 20 24 24 O 1.42896 * 109.47341 * 300.00123 * 23 22 21 25 25 Si 1.86300 * 109.46849 * 180.02562 * 23 22 21 26 26 C 1.38264 * 120.11486 * 0.27666 * 22 21 20 27 27 C 1.38143 * 120.05501 * 359.44957 * 26 22 21 28 28 C 1.35135 * 108.76530 * 359.62282 * 16 15 3 29 29 H 1.09001 * 109.47083 * 269.98179 * 1 2 3 30 30 H 1.08997 * 109.46775 * 29.97613 * 1 2 3 31 31 H 1.08995 * 109.47006 * 149.97733 * 1 2 3 32 32 H 0.97007 * 120.00098 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47298 * 300.00158 * 7 6 4 34 34 H 1.09000 * 109.46770 * 60.00827 * 7 6 4 35 35 H 1.08994 * 113.61958 * 254.52681 * 10 8 7 36 36 H 1.09003 * 113.61410 * 25.43563 * 10 8 7 37 37 H 0.96707 * 113.99714 * 277.56468 * 13 11 10 38 38 H 1.08999 * 113.61417 * 270.81338 * 14 11 10 39 39 H 1.08998 * 113.69636 * 139.91549 * 14 11 10 40 40 H 1.09008 * 109.47376 * 149.69338 * 17 16 15 41 41 H 1.08998 * 109.46915 * 29.69263 * 17 16 15 42 42 H 1.08000 * 120.02660 * 359.96129 * 20 19 18 43 43 H 1.07992 * 119.97601 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.46989 * 60.00454 * 23 22 21 45 45 H 0.96693 * 114.00306 * 299.99773 * 24 23 22 46 46 H 1.48506 * 110.00048 * 58.68772 * 25 23 22 47 47 H 1.48502 * 109.99996 * 180.02562 * 25 23 22 48 48 H 1.08003 * 119.97236 * 179.73093 * 26 22 21 49 49 H 1.08000 * 120.02735 * 180.28019 * 27 26 22 50 50 H 1.08000 * 126.44693 * 180.26742 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8843 2.4953 0.0005 5 8 0.6968 2.7614 0.0006 6 7 2.7971 3.4868 0.0010 7 6 2.3598 4.8851 0.0010 8 6 3.5844 5.8024 0.0009 9 1 4.3466 5.4910 0.7153 10 6 4.1383 6.0903 -1.4044 11 6 4.3606 7.5388 -0.9325 12 1 5.3357 7.7039 -0.4742 13 8 4.0384 8.5198 -1.9202 14 6 3.2342 7.2974 0.0862 15 8 3.6005 0.6648 0.0043 16 6 3.6184 -0.6744 -0.0014 17 6 4.8550 -1.5356 -0.0016 18 8 5.2456 -1.8081 -1.3489 19 6 6.3513 -2.5776 -1.5272 20 6 6.7874 -2.8811 -2.8088 21 6 7.9122 -3.6632 -2.9874 22 6 8.6028 -4.1437 -1.8901 23 6 9.8291 -4.9970 -2.0878 24 8 9.4777 -6.1740 -2.8181 25 14 10.5231 -5.4808 -0.4280 26 6 8.1666 -3.8478 -0.6119 27 6 7.0458 -3.0615 -0.4280 28 6 2.3449 -1.1262 -0.0009 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 3.7437 3.2747 0.0013 33 1 1.7613 5.0786 -0.8892 34 1 1.7607 5.0784 0.8908 35 1 5.0619 5.5563 -1.6276 36 1 3.3933 5.9981 -2.1947 37 1 4.7431 8.6761 -2.5639 38 1 2.2415 7.5357 -0.2957 39 1 3.4276 7.7359 1.0652 40 1 4.6448 -2.4736 0.5124 41 1 5.6619 -1.0128 0.5119 42 1 6.2480 -2.5066 -3.6661 43 1 8.2518 -3.9001 -3.9847 44 1 10.5777 -4.4337 -2.6449 45 1 8.8143 -6.7249 -2.3806 46 1 9.5008 -6.2223 0.3534 47 1 11.7333 -6.3222 -0.6092 48 1 8.7053 -4.2279 0.2436 49 1 6.7081 -2.8269 0.5707 50 1 2.0306 -2.1595 -0.0006 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:32 Heat of formation + Delta-G solvation = -83.335254 kcal Electronic energy + Delta-G solvation = -32515.086864 eV Core-core repulsion = 27863.018129 eV Total energy + Delta-G solvation = -4652.068735 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.95387 -41.30374 -40.96719 -40.03461 -39.25478 -37.30730 -36.73856 -35.52920 -34.87971 -33.22797 -32.06615 -31.54631 -29.75795 -28.83693 -27.54910 -26.72843 -26.19470 -24.21863 -23.55358 -22.79733 -22.41062 -22.23931 -21.09297 -20.42750 -19.47339 -19.33519 -18.47763 -18.34241 -17.58906 -17.39650 -17.29955 -16.88599 -16.63853 -16.50254 -16.18499 -16.12807 -15.95680 -15.67090 -15.38893 -15.00870 -14.79971 -14.66320 -14.57984 -14.38274 -14.22580 -14.12412 -13.81780 -13.61101 -13.58070 -13.53074 -13.45718 -13.40876 -12.85580 -12.67298 -12.46878 -12.29356 -12.10163 -12.06496 -11.89772 -11.62286 -11.38666 -11.30945 -10.82832 -10.73295 -10.59050 -10.38319 -10.02508 -9.72632 -9.23242 -4.90821 -0.28321 0.28241 0.32126 0.95197 1.32853 1.34139 1.61228 1.92233 1.96160 1.98676 2.36990 2.66086 3.25908 3.28432 3.44772 3.45702 3.55723 3.62024 3.68953 3.72291 3.78734 3.80951 3.95145 3.96937 4.03068 4.08381 4.17727 4.27725 4.31413 4.32262 4.43148 4.46680 4.55963 4.57303 4.62349 4.70185 4.71416 4.74654 4.78201 4.81070 4.94817 4.96342 4.98805 5.03628 5.09474 5.16989 5.18801 5.26963 5.33185 5.41707 5.50908 5.65310 5.70516 6.28361 6.29405 6.51136 6.87423 6.88328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.093 4.093 4 C 0.599 3.401 5 O -0.548 6.548 6 N -0.705 5.705 7 C 0.132 3.868 8 C -0.111 4.111 9 H 0.121 0.879 10 C -0.164 4.164 11 C 0.073 3.927 12 H 0.102 0.898 13 O -0.584 6.584 14 C -0.126 4.126 15 O -0.159 6.159 16 C 0.012 3.988 17 C 0.136 3.864 18 O -0.327 6.327 19 C 0.125 3.875 20 C -0.163 4.163 21 C -0.061 4.061 22 C -0.158 4.158 23 C -0.080 4.080 24 O -0.551 6.551 25 Si 0.767 3.233 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.188 4.188 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.386 0.614 46 H -0.280 1.280 47 H -0.308 1.308 48 H 0.150 0.850 49 H 0.161 0.839 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -0.092 4.206 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.146 4.146 4 C 0.386 3.614 5 O -0.429 6.429 6 N -0.356 5.356 7 C 0.009 3.991 8 C -0.130 4.130 9 H 0.139 0.861 10 C -0.201 4.201 11 C 0.014 3.986 12 H 0.120 0.880 13 O -0.393 6.393 14 C -0.164 4.164 15 O -0.055 6.055 16 C -0.040 4.040 17 C 0.062 3.938 18 O -0.242 6.242 19 C 0.081 3.919 20 C -0.182 4.182 21 C -0.079 4.079 22 C -0.158 4.158 23 C -0.189 4.189 24 O -0.359 6.359 25 Si 0.673 3.327 26 C -0.094 4.094 27 C -0.219 4.219 28 C -0.207 4.207 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.235 0.765 46 H -0.206 1.206 47 H -0.237 1.237 48 H 0.167 0.833 49 H 0.178 0.822 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.906 0.062 4.518 6.669 hybrid contribution -0.145 -0.982 -0.988 1.400 sum 4.761 -0.920 3.529 5.998 Atomic orbital electron populations 1.20452 0.87531 1.03772 1.03410 1.20977 0.98420 0.91380 0.99128 1.21816 0.81774 0.94774 1.16188 1.16635 0.85586 0.82405 0.76733 1.90863 1.16986 1.82820 1.52184 1.45817 1.10215 1.06029 1.73553 1.21431 0.96983 0.78441 1.02240 1.22533 0.97267 0.94230 0.98937 0.86086 1.23779 1.02193 0.97588 0.96578 1.23492 0.98749 0.86572 0.89757 0.87993 1.86496 1.47040 1.61269 1.44466 1.23076 0.99406 0.94212 0.99682 1.83953 1.27930 1.22561 1.71064 1.22418 0.96966 0.80289 1.04324 1.21261 0.91723 0.98107 0.82715 1.86107 1.42341 1.66470 1.29251 1.19091 0.86496 0.91683 0.94675 1.20628 0.99120 1.02988 0.95424 1.20919 0.93214 0.94262 0.99498 1.20271 0.99310 1.02482 0.93770 1.25192 0.97601 0.86976 1.09106 1.86567 1.63836 1.36095 1.49423 0.94175 0.76618 0.86781 0.75148 1.21049 0.95415 0.96449 0.96508 1.21483 0.98419 1.03073 0.98963 1.21887 0.90968 1.01177 1.06656 0.90051 0.91276 0.89491 0.74716 0.92063 0.91092 0.89719 0.90549 0.75560 0.90209 0.89304 0.85334 0.87519 0.85126 0.84856 0.86010 0.76520 1.20624 1.23689 0.83268 0.82200 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.35 9.82 71.24 0.70 0.35 16 2 C -0.10 -0.48 6.20 -19.74 -0.12 -0.60 16 3 C -0.09 -0.57 7.13 24.07 0.17 -0.40 16 4 C 0.60 4.50 7.79 86.44 0.67 5.17 16 5 O -0.55 -7.48 14.74 -4.34 -0.06 -7.54 16 6 N -0.71 -0.82 5.55 -467.10 -2.59 -3.41 16 7 C 0.13 0.03 5.50 86.38 0.48 0.51 16 8 C -0.11 0.50 3.75 -10.27 -0.04 0.46 16 9 H 0.12 -0.98 8.14 -2.38 -0.02 -1.00 16 10 C -0.16 0.58 7.48 31.18 0.23 0.81 16 11 C 0.07 -0.21 5.21 31.18 0.16 -0.04 16 12 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 13 O -0.58 -0.65 13.67 -148.98 -2.04 -2.68 16 14 C -0.13 0.28 7.48 31.12 0.23 0.52 16 15 O -0.16 -0.49 10.40 -5.02 -0.05 -0.54 16 16 C 0.01 0.00 6.94 24.97 0.17 0.17 16 17 C 0.14 -0.74 5.27 71.23 0.38 -0.37 16 18 O -0.33 -0.17 10.12 -92.34 -0.93 -1.10 16 19 C 0.13 -0.04 6.69 22.51 0.15 0.11 16 20 C -0.16 -0.18 9.99 22.37 0.22 0.04 16 21 C -0.06 -0.01 9.60 22.26 0.21 0.20 16 22 C -0.16 0.27 5.39 -19.85 -0.11 0.17 16 23 C -0.08 0.16 2.82 71.24 0.20 0.36 16 24 O -0.55 -0.89 12.76 -148.98 -1.90 -2.80 16 25 Si 0.77 -2.87 29.78 68.60 2.04 -0.83 16 26 C -0.08 0.33 8.66 22.25 0.19 0.53 16 27 C -0.20 0.92 9.04 22.37 0.20 1.12 16 28 C -0.19 -0.12 10.73 22.07 0.24 0.12 16 29 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.55 6.44 -2.39 -0.02 0.54 16 31 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.42 -1.36 8.23 -92.70 -0.76 -2.12 16 33 H 0.06 0.21 7.87 -2.39 -0.02 0.19 16 34 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.08 0.01 7.92 -2.39 -0.02 -0.01 16 37 H 0.39 -2.75 9.12 -74.05 -0.68 -3.43 16 38 H 0.08 0.08 8.10 -2.39 -0.02 0.06 16 39 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.13 -1.41 7.66 -2.38 -0.02 -1.43 16 41 H 0.11 -1.00 7.66 -2.39 -0.02 -1.02 16 42 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.12 -0.39 7.96 -2.39 -0.02 -0.40 16 45 H 0.39 -1.52 8.70 -74.06 -0.64 -2.17 16 46 H -0.28 0.15 7.11 99.48 0.71 0.86 16 47 H -0.31 -1.50 7.11 99.48 0.71 -0.79 16 48 H 0.15 -1.30 4.87 -2.91 -0.01 -1.31 16 49 H 0.16 -1.71 6.30 -2.91 -0.02 -1.73 16 50 H 0.18 -0.82 8.06 -2.91 -0.02 -0.85 16 Total: 0.00 -23.44 418.71 -2.23 -25.67 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -1.04 Total: -16.00 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.35 Total: 9.23 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.59 Total: -3.41 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -4.99 Total: -14.67 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.04 Total: -0.83 kcal Total: -23.44 -2.23 -25.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.667 kcal (2) G-P(sol) polarization free energy of solvation -23.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds