Wall clock time and date at job start Sat Mar 6 2021 18:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37878 * 126.45587 * 2 1 4 4 C 1.46672 * 126.23025 * 359.96487 * 3 2 1 5 5 O 1.21699 * 120.00429 * 6.92438 * 4 3 2 6 6 N 1.34780 * 119.99939 * 186.93175 * 4 3 2 7 7 C 1.46506 * 119.99644 * 6.35187 * 6 4 3 8 8 C 1.46495 * 120.00388 * 186.34827 * 6 4 3 9 9 H 1.09005 * 112.90272 * 11.25368 * 8 6 4 10 10 C 1.53786 * 113.61319 * 142.49998 * 8 6 4 11 11 C 1.53788 * 87.07678 * 139.98587 * 10 8 6 12 12 H 1.08997 * 113.61589 * 89.12141 * 11 10 8 13 13 C 1.50704 * 113.60810 * 220.01963 * 11 10 8 14 14 N 1.34781 * 119.99734 * 277.49327 * 13 11 10 15 15 O 1.21276 * 120.00122 * 97.50107 * 13 11 10 16 16 C 1.53774 * 113.61676 * 239.99997 * 8 6 4 17 17 N 1.37649 * 107.52917 * 179.69987 * 3 2 1 18 18 C 1.35530 * 108.64697 * 0.26284 * 17 3 2 19 19 C 1.50703 * 125.56161 * 180.02562 * 18 17 3 20 20 O 1.42904 * 109.47043 * 65.00212 * 19 18 17 21 21 Si 1.86305 * 109.47026 * 184.99909 * 19 18 17 22 22 C 1.35453 * 108.87289 * 359.97438 * 18 17 3 23 23 H 1.09004 * 109.47133 * 90.00246 * 1 2 3 24 24 H 1.09000 * 109.46839 * 210.00076 * 1 2 3 25 25 H 1.08996 * 109.47115 * 330.00201 * 1 2 3 26 26 H 1.09004 * 109.46522 * 275.84242 * 7 6 4 27 27 H 1.08997 * 109.47176 * 35.84204 * 7 6 4 28 28 H 1.08998 * 109.46962 * 155.84616 * 7 6 4 29 29 H 1.08999 * 113.61409 * 25.43817 * 10 8 6 30 30 H 1.08995 * 113.61201 * 254.52825 * 10 8 6 31 31 H 0.96996 * 120.00507 * 0.02562 * 14 13 11 32 32 H 0.97000 * 119.99776 * 180.02562 * 14 13 11 33 33 H 1.09005 * 113.61516 * 105.47006 * 16 8 6 34 34 H 1.09002 * 113.69072 * 334.57585 * 16 8 6 35 35 H 0.97005 * 125.67195 * 180.23541 * 17 3 2 36 36 H 1.08995 * 109.47179 * 304.99640 * 19 18 17 37 37 H 0.96697 * 113.99655 * 179.97438 * 20 19 18 38 38 H 1.48505 * 109.99807 * 299.99986 * 21 19 18 39 39 H 1.48501 * 110.00006 * 61.31792 * 21 19 18 40 40 H 1.07998 * 126.06548 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1090 0.0000 4 6 1.8898 2.5092 -0.0007 5 8 0.7098 2.7789 0.1257 6 7 2.7955 3.4974 -0.1415 7 6 4.1942 3.1729 -0.4327 8 6 2.3814 4.8958 -0.0035 9 1 1.3748 5.0022 0.4009 10 6 3.4245 5.7806 0.6996 11 6 3.0715 6.8732 -0.3234 12 1 2.2537 7.5203 -0.0065 13 6 4.2679 7.6418 -0.8226 14 7 4.7626 8.6643 -0.0971 15 8 4.7855 7.3402 -1.8771 16 6 2.6311 5.7396 -1.2645 17 7 3.6284 0.6625 0.0069 18 6 3.6218 -0.6928 0.0052 19 6 4.8434 -1.5752 0.0116 20 8 5.5554 -1.3940 1.2373 21 14 4.3232 -3.3571 -0.1468 22 6 2.3380 -1.1247 -0.0021 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 4.7168 2.9506 0.4977 27 1 4.2365 2.3043 -1.0897 28 1 4.6699 4.0226 -0.9225 29 1 4.4452 5.4094 0.6074 30 1 3.1579 6.0394 1.7243 31 1 4.3489 8.9053 0.7464 32 1 5.5324 9.1592 -0.4186 33 1 1.7242 5.9654 -1.8255 34 1 3.4347 5.3582 -1.8947 35 1 4.4191 1.2245 0.0117 36 1 5.4882 -1.3091 -0.8259 37 1 6.3551 -1.9327 1.3109 38 1 3.4435 -3.7323 0.9893 39 1 3.6094 -3.5654 -1.4323 40 1 2.0137 -2.1548 -0.0047 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12311536_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:06:19 Heat of formation + Delta-G solvation = -12.985922 kcal Electronic energy + Delta-G solvation = -24109.801284 eV Core-core repulsion = 20507.511728 eV Total energy + Delta-G solvation = -3602.289556 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.76104 -41.62937 -40.11723 -38.52937 -37.75962 -35.90581 -34.67733 -33.41321 -31.76680 -28.91692 -28.12670 -27.71038 -26.89860 -26.06926 -23.17274 -21.68257 -21.28586 -20.33509 -20.13525 -18.96441 -18.61897 -18.41275 -17.94230 -17.17831 -16.90120 -16.73453 -16.36536 -15.84133 -15.40697 -15.16379 -15.11856 -15.03432 -14.55011 -14.32623 -14.22024 -13.84326 -13.63922 -13.53700 -13.34378 -13.22760 -13.19336 -12.98403 -12.48446 -12.42395 -12.21721 -11.98258 -11.79668 -11.00604 -10.84422 -10.76624 -10.56206 -9.88657 -9.74520 -9.10369 -5.05430 0.37781 1.11107 1.49398 1.51921 1.67825 1.73076 1.98322 2.16318 2.35200 2.48804 3.16761 3.20549 3.30218 3.52471 3.56752 3.64066 3.72714 3.76501 4.02957 4.06203 4.07109 4.14532 4.28938 4.37655 4.41052 4.47955 4.53405 4.65040 4.74317 4.84219 4.90124 5.02517 5.05517 5.23577 5.37014 5.44811 5.69666 5.71841 5.91918 6.22110 6.24255 6.31771 6.42897 7.09163 7.18702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.062 4.062 3 C -0.054 4.054 4 C 0.595 3.405 5 O -0.519 6.519 6 N -0.607 5.607 7 C 0.056 3.944 8 C 0.126 3.874 9 H 0.129 0.871 10 C -0.134 4.134 11 C -0.138 4.138 12 H 0.121 0.879 13 C 0.529 3.471 14 N -0.854 5.854 15 O -0.541 6.541 16 C -0.129 4.129 17 N -0.528 5.528 18 C 0.067 3.933 19 C -0.060 4.060 20 O -0.549 6.549 21 Si 0.716 3.284 22 C -0.206 4.206 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.403 0.597 32 H 0.402 0.598 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.421 0.579 36 H 0.075 0.925 37 H 0.387 0.613 38 H -0.247 1.247 39 H -0.252 1.252 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -0.197 2.251 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 C -0.167 4.167 4 C 0.385 3.615 5 O -0.395 6.395 6 N -0.339 5.339 7 C -0.088 4.088 8 C 0.023 3.977 9 H 0.146 0.854 10 C -0.172 4.172 11 C -0.160 4.160 12 H 0.139 0.861 13 C 0.313 3.687 14 N -0.417 5.417 15 O -0.417 6.417 16 C -0.168 4.168 17 N -0.131 5.131 18 C -0.051 4.051 19 C -0.169 4.169 20 O -0.356 6.356 21 Si 0.615 3.385 22 C -0.231 4.231 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.235 0.765 38 H -0.172 1.172 39 H -0.176 1.176 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.107 -0.370 1.651 4.442 hybrid contribution 0.708 1.336 0.226 1.529 sum 4.816 0.965 1.877 5.258 Atomic orbital electron populations 1.20413 0.88765 1.03429 1.02528 1.19897 0.96054 0.90124 1.00971 1.20120 0.83506 0.93439 1.19643 1.17072 0.85390 0.82887 0.76146 1.90818 1.15929 1.82873 1.49871 1.47633 1.08686 1.06115 1.71477 1.22140 0.82633 1.03113 1.00881 1.22616 0.99900 0.78239 0.96961 0.85365 1.23405 1.00514 0.94486 0.98845 1.22576 0.97335 0.96349 0.99740 0.86082 1.20374 0.84642 0.79840 0.83847 1.43905 1.36046 1.35635 1.26110 1.90764 1.60895 1.67236 1.22827 1.23369 1.03051 0.93564 0.96842 1.42895 1.07691 1.06493 1.56029 1.19962 0.95018 0.83141 1.07013 1.24521 0.92964 1.09778 0.89669 1.86488 1.42739 1.69789 1.36596 0.95227 0.86266 0.75963 0.81055 1.20484 0.91102 0.98725 1.12769 0.91246 0.91684 0.89669 0.91981 0.90709 0.88971 0.88993 0.89487 0.76868 0.76679 0.89867 0.88187 0.73339 0.90685 0.76500 1.17152 1.17632 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 9.91 36.01 0.36 0.02 16 2 C -0.06 -0.28 6.21 -104.16 -0.65 -0.93 16 3 C -0.05 -0.21 6.63 -81.98 -0.54 -0.76 16 4 C 0.59 2.46 7.63 -12.85 -0.10 2.36 16 5 O -0.52 -3.47 14.30 5.19 0.07 -3.40 16 6 N -0.61 -0.65 3.08 -174.54 -0.54 -1.19 16 7 C 0.06 -0.09 7.51 59.85 0.45 0.36 16 8 C 0.13 -0.01 4.18 -67.12 -0.28 -0.29 16 9 H 0.13 0.10 7.29 -51.93 -0.38 -0.28 16 10 C -0.13 0.30 7.03 -25.91 -0.18 0.12 16 11 C -0.14 0.24 4.15 -90.95 -0.38 -0.13 16 12 H 0.12 -0.45 8.14 -51.93 -0.42 -0.87 16 13 C 0.53 0.19 7.63 -10.98 -0.08 0.11 16 14 N -0.85 2.44 8.87 31.22 0.28 2.72 16 15 O -0.54 -2.68 16.73 5.56 0.09 -2.59 16 16 C -0.13 0.00 6.92 -25.92 -0.18 -0.18 16 17 N -0.53 -0.96 5.07 -5.70 -0.03 -0.99 16 18 C 0.07 0.16 6.50 -81.95 -0.53 -0.37 16 19 C -0.06 0.05 3.07 36.01 0.11 0.17 16 20 O -0.55 0.53 12.86 -35.23 -0.45 0.08 16 21 Si 0.72 -1.28 30.56 -169.99 -5.19 -6.48 16 22 C -0.21 -0.77 9.27 -39.98 -0.37 -1.14 16 23 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.08 0.41 6.37 -51.93 -0.33 0.08 16 26 H 0.06 -0.17 7.46 -51.93 -0.39 -0.56 16 27 H 0.07 -0.12 5.67 -51.93 -0.29 -0.42 16 28 H 0.09 -0.19 6.12 -51.93 -0.32 -0.51 16 29 H 0.09 -0.20 6.54 -51.93 -0.34 -0.54 16 30 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 31 H 0.40 -2.28 8.83 -40.82 -0.36 -2.64 16 32 H 0.40 -1.26 8.93 -40.82 -0.36 -1.63 16 33 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.10 0.14 6.30 -51.93 -0.33 -0.19 16 35 H 0.42 -0.27 4.92 -40.82 -0.20 -0.47 16 36 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 37 H 0.39 -2.37 8.74 45.56 0.40 -1.97 16 38 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 39 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 40 H 0.14 0.39 6.19 -52.49 -0.32 0.07 16 LS Contribution 324.35 15.07 4.89 4.89 Total: 0.00 -11.42 324.35 -8.21 -19.63 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: -4.95 Total: -12.02 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.38 Total: -0.66 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -0.29 Total: 0.54 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.29 Total: -5.91 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.19 Total: -6.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -11.42 -8.21 -19.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12311536_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.648 kcal (2) G-P(sol) polarization free energy of solvation -11.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds