Wall clock time and date at job start Sat Mar 6 2021 20:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35992 * 116.99799 * 2 1 4 4 C 1.39157 * 120.07619 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.06722 * 359.97438 * 4 3 2 6 6 C 1.42906 * 117.00010 * 179.72778 * 5 4 3 7 7 C 1.50694 * 109.47292 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00385 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99926 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00085 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47293 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.84975 * 43.80078 * 11 10 9 13 13 C 1.53777 * 113.61503 * 174.99786 * 11 10 9 14 14 C 1.53784 * 87.08025 * 139.98214 * 13 11 10 15 15 H 1.08994 * 113.61390 * 89.19905 * 14 13 11 16 16 O 1.42904 * 113.61261 * 220.02103 * 14 13 11 17 17 C 1.53783 * 87.08237 * 334.56838 * 14 13 11 18 18 C 1.38564 * 119.85928 * 179.72450 * 4 3 2 19 19 C 1.38242 * 119.99394 * 0.27154 * 18 4 3 20 20 N 1.48003 * 119.92391 * 180.02562 * 19 18 4 21 21 O 1.21808 * 120.00130 * 0.02562 * 20 19 18 22 22 O 1.21803 * 120.00433 * 179.97438 * 20 19 18 23 23 C 1.38247 * 120.15106 * 0.02562 * 19 18 4 24 24 C 1.50702 * 119.93106 * 179.97438 * 23 19 18 25 25 O 1.42899 * 109.47255 * 74.99281 * 24 23 19 26 26 Si 1.86299 * 109.47417 * 195.00146 * 24 23 19 27 27 C 1.38242 * 120.14549 * 359.97276 * 23 19 18 28 28 H 1.08999 * 109.47488 * 300.00325 * 1 2 3 29 29 H 1.09001 * 109.46939 * 60.00933 * 1 2 3 30 30 H 1.08999 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46864 * 300.00327 * 6 5 4 32 32 H 1.08999 * 109.46969 * 59.99708 * 6 5 4 33 33 H 0.96995 * 119.99933 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.46798 * 299.99959 * 10 9 7 35 35 H 1.08999 * 109.47172 * 60.00039 * 10 9 7 36 36 H 1.08994 * 113.61741 * 254.52948 * 13 11 10 37 37 H 1.08996 * 113.61286 * 25.43575 * 13 11 10 38 38 H 0.96705 * 113.99570 * 179.97438 * 16 14 13 39 39 H 1.09001 * 113.61577 * 270.88481 * 17 14 13 40 40 H 1.08995 * 113.61904 * 139.97582 * 17 14 13 41 41 H 1.07995 * 120.00066 * 180.25369 * 18 4 3 42 42 H 1.09006 * 109.46488 * 314.99672 * 24 23 19 43 43 H 0.96702 * 113.99228 * 60.00764 * 25 24 23 44 44 H 1.48496 * 110.00007 * 58.67332 * 26 24 23 45 45 H 1.48499 * 110.00219 * 179.97438 * 26 24 23 46 46 H 1.08004 * 120.00330 * 180.02562 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0016 6 6 5.6003 0.3007 -0.0040 7 6 6.2519 -1.0580 -0.0012 8 8 5.5671 -2.0590 0.0044 9 7 7.5957 -1.1610 -0.0061 10 6 8.2292 -2.4820 -0.0029 11 6 9.7504 -2.3182 -0.0089 12 1 10.0960 -1.5491 0.6819 13 6 10.5136 -3.6472 0.1167 14 6 11.5015 -3.0873 -0.9203 15 1 12.3276 -2.5294 -0.4795 16 8 11.9341 -4.0545 -1.8792 17 6 10.3513 -2.1969 -1.4193 18 6 4.0602 2.5234 -0.0052 19 6 3.3028 3.6799 -0.0059 20 7 3.9713 5.0003 -0.0126 21 8 5.1875 5.0672 -0.0181 22 8 3.3053 6.0202 -0.0136 23 6 1.9223 3.6058 -0.0002 24 6 1.1014 4.8696 -0.0003 25 8 1.1293 5.4556 -1.3033 26 14 -0.6578 4.4676 0.4624 27 6 1.2932 2.3748 0.0056 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 5.9033 0.8477 -0.8968 32 1 5.9097 0.8534 0.8831 33 1 8.1434 -0.3605 -0.0110 34 1 7.9265 -3.0279 0.8907 35 1 7.9195 -3.0356 -0.8892 36 1 10.9560 -3.8055 1.1002 37 1 9.9498 -4.5097 -0.2386 38 1 12.5554 -3.7081 -2.5344 39 1 9.7431 -2.6629 -2.1946 40 1 10.6625 -1.1843 -1.6757 41 1 5.1385 2.5841 -0.0090 42 1 1.5159 5.5720 0.7230 43 1 0.7746 4.8850 -1.9987 44 1 -0.6972 3.8284 1.8022 45 1 -1.4776 5.7058 0.4665 46 1 0.2145 2.3196 0.0096 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_4549636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:40 Heat of formation + Delta-G solvation = -123.498277 kcal Electronic energy + Delta-G solvation = -33453.648354 eV Core-core repulsion = 28509.037624 eV Total energy + Delta-G solvation = -4944.610729 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.144 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.40610 -42.12123 -41.15440 -40.29500 -39.53917 -39.18371 -37.74499 -37.14160 -36.62018 -35.12511 -32.68665 -32.58074 -30.66581 -28.89379 -28.09289 -27.86639 -26.71553 -25.78581 -24.00473 -23.37142 -23.10252 -21.91528 -20.78117 -20.50533 -19.86234 -19.51170 -18.87905 -18.69870 -18.58321 -18.18136 -17.78888 -17.60041 -17.39411 -16.92075 -16.87631 -16.40875 -16.35227 -16.08989 -15.90914 -15.70000 -15.23680 -14.96562 -14.83512 -14.62745 -14.38420 -13.97534 -13.88660 -13.57506 -13.46628 -13.44147 -13.03294 -12.67721 -12.66900 -12.49903 -12.45856 -12.42878 -12.33655 -12.27590 -12.21629 -11.87516 -11.78568 -11.30990 -11.14063 -10.71313 -10.53708 -10.46423 -10.25574 -9.49769 -5.13690 -1.36959 -0.44001 0.15781 0.29999 1.12715 1.23060 1.36665 1.57175 1.89188 1.89416 1.93636 2.32797 2.97575 3.16441 3.26330 3.28773 3.40237 3.46701 3.54327 3.55956 3.64167 3.80735 3.87326 3.93294 3.93388 3.99301 4.05448 4.10864 4.19800 4.22281 4.33693 4.38837 4.41230 4.54596 4.62610 4.72875 4.76425 4.80352 4.81585 4.83016 4.99815 5.11574 5.23984 5.25159 5.44180 5.57684 6.05618 6.36359 6.46319 6.71426 6.88929 7.04841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.100 3.900 5 O -0.291 6.291 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.570 6.570 9 N -0.706 5.706 10 C 0.134 3.866 11 C -0.108 4.108 12 H 0.126 0.874 13 C -0.131 4.131 14 C 0.070 3.930 15 H 0.102 0.898 16 O -0.586 6.586 17 C -0.161 4.161 18 C -0.110 4.110 19 C -0.046 4.046 20 N 0.035 4.965 21 O -0.186 6.186 22 O -0.166 6.166 23 C -0.040 4.040 24 C -0.091 4.091 25 O -0.536 6.536 26 Si 0.787 3.213 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.422 0.578 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.184 0.816 42 H 0.115 0.885 43 H 0.393 0.607 44 H -0.272 1.272 45 H -0.291 1.291 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -1.751 -1.077 2.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.122 3.878 4 C 0.053 3.947 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.299 3.701 8 O -0.448 6.448 9 N -0.361 5.361 10 C 0.010 3.990 11 C -0.127 4.127 12 H 0.144 0.856 13 C -0.169 4.169 14 C 0.012 3.988 15 H 0.120 0.880 16 O -0.395 6.395 17 C -0.198 4.198 18 C -0.129 4.129 19 C -0.130 4.130 20 N 0.548 4.452 21 O -0.397 6.397 22 O -0.379 6.379 23 C -0.042 4.042 24 C -0.199 4.199 25 O -0.343 6.343 26 Si 0.689 3.311 27 C -0.181 4.181 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.201 0.799 42 H 0.132 0.868 43 H 0.242 0.758 44 H -0.198 1.198 45 H -0.218 1.218 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.802 -3.272 0.155 3.739 hybrid contribution 1.569 1.455 -0.102 2.142 sum -0.234 -1.817 0.053 1.833 Atomic orbital electron populations 1.23813 0.74672 1.07062 1.04208 1.86335 1.24881 1.24523 1.86181 1.18685 0.89157 0.86402 0.93559 1.17975 0.88841 0.85100 1.02822 1.86305 1.18488 1.26874 1.88734 1.22902 0.78793 0.95929 1.07330 1.20360 0.83090 0.90485 0.76142 1.90786 1.64040 1.39936 1.50036 1.45662 1.05139 1.10675 1.74610 1.21318 0.92023 0.83921 1.01696 1.22528 0.91844 0.99383 0.98900 0.85638 1.23107 0.96965 0.97252 0.99536 1.23491 0.95097 0.90060 0.90188 0.88021 1.86501 1.67461 1.40167 1.45325 1.23736 0.98178 1.01486 0.96430 1.20901 1.03015 0.88128 1.00889 1.20552 0.92763 0.81909 1.17800 1.43722 1.00832 1.03442 0.97171 1.94501 0.96508 1.94120 1.54534 1.94579 1.64414 1.25396 1.53546 1.20226 0.91067 0.97665 0.95244 1.25764 1.10566 0.92787 0.90799 1.86670 1.87012 1.44610 1.15997 0.94387 0.71811 0.82169 0.82740 1.21086 1.01783 0.88072 1.07177 0.90154 0.88800 0.86124 0.85325 0.85374 0.74002 0.91967 0.92602 0.89590 0.90531 0.75560 0.90584 0.89205 0.79932 0.86803 0.75794 1.19786 1.21796 0.78935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.31 0.08 10.28 -79.59 -0.82 -0.74 16 3 C 0.17 -0.19 6.70 22.57 0.15 -0.04 16 4 C 0.10 0.05 6.70 22.57 0.15 0.21 16 5 O -0.29 -1.00 9.46 -67.08 -0.63 -1.63 16 6 C 0.03 -0.12 5.22 71.23 0.37 0.25 16 7 C 0.51 0.94 7.91 87.65 0.69 1.63 16 8 O -0.57 -7.74 16.50 16.01 0.26 -7.48 16 9 N -0.71 3.48 5.56 -463.06 -2.57 0.91 16 10 C 0.13 -0.29 5.51 86.38 0.48 0.18 16 11 C -0.11 0.75 3.75 -10.27 -0.04 0.71 16 12 H 0.13 -1.41 8.14 -2.39 -0.02 -1.43 16 13 C -0.13 0.41 7.47 31.12 0.23 0.64 16 14 C 0.07 -0.28 5.21 31.12 0.16 -0.12 16 15 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 16 O -0.59 -0.20 13.67 -148.98 -2.04 -2.24 16 17 C -0.16 0.96 7.46 31.12 0.23 1.20 16 18 C -0.11 0.08 8.54 22.35 0.19 0.27 16 19 C -0.05 -0.14 6.85 36.38 0.25 0.10 16 20 N 0.04 0.33 4.45 -46.46 -0.21 0.12 16 21 O -0.19 -1.92 18.44 18.88 0.35 -1.57 16 22 O -0.17 -2.09 14.62 25.10 0.37 -1.73 16 23 C -0.04 0.03 5.26 -19.86 -0.10 -0.08 16 24 C -0.09 0.01 1.74 71.24 0.12 0.13 16 25 O -0.54 -0.53 11.79 -129.61 -1.53 -2.06 16 26 Si 0.79 -4.25 29.91 68.60 2.05 -2.20 16 27 C -0.16 0.87 7.65 22.35 0.17 1.04 16 28 H 0.08 -1.05 7.65 -2.39 -0.02 -1.07 16 29 H 0.09 -1.42 7.68 -2.39 -0.02 -1.44 16 30 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 31 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 32 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 33 H 0.42 -5.30 8.47 -92.71 -0.79 -6.08 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 0.11 7.84 -2.39 -0.02 0.09 16 36 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.08 0.05 8.10 -2.39 -0.02 0.03 16 38 H 0.39 -3.07 9.12 -74.05 -0.68 -3.75 16 39 H 0.08 -0.16 7.90 -2.39 -0.02 -0.18 16 40 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.18 -0.98 5.85 -2.91 -0.02 -1.00 16 42 H 0.11 0.54 6.07 -2.38 -0.01 0.53 16 43 H 0.39 -3.53 8.70 -74.06 -0.64 -4.18 16 44 H -0.27 0.55 7.11 99.48 0.71 1.26 16 45 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 46 H 0.19 -2.44 3.36 -2.91 -0.01 -2.45 16 Total: 0.00 -35.67 389.60 -1.57 -37.24 By element: Atomic # 1 Polarization: -24.94 SS G_CDS: -0.98 Total: -25.92 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.17 Total: 7.29 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -2.78 Total: 1.03 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -4.04 Total: -17.44 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.05 Total: -2.20 kcal Total: -35.67 -1.57 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_4549636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.254 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds