Wall clock time and date at job start Sat Mar 6 2021 17:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36412 * 125.80453 * 2 1 4 4 C 1.47381 * 127.19158 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99861 * 34.77023 * 4 3 2 6 6 N 1.34780 * 119.99861 * 214.76430 * 4 3 2 7 7 C 1.46501 * 120.00281 * 355.56479 * 6 4 3 8 8 C 1.46498 * 119.99521 * 175.55760 * 6 4 3 9 9 C 1.53001 * 109.46773 * 90.00461 * 8 6 4 10 10 H 1.08995 * 112.85169 * 316.19357 * 9 8 6 11 11 C 1.53958 * 113.74519 * 87.40136 * 9 8 6 12 12 C 1.53783 * 87.02214 * 139.94062 * 11 9 8 13 13 H 1.08998 * 113.61317 * 89.22385 * 12 11 9 14 14 O 1.42894 * 113.61647 * 220.05042 * 12 11 9 15 15 C 1.53782 * 87.17240 * 334.64004 * 12 11 9 16 16 C 1.47026 * 105.61683 * 179.73687 * 3 2 1 17 17 C 1.34181 * 105.95166 * 0.25438 * 16 3 2 18 18 C 1.50700 * 125.43644 * 180.02562 * 17 16 3 19 19 O 1.42902 * 109.47042 * 65.00470 * 18 17 16 20 20 Si 1.86299 * 109.47247 * 185.00376 * 18 17 16 21 21 O 1.33659 * 125.79969 * 180.18294 * 2 1 3 22 22 H 1.08998 * 109.46793 * 90.00133 * 1 2 3 23 23 H 1.09000 * 109.47296 * 210.00288 * 1 2 3 24 24 H 1.09006 * 109.47088 * 330.00387 * 1 2 3 25 25 H 1.09002 * 109.46502 * 275.35722 * 7 6 4 26 26 H 1.09004 * 109.47003 * 35.35619 * 7 6 4 27 27 H 1.08997 * 109.46906 * 155.35876 * 7 6 4 28 28 H 1.09001 * 109.47620 * 330.00690 * 8 6 4 29 29 H 1.08999 * 109.46802 * 210.00211 * 8 6 4 30 30 H 1.09006 * 113.61166 * 25.41989 * 11 9 8 31 31 H 1.09000 * 113.66534 * 254.47371 * 11 9 8 32 32 H 0.96703 * 114.00072 * 279.13716 * 14 12 11 33 33 H 1.08997 * 113.61745 * 139.93543 * 15 12 11 34 34 H 1.09001 * 113.61414 * 270.75870 * 15 12 11 35 35 H 1.07996 * 127.02182 * 180.24310 * 16 3 2 36 36 H 1.09006 * 109.47324 * 305.00415 * 18 17 16 37 37 H 0.96696 * 113.99949 * 180.02562 * 19 18 17 38 38 H 1.48502 * 109.99981 * 300.00256 * 20 18 17 39 39 H 1.48507 * 109.99653 * 61.31988 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8740 2.5157 -0.0005 5 8 0.8687 2.8443 0.5997 6 7 2.5942 3.4404 -0.6661 7 6 3.8564 3.0636 -1.3073 8 6 2.1146 4.8222 -0.7484 9 6 2.6594 5.6224 0.4364 10 1 2.5927 5.0805 1.3797 11 6 4.0448 6.2432 0.1807 12 6 3.5339 7.4905 0.9211 13 1 3.7057 7.4605 1.9970 14 8 3.9520 8.7206 0.3263 15 6 2.1157 7.0590 0.5116 16 6 3.6849 0.5990 0.0065 17 6 3.5859 -0.7392 0.0040 18 6 4.7458 -1.7012 0.0092 19 8 5.4689 -1.5689 1.2347 20 14 4.1077 -3.4443 -0.1501 21 8 2.2888 -1.0841 -0.0035 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 4.6627 3.1063 -0.5750 26 1 3.7758 2.0501 -1.7005 27 1 4.0696 3.7541 -2.1233 28 1 1.0249 4.8308 -0.7224 29 1 2.4594 5.2715 -1.6796 30 1 4.2570 6.4179 -0.8742 31 1 4.8562 5.7305 0.6974 32 1 4.8518 8.9854 0.5616 33 1 1.3719 7.2039 1.2950 34 1 1.7990 7.4583 -0.4519 35 1 4.5928 1.1838 0.0120 36 1 5.4066 -1.4782 -0.8285 37 1 6.2313 -2.1593 1.3072 38 1 3.2054 -3.7607 0.9861 39 1 3.3810 -3.6035 -1.4354 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12312124_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:14:42 Heat of formation + Delta-G solvation = -62.484257 kcal Electronic energy + Delta-G solvation = -22661.958437 eV Core-core repulsion = 19153.455861 eV Total energy + Delta-G solvation = -3508.502576 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.75768 -41.01989 -39.84072 -38.02140 -36.82602 -35.68372 -34.11911 -33.25008 -30.07961 -29.21742 -27.71120 -26.70455 -25.48783 -24.37963 -23.16594 -21.87005 -20.55191 -19.58308 -18.82227 -18.49162 -18.15560 -17.50349 -17.12507 -17.05830 -16.54961 -16.10531 -15.84964 -15.60206 -15.09556 -14.77602 -14.51041 -14.44489 -14.18943 -14.12313 -13.93094 -13.73722 -13.47271 -13.38540 -13.12230 -13.04330 -12.73458 -12.57119 -12.34531 -12.11230 -11.76249 -11.29148 -11.03686 -10.78722 -10.69052 -10.56522 -9.73187 -9.49850 -5.15205 0.33760 0.87395 1.08098 1.49900 1.62039 1.94577 1.98080 2.15341 3.18039 3.23626 3.47158 3.51557 3.56909 3.64355 3.73700 3.80944 3.92623 4.06502 4.09816 4.14919 4.26955 4.28975 4.41686 4.46948 4.47152 4.56675 4.65717 4.68221 4.74850 4.75372 4.78364 4.83492 4.97940 5.08137 5.11936 5.22052 5.34557 5.55822 5.94628 6.32965 6.39798 6.69302 7.18235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.084 3.916 3 C -0.245 4.245 4 C 0.594 3.406 5 O -0.533 6.533 6 N -0.607 5.607 7 C 0.076 3.924 8 C 0.130 3.870 9 C -0.123 4.123 10 H 0.095 0.905 11 C -0.164 4.164 12 C 0.075 3.925 13 H 0.081 0.919 14 O -0.561 6.561 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.016 4.016 18 C -0.034 4.034 19 O -0.543 6.543 20 Si 0.708 3.292 21 O -0.175 6.175 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.378 0.622 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.391 0.609 38 H -0.249 1.249 39 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -2.869 -2.774 7.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 C -0.250 4.250 4 C 0.383 3.617 5 O -0.411 6.411 6 N -0.340 5.340 7 C -0.067 4.067 8 C 0.008 3.992 9 C -0.143 4.143 10 H 0.114 0.886 11 C -0.202 4.202 12 C 0.016 3.984 13 H 0.099 0.901 14 O -0.366 6.366 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.064 4.064 18 C -0.144 4.144 19 O -0.351 6.351 20 Si 0.607 3.393 21 O -0.073 6.073 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.130 0.870 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.226 0.774 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.113 0.887 37 H 0.240 0.760 38 H -0.173 1.173 39 H -0.177 1.177 Dipole moment (debyes) X Y Z Total from point charges 3.603 -3.072 -2.699 5.450 hybrid contribution 0.869 0.741 0.226 1.165 sum 4.472 -2.330 -2.473 5.617 Atomic orbital electron populations 1.20692 0.83544 1.05860 1.04487 1.22814 0.93930 0.82749 0.97331 1.21071 0.93386 0.93762 1.16751 1.17231 0.82606 0.83676 0.78174 1.90786 1.26154 1.81181 1.43014 1.47621 1.23219 1.09303 1.53826 1.22064 0.85014 1.02006 0.97639 1.21511 1.00627 0.79545 0.97549 1.22753 0.96467 0.95091 0.99990 0.88634 1.23801 0.97066 0.97396 1.01912 1.23324 0.96189 0.82810 0.96035 0.90120 1.86531 1.35961 1.40306 1.73820 1.23046 0.95628 0.94031 1.03165 1.22711 0.96516 0.92992 1.03940 1.21079 0.82113 0.94192 1.08973 1.23788 0.91788 1.08312 0.90502 1.86475 1.46231 1.66283 1.36095 0.95300 0.85218 0.77429 0.81328 1.83678 1.16461 1.35302 1.71860 0.89233 0.89752 0.87005 0.92407 0.90532 0.90757 0.89386 0.89984 0.89204 0.91385 0.77422 0.90500 0.88914 0.81976 0.88716 0.76038 1.17325 1.17700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 10.21 36.00 0.37 0.25 16 2 C 0.08 0.31 7.37 -34.97 -0.26 0.05 16 3 C -0.25 -0.90 5.54 -103.27 -0.57 -1.47 16 4 C 0.59 2.47 7.49 -12.54 -0.09 2.38 16 5 O -0.53 -3.67 15.07 5.27 0.08 -3.59 16 6 N -0.61 -0.83 2.87 -182.86 -0.53 -1.35 16 7 C 0.08 -0.11 9.07 59.85 0.54 0.44 16 8 C 0.13 0.08 5.26 -4.04 -0.02 0.06 16 9 C -0.12 -0.07 3.96 -89.71 -0.36 -0.42 16 10 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 11 C -0.16 0.09 7.48 -25.82 -0.19 -0.10 16 12 C 0.08 0.02 5.21 -25.92 -0.13 -0.11 16 13 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 14 O -0.56 -0.69 13.67 -35.23 -0.48 -1.17 16 15 C -0.12 -0.08 7.47 -25.92 -0.19 -0.28 16 16 C -0.14 -0.31 8.66 -37.45 -0.32 -0.63 16 17 C -0.02 -0.04 6.22 -35.74 -0.22 -0.26 16 18 C -0.03 0.03 2.96 36.01 0.11 0.14 16 19 O -0.54 0.40 12.86 -35.23 -0.45 -0.05 16 20 Si 0.71 -0.88 32.09 -169.99 -5.46 -6.34 16 21 O -0.18 -0.72 8.90 7.65 0.07 -0.66 16 22 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 23 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 24 H 0.11 0.27 6.55 -51.93 -0.34 -0.07 16 25 H 0.06 -0.12 7.37 -51.93 -0.38 -0.50 16 26 H 0.08 -0.10 5.81 -51.93 -0.30 -0.40 16 27 H 0.07 -0.21 7.83 -51.93 -0.41 -0.62 16 28 H 0.09 0.17 7.49 -51.93 -0.39 -0.22 16 29 H 0.08 -0.09 7.57 -51.93 -0.39 -0.48 16 30 H 0.09 -0.06 7.91 -51.93 -0.41 -0.47 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.38 -1.06 9.12 45.56 0.42 -0.65 16 33 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.09 0.08 8.10 -51.93 -0.42 -0.35 16 35 H 0.16 0.00 6.39 -52.49 -0.34 -0.34 16 36 H 0.10 -0.34 7.96 -51.93 -0.41 -0.76 16 37 H 0.39 -2.45 8.74 45.56 0.40 -2.05 16 38 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 39 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 LS Contribution 326.27 15.07 4.92 4.92 Total: 0.00 -9.89 326.27 -7.92 -17.80 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -4.71 Total: -9.59 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.35 Total: 0.03 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -0.53 Total: -1.35 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.79 Total: -5.47 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.46 Total: -6.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -9.89 -7.92 -17.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.682 kcal (2) G-P(sol) polarization free energy of solvation -9.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds