Wall clock time and date at job start Sat Mar 6 2021 17:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35711 * 117.00064 * 2 1 4 4 C 1.38694 * 119.86086 * 0.02562 * 3 2 1 5 5 C 1.38442 * 120.02883 * 179.97438 * 4 3 2 6 6 O 1.35656 * 120.12011 * 180.02562 * 5 4 3 7 7 C 1.42907 * 116.99833 * 359.97438 * 6 5 4 8 8 C 1.40299 * 119.75942 * 0.30168 * 5 4 3 9 9 C 1.47298 * 120.13254 * 179.72546 * 8 5 4 10 10 O 1.21619 * 120.00157 * 310.42733 * 9 8 5 11 11 N 1.34782 * 120.00157 * 130.43689 * 9 8 5 12 12 C 1.46501 * 119.99740 * 4.40781 * 11 9 8 13 13 C 1.46499 * 120.00050 * 184.41369 * 11 9 8 14 14 C 1.52999 * 109.47152 * 89.99622 * 13 11 9 15 15 H 1.08996 * 112.84728 * 314.66268 * 14 13 11 16 16 C 1.53782 * 113.61522 * 85.86646 * 14 13 11 17 17 C 1.53951 * 87.02156 * 139.94752 * 16 14 13 18 18 H 1.08999 * 113.53626 * 89.18502 * 17 16 14 19 19 O 1.42893 * 113.74651 * 220.05427 * 17 16 14 20 20 C 1.53780 * 113.61158 * 183.47094 * 14 13 11 21 21 C 1.39859 * 119.73226 * 359.42161 * 8 5 4 22 22 C 1.37547 * 119.95921 * 0.55468 * 21 8 5 23 23 C 1.50701 * 119.87661 * 179.76336 * 22 21 8 24 24 O 1.42896 * 109.47124 * 254.97904 * 23 22 21 25 25 Si 1.86294 * 109.47073 * 14.98217 * 23 22 21 26 26 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47258 * 299.99808 * 1 2 3 28 28 H 1.09002 * 109.46869 * 60.00054 * 1 2 3 29 29 H 1.07998 * 119.98332 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.46853 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.46891 * 59.99991 * 7 6 5 32 32 H 1.09003 * 109.47006 * 299.99904 * 7 6 5 33 33 H 1.09001 * 109.46856 * 93.00854 * 12 11 9 34 34 H 1.09006 * 109.46661 * 213.00903 * 12 11 9 35 35 H 1.08995 * 109.47476 * 333.00773 * 12 11 9 36 36 H 1.08996 * 109.46994 * 209.99755 * 13 11 9 37 37 H 1.09002 * 109.46847 * 329.99805 * 13 11 9 38 38 H 1.08996 * 113.61205 * 254.53189 * 16 14 13 39 39 H 1.09000 * 113.60952 * 25.42566 * 16 14 13 40 40 H 0.96699 * 114.00295 * 277.60444 * 19 17 16 41 41 H 1.09007 * 113.61767 * 334.56835 * 20 14 13 42 42 H 1.09001 * 113.61883 * 105.38470 * 20 14 13 43 43 H 1.07990 * 120.02127 * 180.30082 * 21 8 5 44 44 H 1.09002 * 109.46864 * 134.98026 * 23 22 21 45 45 H 0.96698 * 113.99893 * 180.02562 * 24 23 22 46 46 H 1.48499 * 110.00267 * 299.99772 * 25 23 22 47 47 H 1.48502 * 110.00375 * 61.31861 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2870 2.3705 0.0005 5 6 1.9119 3.6059 0.0011 6 8 1.1721 4.7430 0.0021 7 6 -0.2490 4.5924 0.0021 8 6 3.3130 3.6775 -0.0053 9 6 3.9864 4.9876 -0.0109 10 8 3.6534 5.8391 -0.8129 11 7 4.9718 5.2426 0.8726 12 6 5.4393 4.1862 1.7735 13 6 5.5754 6.5762 0.9320 14 6 4.8043 7.4408 1.9313 15 1 3.7235 7.3588 1.8164 16 6 5.2835 7.2797 3.3837 17 6 5.1012 8.8015 3.5280 18 1 4.1013 9.0914 3.8511 19 8 6.1343 9.4356 4.2845 20 6 5.3073 8.8921 2.0068 21 6 4.0678 2.5001 0.0000 22 6 3.4353 1.2787 0.0000 23 6 4.2504 0.0112 0.0004 24 8 4.2147 -0.5785 -1.3007 25 14 6.0132 0.4067 0.4549 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2086 2.3111 0.0014 30 1 -0.7186 5.5761 0.0025 31 1 -0.5561 4.0424 0.8916 32 1 -0.5562 4.0439 -0.8884 33 1 6.2888 3.6735 1.3224 34 1 5.7432 4.6267 2.7232 35 1 4.6337 3.4724 1.9455 36 1 6.6141 6.4909 1.2509 37 1 5.5349 7.0375 -0.0547 38 1 4.6041 6.6966 4.0054 39 1 6.3203 6.9542 3.4677 40 1 6.0102 9.3820 5.2420 41 1 6.3508 9.0084 1.7137 42 1 4.6480 9.6088 1.5173 43 1 5.1466 2.5499 0.0000 44 1 3.8357 -0.6872 0.7273 45 1 4.7191 -1.4002 -1.3741 46 1 6.5901 1.3581 -0.5285 47 1 6.0672 0.9912 1.8190 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:13:11 Heat of formation + Delta-G solvation = -118.525523 kcal Electronic energy + Delta-G solvation = -30965.691623 eV Core-core repulsion = 26696.775345 eV Total energy + Delta-G solvation = -4268.916278 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.30468 -41.09349 -40.24871 -39.85329 -38.41876 -37.15090 -36.94103 -35.68428 -32.50320 -32.17498 -29.66188 -29.07293 -28.29249 -27.57889 -26.73410 -26.07011 -24.71075 -23.50680 -22.66384 -20.78429 -20.55933 -19.91707 -18.65478 -18.54974 -18.43721 -18.20835 -17.62501 -17.22956 -16.99568 -16.77675 -16.56841 -16.25143 -16.14571 -15.92574 -15.62417 -15.29417 -15.10396 -14.83035 -14.37553 -14.30196 -14.14208 -13.86181 -13.85085 -13.63684 -13.47737 -13.32627 -13.19004 -12.83318 -12.78182 -12.64324 -12.60461 -12.44978 -12.18143 -11.94498 -11.86258 -11.72470 -11.33882 -11.12858 -10.81223 -10.23145 -10.03110 -9.86120 -9.30507 -4.95232 -0.30035 -0.07749 1.28921 1.42307 1.63868 1.78927 1.93493 1.97500 2.06966 2.27091 3.19703 3.24757 3.36319 3.46697 3.50196 3.54690 3.63837 3.75442 3.88859 3.90289 3.93897 4.06285 4.06786 4.14047 4.17885 4.20077 4.21800 4.23043 4.27795 4.36540 4.41303 4.53718 4.57818 4.61746 4.64458 4.66981 4.71236 4.72924 4.75657 4.80845 4.92824 4.93572 5.06654 5.15503 5.27455 5.43620 5.91175 6.09051 6.20205 6.84707 6.93366 6.95226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.306 6.306 3 C 0.213 3.787 4 C -0.302 4.302 5 C 0.212 3.788 6 O -0.320 6.320 7 C 0.013 3.987 8 C -0.223 4.223 9 C 0.567 3.433 10 O -0.566 6.566 11 N -0.607 5.607 12 C 0.065 3.935 13 C 0.126 3.874 14 C -0.119 4.119 15 H 0.076 0.924 16 C -0.151 4.151 17 C 0.077 3.923 18 H 0.089 0.911 19 O -0.578 6.578 20 C -0.126 4.126 21 C -0.019 4.019 22 C -0.165 4.165 23 C -0.066 4.066 24 O -0.565 6.565 25 Si 0.755 3.245 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.171 0.829 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.395 0.605 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.088 0.912 45 H 0.400 0.600 46 H -0.292 1.292 47 H -0.259 1.259 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -7.327 6.344 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.218 6.218 3 C 0.165 3.835 4 C -0.321 4.321 5 C 0.164 3.836 6 O -0.232 6.232 7 C -0.081 4.081 8 C -0.227 4.227 9 C 0.356 3.644 10 O -0.445 6.445 11 N -0.339 5.339 12 C -0.078 4.078 13 C 0.004 3.996 14 C -0.138 4.138 15 H 0.095 0.905 16 C -0.189 4.189 17 C 0.018 3.982 18 H 0.107 0.893 19 O -0.387 6.387 20 C -0.164 4.164 21 C -0.038 4.038 22 C -0.166 4.166 23 C -0.175 4.175 24 O -0.375 6.375 25 Si 0.658 3.342 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.188 0.812 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.245 0.755 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.158 0.842 44 H 0.106 0.894 45 H 0.251 0.749 46 H -0.220 1.220 47 H -0.184 1.184 Dipole moment (debyes) X Y Z Total from point charges -1.337 -5.626 5.466 7.957 hybrid contribution -1.419 0.252 0.174 1.452 sum -2.756 -5.373 5.639 8.262 Atomic orbital electron populations 1.23515 0.75901 1.06348 1.02574 1.86121 1.23733 1.25460 1.86448 1.18795 0.91256 0.84554 0.88878 1.21448 1.02283 0.90359 1.18001 1.18740 0.89475 0.85804 0.89622 1.86180 1.21564 1.28747 1.86697 1.23507 0.75741 1.05937 1.02935 1.18956 0.91429 0.93643 1.18660 1.18187 0.79333 0.86651 0.80202 1.90770 1.65041 1.48876 1.39857 1.47810 1.36491 1.13066 1.36541 1.22246 1.00134 0.90779 0.94598 1.21551 0.97089 0.80962 0.99976 1.22565 0.99739 0.95571 0.95970 0.90545 1.23723 1.02589 0.97221 0.95349 1.23353 0.91181 0.91853 0.91805 0.89319 1.86487 1.48851 1.79619 1.23692 1.23075 1.02601 0.95778 0.94905 1.20835 0.99246 0.89926 0.93749 1.18788 0.91271 0.94731 1.11856 1.24657 1.09866 0.93781 0.89166 1.86469 1.77154 1.44706 1.29142 0.94394 0.76244 0.86126 0.77433 0.85696 0.90860 0.91719 0.81194 0.86477 0.90353 0.91206 0.92011 0.88263 0.90603 0.87864 0.91312 0.90584 0.88550 0.75510 0.89066 0.91003 0.84213 0.89440 0.74892 1.21960 1.18423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 2 O -0.31 -0.86 9.80 -90.32 -0.89 -1.74 16 3 C 0.21 1.17 6.67 22.61 0.15 1.32 16 4 C -0.30 -1.26 8.01 22.43 0.18 -1.08 16 5 C 0.21 1.98 6.67 22.82 0.15 2.13 16 6 O -0.32 -3.10 9.55 -81.17 -0.78 -3.88 16 7 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 8 C -0.22 -2.49 4.90 -20.00 -0.10 -2.59 16 9 C 0.57 7.92 6.93 86.63 0.60 8.52 16 10 O -0.57 -12.33 16.10 4.46 0.07 -12.25 16 11 N -0.61 -4.23 2.87 -850.80 -2.44 -6.68 16 12 C 0.06 0.04 9.09 127.77 1.16 1.20 16 13 C 0.13 0.61 5.28 86.38 0.46 1.07 16 14 C -0.12 -0.40 3.96 -10.27 -0.04 -0.44 16 15 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 16 C -0.15 0.11 6.92 31.18 0.22 0.33 16 17 C 0.08 0.08 5.21 31.18 0.16 0.24 16 18 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 19 O -0.58 -1.35 13.68 -148.98 -2.04 -3.38 16 20 C -0.13 -0.40 7.47 31.12 0.23 -0.17 16 21 C -0.02 -0.15 6.21 22.50 0.14 -0.01 16 22 C -0.17 -1.05 5.30 -19.80 -0.11 -1.16 16 23 C -0.07 -0.06 2.36 71.24 0.17 0.11 16 24 O -0.57 -1.22 12.86 -148.98 -1.92 -3.13 16 25 Si 0.75 -2.04 30.19 68.60 2.07 0.03 16 26 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 27 H 0.07 -0.59 7.65 -2.39 -0.02 -0.61 16 28 H 0.06 -0.39 7.65 -2.39 -0.02 -0.41 16 29 H 0.17 -0.38 4.50 -2.91 -0.01 -0.39 16 30 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.08 -0.41 7.66 -2.39 -0.02 -0.43 16 32 H 0.07 -0.22 7.66 -2.39 -0.02 -0.24 16 33 H 0.06 -0.05 7.56 -2.39 -0.02 -0.07 16 34 H 0.10 -0.38 7.53 -2.38 -0.02 -0.40 16 35 H 0.08 0.09 5.68 -2.39 -0.01 0.08 16 36 H 0.10 0.01 7.80 -2.39 -0.02 -0.01 16 37 H 0.07 0.65 7.36 -2.39 -0.02 0.63 16 38 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.10 -0.16 7.92 -2.39 -0.02 -0.18 16 40 H 0.39 -2.41 9.12 -74.06 -0.68 -3.09 16 41 H 0.09 0.32 8.10 -2.38 -0.02 0.30 16 42 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.14 0.88 3.39 -2.92 -0.01 0.87 16 44 H 0.09 -0.18 7.82 -2.39 -0.02 -0.20 16 45 H 0.40 -3.43 8.74 -74.06 -0.65 -4.08 16 46 H -0.29 -1.31 6.74 99.48 0.67 -0.64 16 47 H -0.26 0.26 7.11 99.48 0.71 0.97 16 Total: 0.00 -27.68 378.47 -0.62 -28.30 By element: Atomic # 1 Polarization: -8.58 SS G_CDS: -0.30 Total: -8.88 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.60 Total: 11.62 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -2.44 Total: -6.68 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -5.54 Total: -24.39 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.07 Total: 0.03 kcal Total: -27.68 -0.62 -28.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.228 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds