Wall clock time and date at job start Sat Mar 6 2021 17:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36412 * 125.80453 * 2 1 4 4 C 1.47381 * 127.19158 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99861 * 34.77023 * 4 3 2 6 6 N 1.34780 * 119.99861 * 214.76430 * 4 3 2 7 7 C 1.46501 * 120.00281 * 355.56479 * 6 4 3 8 8 C 1.46498 * 119.99521 * 175.55760 * 6 4 3 9 9 C 1.53001 * 109.46773 * 90.00461 * 8 6 4 10 10 H 1.08995 * 112.85169 * 316.19357 * 9 8 6 11 11 C 1.53958 * 113.74519 * 87.40136 * 9 8 6 12 12 C 1.53783 * 87.02214 * 139.94062 * 11 9 8 13 13 H 1.08998 * 113.61317 * 89.22385 * 12 11 9 14 14 O 1.42894 * 113.61647 * 220.05042 * 12 11 9 15 15 C 1.53782 * 87.17240 * 334.64004 * 12 11 9 16 16 C 1.47026 * 105.61683 * 179.73687 * 3 2 1 17 17 C 1.34181 * 105.95166 * 0.25438 * 16 3 2 18 18 C 1.50700 * 125.43644 * 180.02562 * 17 16 3 19 19 O 1.42902 * 109.47042 * 65.00470 * 18 17 16 20 20 Si 1.86299 * 109.47247 * 185.00376 * 18 17 16 21 21 O 1.33659 * 125.79969 * 180.18294 * 2 1 3 22 22 H 1.08998 * 109.46793 * 90.00133 * 1 2 3 23 23 H 1.09000 * 109.47296 * 210.00288 * 1 2 3 24 24 H 1.09006 * 109.47088 * 330.00387 * 1 2 3 25 25 H 1.09002 * 109.46502 * 275.35722 * 7 6 4 26 26 H 1.09004 * 109.47003 * 35.35619 * 7 6 4 27 27 H 1.08997 * 109.46906 * 155.35876 * 7 6 4 28 28 H 1.09001 * 109.47620 * 330.00690 * 8 6 4 29 29 H 1.08999 * 109.46802 * 210.00211 * 8 6 4 30 30 H 1.09006 * 113.61166 * 25.41989 * 11 9 8 31 31 H 1.09000 * 113.66534 * 254.47371 * 11 9 8 32 32 H 0.96703 * 114.00072 * 279.13716 * 14 12 11 33 33 H 1.08997 * 113.61745 * 139.93543 * 15 12 11 34 34 H 1.09001 * 113.61414 * 270.75870 * 15 12 11 35 35 H 1.07996 * 127.02182 * 180.24310 * 16 3 2 36 36 H 1.09006 * 109.47324 * 305.00415 * 18 17 16 37 37 H 0.96696 * 113.99949 * 180.02562 * 19 18 17 38 38 H 1.48502 * 109.99981 * 300.00256 * 20 18 17 39 39 H 1.48507 * 109.99653 * 61.31988 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8740 2.5157 -0.0005 5 8 0.8687 2.8443 0.5997 6 7 2.5942 3.4404 -0.6661 7 6 3.8564 3.0636 -1.3073 8 6 2.1146 4.8222 -0.7484 9 6 2.6594 5.6224 0.4364 10 1 2.5927 5.0805 1.3797 11 6 4.0448 6.2432 0.1807 12 6 3.5339 7.4905 0.9211 13 1 3.7057 7.4605 1.9970 14 8 3.9520 8.7206 0.3263 15 6 2.1157 7.0590 0.5116 16 6 3.6849 0.5990 0.0065 17 6 3.5859 -0.7392 0.0040 18 6 4.7458 -1.7012 0.0092 19 8 5.4689 -1.5689 1.2347 20 14 4.1077 -3.4443 -0.1501 21 8 2.2888 -1.0841 -0.0035 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 4.6627 3.1063 -0.5750 26 1 3.7758 2.0501 -1.7005 27 1 4.0696 3.7541 -2.1233 28 1 1.0249 4.8308 -0.7224 29 1 2.4594 5.2715 -1.6796 30 1 4.2570 6.4179 -0.8742 31 1 4.8562 5.7305 0.6974 32 1 4.8518 8.9854 0.5616 33 1 1.3719 7.2039 1.2950 34 1 1.7990 7.4583 -0.4519 35 1 4.5928 1.1838 0.0120 36 1 5.4066 -1.4782 -0.8285 37 1 6.2313 -2.1593 1.3072 38 1 3.2054 -3.7607 0.9861 39 1 3.3810 -3.6035 -1.4354 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:14:41 Heat of formation + Delta-G solvation = -65.462944 kcal Electronic energy + Delta-G solvation = -22662.087603 eV Core-core repulsion = 19153.455861 eV Total energy + Delta-G solvation = -3508.631742 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.93733 -41.15813 -39.96035 -37.90890 -36.96638 -35.76205 -34.29882 -33.35379 -30.12804 -29.24354 -27.76587 -26.70897 -25.53095 -24.49705 -23.28715 -21.99664 -20.58034 -19.74212 -18.76396 -18.51748 -18.25982 -17.65847 -17.23871 -17.19431 -16.62168 -16.19512 -15.84311 -15.63879 -15.14654 -14.85238 -14.59018 -14.52562 -14.29829 -14.21568 -14.02947 -13.84052 -13.46428 -13.35567 -13.18788 -13.05192 -12.76055 -12.62014 -12.40939 -12.21708 -11.79122 -11.31489 -11.27916 -10.88802 -10.79972 -10.47231 -9.87183 -9.62550 -5.09078 0.12203 0.74133 1.15963 1.40451 1.63326 1.80793 1.95715 2.01527 3.14223 3.27647 3.41715 3.52403 3.58373 3.63542 3.66752 3.78293 3.92664 4.02273 4.13748 4.22613 4.26094 4.31518 4.36122 4.39588 4.49866 4.56087 4.58930 4.65685 4.73693 4.77399 4.78291 4.83207 4.95720 4.97736 5.07853 5.12244 5.31971 5.49450 5.77364 6.18557 6.84151 6.85972 6.95555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.066 3.934 3 C -0.259 4.259 4 C 0.587 3.413 5 O -0.573 6.573 6 N -0.601 5.601 7 C 0.069 3.931 8 C 0.129 3.871 9 C -0.119 4.119 10 H 0.075 0.925 11 C -0.149 4.149 12 C 0.073 3.927 13 H 0.086 0.914 14 O -0.579 6.579 15 C -0.126 4.126 16 C -0.139 4.139 17 C -0.036 4.036 18 C -0.035 4.035 19 O -0.561 6.561 20 Si 0.805 3.195 21 O -0.192 6.192 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.185 0.815 36 H 0.134 0.866 37 H 0.414 0.586 38 H -0.312 1.312 39 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 -2.690 -3.664 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.263 4.263 4 C 0.377 3.623 5 O -0.454 6.454 6 N -0.331 5.331 7 C -0.072 4.072 8 C 0.007 3.993 9 C -0.139 4.139 10 H 0.093 0.907 11 C -0.186 4.186 12 C 0.014 3.986 13 H 0.104 0.896 14 O -0.388 6.388 15 C -0.164 4.164 16 C -0.158 4.158 17 C -0.083 4.083 18 C -0.144 4.144 19 O -0.373 6.373 20 Si 0.711 3.289 21 O -0.091 6.091 22 H 0.122 0.878 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.202 0.798 36 H 0.151 0.849 37 H 0.268 0.732 38 H -0.241 1.241 39 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges 5.930 -2.885 -3.608 7.518 hybrid contribution 0.147 0.681 0.525 0.872 sum 6.077 -2.205 -3.083 7.162 Atomic orbital electron populations 1.20706 0.82687 1.05595 1.05362 1.23202 0.94814 0.82944 0.97702 1.21226 0.94470 0.93525 1.17096 1.17428 0.82425 0.84302 0.78164 1.90757 1.27910 1.81804 1.44946 1.47713 1.23672 1.09044 1.52711 1.22285 0.83798 1.02670 0.98470 1.21577 0.99716 0.79359 0.98639 1.22604 0.97617 0.94683 0.98961 0.90700 1.23706 0.96261 0.96374 1.02299 1.23358 0.95745 0.83020 0.96449 0.89620 1.86485 1.37507 1.40611 1.74148 1.23078 0.96102 0.94298 1.02958 1.22951 0.96430 0.92996 1.03416 1.21886 0.82296 0.95447 1.08717 1.23967 0.91522 1.07054 0.91885 1.86421 1.47455 1.67371 1.36088 0.94394 0.82925 0.75714 0.75840 1.83689 1.17452 1.35748 1.72198 0.87774 0.88799 0.88347 0.91161 0.90487 0.88602 0.91269 0.87659 0.88421 0.90620 0.75538 0.91217 0.88968 0.79782 0.84913 0.73237 1.24074 1.21970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.21 71.24 0.73 0.33 16 2 C 0.07 0.59 7.37 25.26 0.19 0.77 16 3 C -0.26 -2.17 5.54 -18.99 -0.11 -2.27 16 4 C 0.59 5.68 7.49 86.65 0.65 6.33 16 5 O -0.57 -9.33 15.07 -4.07 -0.06 -9.39 16 6 N -0.60 -1.69 2.87 -850.70 -2.44 -4.13 16 7 C 0.07 -0.30 9.07 127.77 1.16 0.86 16 8 C 0.13 0.19 5.26 86.38 0.45 0.65 16 9 C -0.12 -0.17 3.96 -10.20 -0.04 -0.21 16 10 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 11 C -0.15 0.33 7.48 31.18 0.23 0.56 16 12 C 0.07 0.02 5.21 31.12 0.16 0.18 16 13 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 14 O -0.58 -1.03 13.67 -148.98 -2.04 -3.07 16 15 C -0.13 -0.25 7.47 31.12 0.23 -0.02 16 16 C -0.14 -0.55 8.66 23.65 0.20 -0.34 16 17 C -0.04 -0.19 6.22 24.76 0.15 -0.03 16 18 C -0.03 0.11 2.96 71.24 0.21 0.32 16 19 O -0.56 1.76 12.86 -148.98 -1.92 -0.16 16 20 Si 0.80 -1.92 32.09 68.60 2.20 0.28 16 21 O -0.19 -1.83 8.90 4.44 0.04 -1.79 16 22 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 23 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.10 0.73 6.55 -2.38 -0.02 0.72 16 25 H 0.07 -0.44 7.37 -2.39 -0.02 -0.46 16 26 H 0.08 -0.29 5.81 -2.38 -0.01 -0.30 16 27 H 0.10 -0.79 7.83 -2.39 -0.02 -0.81 16 28 H 0.07 0.38 7.49 -2.39 -0.02 0.36 16 29 H 0.11 -0.35 7.57 -2.39 -0.02 -0.36 16 30 H 0.10 -0.33 7.91 -2.38 -0.02 -0.35 16 31 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.39 -2.57 9.12 -74.06 -0.68 -3.25 16 33 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.09 0.19 8.10 -2.39 -0.02 0.17 16 35 H 0.19 -0.30 6.39 -2.91 -0.02 -0.32 16 36 H 0.13 -1.38 7.96 -2.38 -0.02 -1.40 16 37 H 0.41 -6.13 8.74 -74.06 -0.65 -6.77 16 38 H -0.31 -2.52 7.11 99.48 0.71 -1.81 16 39 H -0.29 -1.18 7.11 99.48 0.71 -0.47 16 Total: 0.00 -25.52 326.27 -0.19 -25.71 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: -0.20 Total: -14.59 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 4.23 Total: 7.13 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -2.44 Total: -4.13 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -3.97 Total: -14.40 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.20 Total: 0.28 kcal Total: -25.52 -0.19 -25.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.749 kcal (2) G-P(sol) polarization free energy of solvation -25.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds