Wall clock time and date at job start Sat Mar 6 2021 20:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 117.00129 * 2 1 4 4 C 1.39149 * 120.07499 * 179.97438 * 3 2 1 5 5 O 1.35994 * 120.07341 * 0.02562 * 4 3 2 6 6 C 1.42904 * 117.00295 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47018 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00310 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00170 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47007 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.84621 * 43.80816 * 11 10 9 13 13 C 1.53777 * 113.61215 * 175.00525 * 11 10 9 14 14 C 1.53776 * 87.08348 * 139.97985 * 13 11 10 15 15 H 1.09004 * 113.61417 * 89.11127 * 14 13 11 16 16 O 1.42900 * 113.61635 * 219.93310 * 14 13 11 17 17 C 1.53780 * 87.08085 * 334.56695 * 14 13 11 18 18 C 1.38569 * 119.85403 * 180.02562 * 4 3 2 19 19 C 1.38239 * 120.00051 * 359.72821 * 18 4 3 20 20 C 1.38256 * 120.14381 * 0.55150 * 19 18 4 21 21 C 1.50693 * 119.92431 * 179.72611 * 20 19 18 22 22 O 1.42907 * 109.47661 * 119.72549 * 21 20 19 23 23 Si 1.86298 * 109.47618 * 359.72239 * 21 20 19 24 24 C 1.38240 * 120.14513 * 359.44463 * 20 19 18 25 25 H 1.09007 * 109.46714 * 299.99241 * 1 2 3 26 26 H 1.09000 * 109.47651 * 59.99518 * 1 2 3 27 27 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46706 * 299.99750 * 6 5 4 29 29 H 1.08996 * 109.47140 * 59.99827 * 6 5 4 30 30 H 0.97003 * 119.99722 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.47414 * 300.00475 * 10 9 7 32 32 H 1.09006 * 109.46690 * 60.00840 * 10 9 7 33 33 H 1.09006 * 113.61438 * 254.52949 * 13 11 10 34 34 H 1.08996 * 113.61813 * 25.43279 * 13 11 10 35 35 H 0.96707 * 113.99746 * 180.02562 * 16 14 13 36 36 H 1.08996 * 113.61516 * 270.88375 * 17 14 13 37 37 H 1.09000 * 113.61862 * 139.98009 * 17 14 13 38 38 H 1.07999 * 119.99937 * 179.97438 * 18 4 3 39 39 H 1.08001 * 119.92844 * 180.27182 * 19 18 4 40 40 H 1.09000 * 109.46936 * 239.72172 * 21 20 19 41 41 H 0.96697 * 114.00527 * 179.97438 * 22 21 20 42 42 H 1.48506 * 109.99834 * 298.68714 * 23 21 20 43 43 H 1.48502 * 110.00011 * 59.99978 * 23 21 20 44 44 H 1.08011 * 119.99834 * 180.25547 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6004 0.3006 0.0005 7 6 6.2518 -1.0582 0.0012 8 8 5.5669 -2.0592 0.0021 9 7 7.5957 -1.1613 0.0008 10 6 8.2290 -2.4823 0.0020 11 6 9.7503 -2.3184 0.0018 12 1 10.0934 -1.5518 0.6965 13 6 10.5130 -3.6480 0.1257 14 6 11.5046 -3.0847 -0.9059 15 1 12.3284 -2.5271 -0.4604 16 8 11.9421 -4.0492 -1.8653 17 6 10.3562 -2.1926 -1.4060 18 6 4.0603 2.5234 0.0011 19 6 3.3030 3.6798 -0.0046 20 6 1.9224 3.6057 0.0007 21 6 1.1017 4.8696 0.0007 22 8 0.2776 4.9026 -1.1664 23 14 2.2365 6.3471 0.0015 24 6 1.2933 2.3748 0.0001 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 5.9065 0.8504 -0.8895 29 1 5.9066 0.8504 0.8905 30 1 8.1435 -0.3607 0.0004 31 1 7.9231 -3.0311 0.8926 32 1 7.9225 -3.0329 -0.8875 33 1 10.9519 -3.8095 1.1103 34 1 9.9505 -4.5093 -0.2345 35 1 12.5663 -3.7009 -2.5166 36 1 9.7508 -2.6560 -2.1849 37 1 10.6684 -1.1792 -1.6580 38 1 5.1386 2.5840 0.0019 39 1 3.7908 4.6434 -0.0086 40 1 0.4726 4.8942 0.8905 41 1 -0.2797 5.6901 -1.2323 42 1 3.0767 6.3415 1.2260 43 1 3.0997 6.3252 -1.2067 44 1 0.2146 2.3196 0.0000 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_60476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:39:04 Heat of formation + Delta-G solvation = -131.825965 kcal Electronic energy + Delta-G solvation = -26787.521229 eV Core-core repulsion = 22673.565820 eV Total energy + Delta-G solvation = -4113.955410 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93321 -41.09794 -40.23935 -39.35971 -38.82254 -37.06616 -36.63687 -35.14450 -32.29179 -31.64550 -30.51621 -28.61498 -27.99523 -26.73744 -26.16260 -23.90183 -23.25791 -22.51836 -21.83583 -20.50262 -19.84132 -18.88246 -18.53130 -18.25798 -18.10794 -17.65342 -17.53491 -17.03936 -16.77655 -16.43314 -16.25884 -15.90176 -15.85970 -15.60549 -15.48003 -14.95182 -14.79423 -14.39903 -14.21387 -14.05086 -13.74824 -13.60337 -13.48108 -13.46815 -12.83668 -12.70259 -12.49070 -12.41240 -12.33082 -12.26477 -12.12287 -11.89743 -11.84411 -11.32893 -11.12827 -10.73024 -10.32734 -10.27690 -9.90125 -9.03852 -4.89822 0.03369 0.09852 1.32303 1.35989 1.38366 1.68557 1.99230 2.21021 2.39544 2.47067 3.26263 3.33877 3.39472 3.50036 3.57206 3.65571 3.71486 3.79189 3.83352 3.90601 3.96874 3.99092 4.09552 4.15140 4.18104 4.26642 4.28329 4.31199 4.46341 4.49040 4.60053 4.63065 4.74235 4.77980 4.80588 4.84703 4.92131 4.97494 5.09643 5.22196 5.22664 5.41796 5.43187 5.85082 6.31955 6.43099 6.87711 6.91435 7.05034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.083 3.917 4 C 0.084 3.916 5 O -0.311 6.311 6 C 0.034 3.966 7 C 0.511 3.489 8 O -0.574 6.574 9 N -0.705 5.705 10 C 0.133 3.867 11 C -0.107 4.107 12 H 0.128 0.872 13 C -0.131 4.131 14 C 0.072 3.928 15 H 0.104 0.896 16 O -0.586 6.586 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.134 4.134 20 C -0.085 4.085 21 C -0.081 4.081 22 O -0.565 6.565 23 Si 0.779 3.221 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.422 0.578 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.173 0.827 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.404 0.596 42 H -0.283 1.283 43 H -0.293 1.293 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 9.935 1.538 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.038 3.962 4 C 0.039 3.961 5 O -0.225 6.225 6 C -0.043 4.043 7 C 0.297 3.703 8 O -0.453 6.453 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.126 4.126 12 H 0.145 0.855 13 C -0.169 4.169 14 C 0.013 3.987 15 H 0.122 0.878 16 O -0.395 6.395 17 C -0.199 4.199 18 C -0.178 4.178 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.191 4.191 22 O -0.375 6.375 23 Si 0.684 3.316 24 C -0.166 4.166 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.190 0.810 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.255 0.745 42 H -0.210 1.210 43 H -0.221 1.221 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.201 8.140 1.776 8.925 hybrid contribution 0.277 -0.164 -0.327 0.459 sum 3.478 7.976 1.449 8.821 Atomic orbital electron populations 1.23346 0.76454 1.05463 1.02333 1.86199 1.23354 1.26163 1.88889 1.18660 0.89760 0.85853 1.01967 1.18499 0.88432 0.86224 1.02969 1.86226 1.18236 1.28700 1.89298 1.22774 0.79354 0.95335 1.06878 1.20527 0.83134 0.90706 0.75965 1.90777 1.64209 1.40184 1.50107 1.45631 1.04989 1.10618 1.74730 1.21322 0.92236 0.83986 1.01518 1.22528 0.91560 0.99463 0.99001 0.85450 1.23111 0.96956 0.97184 0.99667 1.23478 0.95027 0.90041 0.90122 0.87817 1.86505 1.67136 1.40225 1.45599 1.23736 0.98196 1.01550 0.96382 1.21263 1.02037 0.89441 1.05058 1.20801 0.93222 0.98223 1.02878 1.19507 0.93430 0.94524 1.01085 1.24896 1.00404 1.02166 0.91587 1.86443 1.59328 1.49581 1.42185 0.94272 0.78632 0.82133 0.76570 1.21064 1.00965 0.90041 1.04491 0.91286 0.91719 0.86824 0.85794 0.85490 0.73960 0.92128 0.92890 0.89468 0.90694 0.75531 0.90792 0.89072 0.81007 0.84995 0.88823 0.74495 1.20990 1.22094 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.31 10.28 -79.61 -0.82 -5.13 16 3 C 0.08 0.93 6.70 22.57 0.15 1.08 16 4 C 0.08 0.81 6.70 22.57 0.15 0.96 16 5 O -0.31 -3.66 9.45 -67.07 -0.63 -4.30 16 6 C 0.03 0.02 5.22 71.23 0.37 0.40 16 7 C 0.51 3.16 7.91 87.66 0.69 3.86 16 8 O -0.57 -10.84 16.50 16.00 0.26 -10.58 16 9 N -0.70 1.51 5.56 -463.05 -2.57 -1.06 16 10 C 0.13 0.04 5.51 86.38 0.48 0.51 16 11 C -0.11 0.59 3.76 -10.27 -0.04 0.55 16 12 H 0.13 -1.31 8.14 -2.39 -0.02 -1.33 16 13 C -0.13 0.25 7.47 31.12 0.23 0.49 16 14 C 0.07 -0.23 5.21 31.12 0.16 -0.07 16 15 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 16 O -0.59 -0.70 13.67 -148.98 -2.04 -2.74 16 17 C -0.16 0.78 7.47 31.12 0.23 1.01 16 18 C -0.16 -0.52 9.04 22.35 0.20 -0.32 16 19 C -0.13 -0.58 8.66 22.27 0.19 -0.39 16 20 C -0.09 -0.45 5.42 -19.86 -0.11 -0.55 16 21 C -0.08 0.09 2.81 71.23 0.20 0.29 16 22 O -0.57 0.42 12.74 -148.98 -1.90 -1.48 16 23 Si 0.78 -2.90 29.78 68.60 2.04 -0.86 16 24 C -0.15 -1.03 8.60 22.35 0.19 -0.84 16 25 H 0.07 0.01 7.66 -2.38 -0.02 -0.01 16 26 H 0.06 0.09 7.66 -2.39 -0.02 0.07 16 27 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.12 -0.73 7.67 -2.39 -0.02 -0.75 16 29 H 0.13 -0.83 7.66 -2.39 -0.02 -0.85 16 30 H 0.42 -4.48 8.47 -92.71 -0.79 -5.26 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.05 0.26 7.85 -2.38 -0.02 0.24 16 33 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 34 H 0.07 0.17 8.10 -2.39 -0.02 0.15 16 35 H 0.39 -2.81 9.12 -74.05 -0.68 -3.49 16 36 H 0.07 -0.04 7.90 -2.39 -0.02 -0.06 16 37 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.17 -0.86 6.30 -2.91 -0.02 -0.88 16 39 H 0.13 0.22 4.87 -2.91 -0.01 0.21 16 40 H 0.09 -0.47 7.96 -2.39 -0.02 -0.49 16 41 H 0.40 -4.63 8.74 -74.06 -0.65 -5.28 16 42 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 43 H -0.29 -1.00 7.11 99.48 0.71 -0.29 16 44 H 0.15 0.54 6.30 -2.91 -0.02 0.53 16 Total: 0.00 -34.30 367.59 -2.44 -36.74 By element: Atomic # 1 Polarization: -17.74 SS G_CDS: -1.01 Total: -18.75 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.22 Total: 8.14 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -2.57 Total: -1.06 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -5.12 Total: -24.21 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.04 Total: -0.86 kcal Total: -34.30 -2.44 -36.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_60476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.085 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds