Wall clock time and date at job start Sat Mar 6 2021 18:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37878 * 126.45587 * 2 1 4 4 C 1.46672 * 126.23025 * 359.96487 * 3 2 1 5 5 O 1.21699 * 120.00429 * 6.92438 * 4 3 2 6 6 N 1.34780 * 119.99939 * 186.93175 * 4 3 2 7 7 C 1.46506 * 119.99644 * 6.35187 * 6 4 3 8 8 C 1.46495 * 120.00388 * 186.34827 * 6 4 3 9 9 H 1.09005 * 112.90272 * 11.25368 * 8 6 4 10 10 C 1.53786 * 113.61319 * 142.49998 * 8 6 4 11 11 C 1.53788 * 87.07678 * 139.98587 * 10 8 6 12 12 H 1.08997 * 113.61589 * 89.12141 * 11 10 8 13 13 C 1.50704 * 113.60810 * 220.01963 * 11 10 8 14 14 N 1.34781 * 119.99734 * 277.49327 * 13 11 10 15 15 O 1.21276 * 120.00122 * 97.50107 * 13 11 10 16 16 C 1.53774 * 113.61676 * 239.99997 * 8 6 4 17 17 N 1.37649 * 107.52917 * 179.69987 * 3 2 1 18 18 C 1.35530 * 108.64697 * 0.26284 * 17 3 2 19 19 C 1.50703 * 125.56161 * 180.02562 * 18 17 3 20 20 O 1.42904 * 109.47043 * 65.00212 * 19 18 17 21 21 Si 1.86305 * 109.47026 * 184.99909 * 19 18 17 22 22 C 1.35453 * 108.87289 * 359.97438 * 18 17 3 23 23 H 1.09004 * 109.47133 * 90.00246 * 1 2 3 24 24 H 1.09000 * 109.46839 * 210.00076 * 1 2 3 25 25 H 1.08996 * 109.47115 * 330.00201 * 1 2 3 26 26 H 1.09004 * 109.46522 * 275.84242 * 7 6 4 27 27 H 1.08997 * 109.47176 * 35.84204 * 7 6 4 28 28 H 1.08998 * 109.46962 * 155.84616 * 7 6 4 29 29 H 1.08999 * 113.61409 * 25.43817 * 10 8 6 30 30 H 1.08995 * 113.61201 * 254.52825 * 10 8 6 31 31 H 0.96996 * 120.00507 * 0.02562 * 14 13 11 32 32 H 0.97000 * 119.99776 * 180.02562 * 14 13 11 33 33 H 1.09005 * 113.61516 * 105.47006 * 16 8 6 34 34 H 1.09002 * 113.69072 * 334.57585 * 16 8 6 35 35 H 0.97005 * 125.67195 * 180.23541 * 17 3 2 36 36 H 1.08995 * 109.47179 * 304.99640 * 19 18 17 37 37 H 0.96697 * 113.99655 * 179.97438 * 20 19 18 38 38 H 1.48505 * 109.99807 * 299.99986 * 21 19 18 39 39 H 1.48501 * 110.00006 * 61.31792 * 21 19 18 40 40 H 1.07998 * 126.06548 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1090 0.0000 4 6 1.8898 2.5092 -0.0007 5 8 0.7098 2.7789 0.1257 6 7 2.7955 3.4974 -0.1415 7 6 4.1942 3.1729 -0.4327 8 6 2.3814 4.8958 -0.0035 9 1 1.3748 5.0022 0.4009 10 6 3.4245 5.7806 0.6996 11 6 3.0715 6.8732 -0.3234 12 1 2.2537 7.5203 -0.0065 13 6 4.2679 7.6418 -0.8226 14 7 4.7626 8.6643 -0.0971 15 8 4.7855 7.3402 -1.8771 16 6 2.6311 5.7396 -1.2645 17 7 3.6284 0.6625 0.0069 18 6 3.6218 -0.6928 0.0052 19 6 4.8434 -1.5752 0.0116 20 8 5.5554 -1.3940 1.2373 21 14 4.3232 -3.3571 -0.1468 22 6 2.3380 -1.1247 -0.0021 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 4.7168 2.9506 0.4977 27 1 4.2365 2.3043 -1.0897 28 1 4.6699 4.0226 -0.9225 29 1 4.4452 5.4094 0.6074 30 1 3.1579 6.0394 1.7243 31 1 4.3489 8.9053 0.7464 32 1 5.5324 9.1592 -0.4186 33 1 1.7242 5.9654 -1.8255 34 1 3.4347 5.3582 -1.8947 35 1 4.4191 1.2245 0.0117 36 1 5.4882 -1.3091 -0.8259 37 1 6.3551 -1.9327 1.3109 38 1 3.4435 -3.7323 0.9893 39 1 3.6094 -3.5654 -1.4323 40 1 2.0137 -2.1548 -0.0047 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12311536_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:06:18 Heat of formation + Delta-G solvation = -19.262516 kcal Electronic energy + Delta-G solvation = -24110.073458 eV Core-core repulsion = 20507.511728 eV Total energy + Delta-G solvation = -3602.561730 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.93622 -41.65209 -40.27436 -38.64234 -37.66281 -36.01247 -34.63554 -33.63474 -31.88965 -28.98102 -28.23294 -27.77529 -26.82570 -26.11204 -23.27896 -21.81502 -21.34008 -20.37253 -20.26260 -19.01661 -18.51725 -18.44067 -17.88739 -17.28015 -16.97621 -16.78450 -16.38215 -15.81746 -15.45889 -15.25567 -15.23415 -15.13742 -14.64812 -14.38864 -14.33369 -13.99074 -13.76062 -13.61131 -13.39366 -13.29412 -13.21740 -13.10417 -12.55726 -12.43414 -12.22761 -12.02924 -11.73416 -11.21372 -10.94910 -10.70263 -10.45922 -10.04909 -9.92066 -9.30553 -4.94634 0.14926 1.17692 1.32009 1.51204 1.65373 1.74196 1.99425 2.08076 2.14124 2.60346 3.20531 3.29002 3.36071 3.44921 3.62698 3.74802 3.80065 3.83292 3.90615 4.05946 4.18209 4.20920 4.35605 4.42632 4.46092 4.51513 4.55233 4.58807 4.63366 4.74199 4.81417 4.88740 4.98791 5.04973 5.17016 5.32483 5.51595 5.67377 5.84403 6.08227 6.23008 6.42478 6.84239 6.86209 7.29552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.086 4.086 3 C -0.068 4.068 4 C 0.588 3.412 5 O -0.556 6.556 6 N -0.601 5.601 7 C 0.051 3.949 8 C 0.118 3.882 9 H 0.118 0.882 10 C -0.118 4.118 11 C -0.127 4.127 12 H 0.146 0.854 13 C 0.526 3.474 14 N -0.836 5.836 15 O -0.594 6.594 16 C -0.134 4.134 17 N -0.515 5.515 18 C 0.066 3.934 19 C -0.064 4.064 20 O -0.565 6.565 21 Si 0.813 3.187 22 C -0.231 4.231 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.419 0.581 32 H 0.406 0.594 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.432 0.568 36 H 0.106 0.894 37 H 0.410 0.590 38 H -0.299 1.299 39 H -0.290 1.290 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 0.327 3.055 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.181 4.181 4 C 0.379 3.621 5 O -0.435 6.435 6 N -0.332 5.332 7 C -0.091 4.091 8 C 0.015 3.985 9 H 0.136 0.864 10 C -0.156 4.156 11 C -0.148 4.148 12 H 0.164 0.836 13 C 0.311 3.689 14 N -0.399 5.399 15 O -0.474 6.474 16 C -0.173 4.173 17 N -0.120 5.120 18 C -0.053 4.053 19 C -0.173 4.173 20 O -0.376 6.376 21 Si 0.717 3.283 22 C -0.255 4.255 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.237 0.763 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.280 0.720 36 H 0.124 0.876 37 H 0.263 0.737 38 H -0.226 1.226 39 H -0.218 1.218 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.087 0.208 2.495 6.582 hybrid contribution 0.120 1.170 -0.008 1.177 sum 6.208 1.379 2.487 6.828 Atomic orbital electron populations 1.20359 0.88807 1.03085 1.02501 1.20154 0.96560 0.90965 1.01791 1.20138 0.84370 0.93328 1.20269 1.17207 0.85335 0.83470 0.76084 1.90788 1.17399 1.83403 1.51901 1.47701 1.09286 1.06043 1.70144 1.22314 0.81252 1.03570 1.02011 1.22716 1.00388 0.77862 0.97490 0.86364 1.23340 0.99791 0.93000 0.99513 1.22577 0.97202 0.96128 0.98940 0.83637 1.20682 0.84770 0.80177 0.83277 1.43800 1.35613 1.34301 1.26228 1.90745 1.62567 1.68925 1.25190 1.23332 1.02291 0.94732 0.96948 1.42901 1.07391 1.06544 1.55119 1.20527 0.95917 0.83624 1.05252 1.24667 0.92538 1.09146 0.90950 1.86432 1.44118 1.70711 1.36306 0.94286 0.84049 0.73754 0.76198 1.20643 0.91998 0.98705 1.14165 0.91143 0.90731 0.91176 0.90015 0.90545 0.88196 0.88706 0.87471 0.74977 0.76331 0.90579 0.89655 0.71971 0.87610 0.73748 1.22634 1.21774 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.91 71.24 0.71 -0.16 16 2 C -0.09 -0.95 6.21 -19.56 -0.12 -1.07 16 3 C -0.07 -0.62 6.63 40.35 0.27 -0.35 16 4 C 0.59 5.76 7.63 86.44 0.66 6.42 16 5 O -0.56 -8.79 14.30 -4.34 -0.06 -8.85 16 6 N -0.60 -1.64 3.08 -824.34 -2.54 -4.18 16 7 C 0.05 -0.18 7.51 127.77 0.96 0.78 16 8 C 0.12 0.03 4.18 45.52 0.19 0.22 16 9 H 0.12 0.30 7.29 -2.38 -0.02 0.28 16 10 C -0.12 0.67 7.03 31.12 0.22 0.89 16 11 C -0.13 0.54 4.15 -11.01 -0.05 0.50 16 12 H 0.15 -1.33 8.14 -2.39 -0.02 -1.35 16 13 C 0.53 0.14 7.63 87.66 0.67 0.81 16 14 N -0.84 5.83 8.87 -173.53 -1.54 4.29 16 15 O -0.59 -6.29 16.73 -3.02 -0.05 -6.34 16 16 C -0.13 -0.11 6.92 31.12 0.22 0.11 16 17 N -0.52 -1.84 5.07 -171.93 -0.87 -2.71 16 18 C 0.07 0.31 6.50 41.34 0.27 0.58 16 19 C -0.06 0.21 3.07 71.24 0.22 0.43 16 20 O -0.56 2.17 12.86 -148.98 -1.92 0.26 16 21 Si 0.81 -3.10 30.56 68.60 2.10 -1.00 16 22 C -0.23 -2.01 9.27 22.01 0.20 -1.80 16 23 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.88 6.37 -2.39 -0.02 0.86 16 26 H 0.08 -0.58 7.46 -2.39 -0.02 -0.60 16 27 H 0.08 -0.28 5.67 -2.39 -0.01 -0.29 16 28 H 0.10 -0.45 6.12 -2.39 -0.01 -0.46 16 29 H 0.09 -0.55 6.54 -2.39 -0.02 -0.57 16 30 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H 0.42 -5.59 8.83 -92.71 -0.82 -6.41 16 32 H 0.41 -2.93 8.93 -92.71 -0.83 -3.76 16 33 H 0.08 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.08 0.35 6.30 -2.39 -0.02 0.34 16 35 H 0.43 -0.93 4.92 -92.70 -0.46 -1.39 16 36 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 37 H 0.41 -6.06 8.74 -74.06 -0.65 -6.70 16 38 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 39 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 40 H 0.14 1.05 6.19 -2.91 -0.02 1.03 16 Total: 0.00 -29.63 324.35 -2.06 -31.68 By element: Atomic # 1 Polarization: -18.92 SS G_CDS: -1.58 Total: -20.50 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.41 Total: 7.36 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -4.95 Total: -2.60 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -2.03 Total: -14.93 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.10 Total: -1.00 kcal Total: -29.63 -2.06 -31.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12311536_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.420 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds