Wall clock time and date at job start Sat Mar 6 2021 17:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35450 * 125.56613 * 2 1 4 4 C 1.50705 * 126.06681 * 0.06096 * 3 2 1 5 5 O 1.42901 * 109.46664 * 301.43559 * 4 3 2 6 6 Si 1.86295 * 109.47314 * 61.43529 * 4 3 2 7 7 C 1.39837 * 107.86571 * 180.02562 * 3 2 1 8 8 C 1.50697 * 126.45541 * 180.02562 * 7 3 2 9 9 C 1.37869 * 107.08407 * 0.02562 * 7 3 2 10 10 C 1.46686 * 126.22868 * 179.97438 * 9 7 3 11 11 O 1.21690 * 120.00305 * 6.51494 * 10 9 7 12 12 N 1.34779 * 119.99587 * 186.50592 * 10 9 7 13 13 C 1.46500 * 120.00249 * 5.56995 * 12 10 9 14 14 C 1.46501 * 119.99745 * 185.56510 * 12 10 9 15 15 C 1.52995 * 109.47182 * 269.99989 * 14 12 10 16 16 H 1.09003 * 112.90483 * 43.75233 * 15 14 12 17 17 C 1.53780 * 113.61572 * 175.00081 * 15 14 12 18 18 C 1.53775 * 87.08231 * 139.98333 * 17 15 14 19 19 H 1.08999 * 113.61623 * 89.20327 * 18 17 15 20 20 O 1.42898 * 113.61504 * 220.01827 * 18 17 15 21 21 C 1.53777 * 113.61694 * 272.49891 * 15 14 12 22 22 N 1.35540 * 125.56438 * 180.31053 * 2 1 3 23 23 H 1.09004 * 109.47153 * 91.56899 * 1 2 3 24 24 H 1.09004 * 109.47282 * 211.56563 * 1 2 3 25 25 H 1.09007 * 109.47393 * 331.56561 * 1 2 3 26 26 H 1.08998 * 109.47106 * 181.43706 * 4 3 2 27 27 H 0.96698 * 114.00160 * 59.99696 * 5 4 3 28 28 H 1.48494 * 110.00184 * 63.91981 * 6 4 3 29 29 H 1.48497 * 109.99931 * 185.24099 * 6 4 3 30 30 H 1.08997 * 109.47680 * 269.98673 * 8 7 3 31 31 H 1.08996 * 109.47293 * 29.99201 * 8 7 3 32 32 H 1.09004 * 109.47064 * 149.98147 * 8 7 3 33 33 H 1.09004 * 109.47235 * 275.97547 * 13 12 10 34 34 H 1.09004 * 109.47039 * 35.97212 * 13 12 10 35 35 H 1.08998 * 109.47435 * 155.97706 * 13 12 10 36 36 H 1.09004 * 109.46501 * 150.00428 * 14 12 10 37 37 H 1.08993 * 109.47228 * 30.00518 * 14 12 10 38 38 H 1.09001 * 113.61660 * 254.53300 * 17 15 14 39 39 H 1.09003 * 113.61365 * 25.35163 * 17 15 14 40 40 H 0.96701 * 114.00360 * 180.02562 * 20 18 17 41 41 H 1.08993 * 113.61711 * 334.57122 * 21 15 14 42 42 H 1.09008 * 113.61124 * 105.47276 * 21 15 14 43 43 H 0.97003 * 125.67461 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2947 1.1018 0.0000 4 6 1.8199 2.5321 0.0013 5 8 1.0019 2.7633 -1.1474 6 14 0.8285 2.8559 1.5449 7 6 3.6269 0.6766 -0.0006 8 6 4.8485 1.5591 -0.0003 9 6 3.6121 -0.7020 -0.0015 10 6 4.7860 -1.5816 -0.0029 11 8 5.9009 -1.1086 0.1162 12 7 4.6296 -2.9136 -0.1360 13 6 3.3017 -3.4725 -0.4013 14 6 5.7878 -3.8027 -0.0155 15 6 6.4262 -3.9981 -1.3921 16 1 6.5119 -3.0690 -1.9557 17 6 7.7256 -4.8197 -1.3576 18 6 7.2393 -5.4966 -2.6499 19 1 7.5486 -4.9781 -3.5574 20 8 7.5036 -6.9002 -2.6953 21 6 5.8099 -5.1532 -2.1986 22 7 2.2952 -1.1026 -0.0060 23 1 -0.3634 -0.0281 -1.0273 24 1 -0.3634 -0.8756 0.5380 25 1 -0.3634 0.9037 0.4893 26 1 2.6803 3.2006 -0.0248 27 1 0.2159 2.2017 -1.1901 28 1 1.6930 2.7109 2.7436 29 1 0.2490 4.2224 1.4990 30 1 5.1430 1.7724 -1.0278 31 1 4.6220 2.4930 0.5141 32 1 5.6642 1.0502 0.5133 33 1 2.7639 -3.5934 0.5391 34 1 2.7469 -2.7974 -1.0528 35 1 3.4061 -4.4425 -0.8874 36 1 5.4658 -4.7677 0.3759 37 1 6.5165 -3.3600 0.6635 38 1 8.6255 -4.2194 -1.4911 39 1 7.7913 -5.4973 -0.5063 40 1 7.2004 -7.3315 -3.5060 41 1 5.3511 -5.9229 -1.5782 42 1 5.1632 -4.8220 -3.0113 43 1 1.9833 -2.0210 -0.0113 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:13:08 Heat of formation + Delta-G solvation = -33.828838 kcal Electronic energy + Delta-G solvation = -24689.587190 eV Core-core repulsion = 21124.508250 eV Total energy + Delta-G solvation = -3565.078941 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83995 -40.93835 -39.83514 -37.79715 -37.06994 -35.78934 -33.96958 -32.77532 -29.93081 -29.22657 -28.55404 -26.86299 -26.59994 -26.07482 -23.67703 -21.62756 -20.99620 -20.55538 -20.19686 -18.59671 -18.49289 -17.65196 -17.27331 -16.99195 -16.84277 -16.38758 -15.80637 -15.59910 -15.31478 -15.06728 -14.79470 -14.49718 -14.33975 -14.25891 -14.11922 -13.94687 -13.61651 -13.47386 -13.27702 -13.22959 -13.21251 -13.01418 -12.76305 -12.66674 -12.40795 -12.37938 -12.07984 -11.82107 -11.31018 -11.11226 -10.79432 -10.57988 -9.89559 -9.50379 -8.96804 -5.02444 0.33903 1.20010 1.53455 1.75448 1.75723 2.02986 2.11869 2.25438 3.26743 3.42946 3.52690 3.59856 3.65632 3.77302 3.88279 3.91921 3.95436 3.98105 4.01778 4.21327 4.22965 4.32753 4.42182 4.50157 4.58497 4.60035 4.63083 4.69881 4.73476 4.75837 4.78267 4.86632 4.92551 4.95048 5.01321 5.09487 5.19429 5.25762 5.30556 5.46670 5.71883 5.80796 6.21236 6.47790 6.81600 6.85655 6.99359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.085 3.915 3 C -0.230 4.230 4 C -0.037 4.037 5 O -0.556 6.556 6 Si 0.772 3.228 7 C -0.083 4.083 8 C -0.093 4.093 9 C -0.077 4.077 10 C 0.582 3.418 11 O -0.567 6.567 12 N -0.611 5.611 13 C 0.050 3.950 14 C 0.131 3.869 15 C -0.118 4.118 16 H 0.075 0.925 17 C -0.128 4.128 18 C 0.073 3.927 19 H 0.086 0.914 20 O -0.579 6.579 21 C -0.148 4.148 22 N -0.524 5.524 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.389 0.611 28 H -0.304 1.304 29 H -0.289 1.289 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.395 0.605 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -6.784 -1.423 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.035 4.035 3 C -0.236 4.236 4 C -0.147 4.147 5 O -0.364 6.364 6 Si 0.678 3.322 7 C -0.091 4.091 8 C -0.150 4.150 9 C -0.189 4.189 10 C 0.373 3.627 11 O -0.447 6.447 12 N -0.343 5.343 13 C -0.092 4.092 14 C 0.009 3.991 15 C -0.138 4.138 16 H 0.093 0.907 17 C -0.166 4.166 18 C 0.014 3.986 19 H 0.103 0.897 20 O -0.387 6.387 21 C -0.186 4.186 22 N -0.130 5.130 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.239 0.761 28 H -0.232 1.232 29 H -0.216 1.216 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.245 0.755 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -8.502 -5.757 -0.204 10.270 hybrid contribution 0.972 -0.069 -0.845 1.290 sum -7.530 -5.826 -1.049 9.579 Atomic orbital electron populations 1.20887 0.83831 1.05593 1.05743 1.20883 0.95485 0.84942 1.02187 1.19593 0.92458 0.95747 1.15795 1.24456 0.98147 0.93132 0.98972 1.86500 1.40042 1.64997 1.44892 0.94317 0.83625 0.81790 0.72477 1.19962 0.95426 0.91807 1.01951 1.20306 0.94851 0.97954 1.01857 1.19820 0.84058 0.93396 1.21616 1.17361 0.87188 0.81998 0.76183 1.90796 1.26185 1.75419 1.52279 1.47760 1.10374 1.05033 1.71085 1.22454 0.82738 1.01665 1.02375 1.21520 0.87206 0.94132 0.96269 1.22567 0.96749 0.97450 0.97046 0.90704 1.23094 0.97373 0.97909 0.98248 1.23356 0.95717 0.81617 0.97925 0.89655 1.86489 1.84631 1.21323 1.46297 1.23683 0.97069 0.97478 1.00356 1.42861 1.03994 1.09769 1.56337 0.87130 0.87650 0.88202 0.88759 0.76114 1.23158 1.21633 0.91903 0.91588 0.91595 0.89937 0.90251 0.87475 0.87550 0.91569 0.91410 0.89014 0.75537 0.88232 0.90539 0.71541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.48 8.76 71.23 0.62 2.11 16 2 C 0.09 -0.35 6.77 41.34 0.28 -0.07 16 3 C -0.23 -0.71 4.59 -20.12 -0.09 -0.81 16 4 C -0.04 -0.10 2.89 71.24 0.21 0.10 16 5 O -0.56 -1.00 12.88 -148.98 -1.92 -2.92 16 6 Si 0.77 -0.06 29.78 68.60 2.04 1.98 16 7 C -0.08 -0.71 6.21 -19.57 -0.12 -0.83 16 8 C -0.09 -0.95 9.56 71.24 0.68 -0.27 16 9 C -0.08 -0.43 6.65 40.35 0.27 -0.16 16 10 C 0.58 4.68 7.63 86.45 0.66 5.34 16 11 O -0.57 -9.16 14.42 -4.32 -0.06 -9.22 16 12 N -0.61 0.01 2.87 -851.50 -2.45 -2.44 16 13 C 0.05 -0.47 8.80 127.77 1.12 0.66 16 14 C 0.13 -0.02 5.17 86.38 0.45 0.43 16 15 C -0.12 -0.02 3.96 -10.27 -0.04 -0.06 16 16 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 17 C -0.13 -0.17 7.47 31.12 0.23 0.06 16 18 C 0.07 -0.05 5.21 31.12 0.16 0.12 16 19 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 20 O -0.58 -0.54 13.67 -148.98 -2.04 -2.57 16 21 C -0.15 0.57 7.15 31.12 0.22 0.79 16 22 N -0.52 1.89 5.09 -171.94 -0.88 1.01 16 23 H 0.11 -1.93 8.08 -2.38 -0.02 -1.95 16 24 H 0.10 -1.92 8.14 -2.39 -0.02 -1.94 16 25 H 0.10 -1.60 4.42 -2.38 -0.01 -1.61 16 26 H 0.09 0.57 6.81 -2.39 -0.02 0.55 16 27 H 0.39 -3.06 6.82 -74.06 -0.51 -3.57 16 28 H -0.30 -2.39 7.11 99.48 0.71 -1.68 16 29 H -0.29 -1.73 7.11 99.48 0.71 -1.02 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.52 7.31 -2.39 -0.02 0.51 16 32 H 0.07 0.91 6.38 -2.38 -0.02 0.90 16 33 H 0.08 -1.09 7.54 -2.39 -0.02 -1.10 16 34 H 0.08 -0.82 5.54 -2.39 -0.01 -0.83 16 35 H 0.11 -1.36 7.71 -2.39 -0.02 -1.38 16 36 H 0.11 -0.55 7.77 -2.39 -0.02 -0.57 16 37 H 0.07 0.32 7.50 -2.39 -0.02 0.30 16 38 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.09 0.13 8.10 -2.39 -0.02 0.11 16 40 H 0.39 -2.91 9.12 -74.06 -0.68 -3.59 16 41 H 0.10 -0.54 7.90 -2.39 -0.02 -0.56 16 42 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 43 H 0.44 -4.61 4.85 -92.71 -0.45 -5.06 16 Total: 0.00 -27.48 338.46 -1.18 -28.66 By element: Atomic # 1 Polarization: -21.39 SS G_CDS: -0.54 Total: -21.93 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.65 Total: 7.42 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -3.32 Total: -1.43 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -4.02 Total: -14.71 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: 2.04 Total: 1.98 kcal Total: -27.48 -1.18 -28.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds