Wall clock time and date at job start Sat Mar 6 2021 17:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99813 * 2 1 4 4 C 1.52996 * 109.47423 * 270.00343 * 3 2 1 5 5 H 1.09000 * 112.84964 * 43.80104 * 4 3 2 6 6 C 1.53783 * 113.61942 * 175.00090 * 4 3 2 7 7 C 1.53783 * 87.08205 * 139.97905 * 6 4 3 8 8 H 1.08998 * 113.61018 * 89.20090 * 7 6 4 9 9 O 1.42899 * 113.61410 * 220.01793 * 7 6 4 10 10 C 1.53776 * 87.08248 * 334.56851 * 7 6 4 11 11 C 1.34779 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.21610 * 119.99690 * 180.15084 * 11 2 1 13 13 C 1.47371 * 120.00163 * 0.15205 * 11 2 1 14 14 C 1.36411 * 127.19639 * 170.28713 * 13 11 2 15 15 O 1.33654 * 108.40235 * 180.24550 * 14 13 11 16 16 C 1.34212 * 110.90404 * 359.58890 * 15 14 13 17 17 C 1.50699 * 125.43905 * 180.16528 * 16 15 14 18 18 O 1.42898 * 109.47674 * 245.28830 * 17 16 15 19 19 Si 1.86301 * 109.46899 * 5.29225 * 17 16 15 20 20 C 1.34184 * 109.12660 * 0.41869 * 16 15 14 21 21 H 1.09000 * 109.46539 * 263.98384 * 1 2 3 22 22 H 1.08996 * 109.47200 * 23.98594 * 1 2 3 23 23 H 1.08995 * 109.46870 * 143.99147 * 1 2 3 24 24 H 1.09005 * 109.47384 * 30.00518 * 3 2 1 25 25 H 1.09007 * 109.47389 * 150.00368 * 3 2 1 26 26 H 1.08997 * 113.61399 * 254.52976 * 6 4 3 27 27 H 1.09004 * 113.60955 * 25.34575 * 6 4 3 28 28 H 0.96699 * 114.00024 * 180.02562 * 9 7 6 29 29 H 1.09001 * 113.61759 * 270.88188 * 10 7 6 30 30 H 1.08997 * 113.61497 * 139.98244 * 10 7 6 31 31 H 1.08007 * 125.79727 * 359.97438 * 14 13 11 32 32 H 1.09002 * 109.46959 * 125.28497 * 17 16 15 33 33 H 0.96706 * 113.99692 * 59.99737 * 18 17 16 34 34 H 1.48498 * 110.00195 * 58.67761 * 19 17 16 35 35 H 1.48501 * 110.00102 * 179.97438 * 19 17 16 36 36 H 1.08001 * 127.02397 * 179.77809 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.5791 1.5884 -2.0831 6 6 3.1104 3.0959 -1.5554 7 6 3.9634 2.5111 -2.6935 8 1 3.5046 2.6086 -3.6774 9 8 5.3245 2.9458 -2.6702 10 6 3.7453 1.1344 -2.0438 11 6 2.1389 -1.1672 -0.0005 12 8 3.3550 -1.1671 0.0023 13 6 1.4022 -2.4435 -0.0045 14 6 1.9179 -3.6929 -0.1888 15 8 0.9168 -4.5761 -0.1254 16 6 -0.2526 -3.9589 0.1045 17 6 -1.5892 -4.6416 0.2398 18 8 -2.4372 -4.2471 -0.8407 19 14 -1.3500 -6.4887 0.1990 20 6 -0.0424 -2.6363 0.1893 21 1 -0.3632 -0.1077 1.0220 22 1 -0.3633 0.9389 -0.4177 23 1 -0.3633 -0.8313 -0.6042 24 1 1.6084 2.0284 0.5139 25 1 3.1500 1.1385 0.5138 26 1 2.4259 3.8791 -1.8809 27 1 3.6884 3.3777 -0.6752 28 1 5.8659 2.5816 -3.3839 29 1 4.4980 0.8794 -1.2978 30 1 3.5733 0.3342 -2.7636 31 1 2.9578 -3.9279 -0.3615 32 1 -2.0492 -4.3556 1.1857 33 1 -2.0898 -4.4705 -1.7151 34 1 -0.4444 -6.9080 1.2986 35 1 -2.6609 -7.1737 0.3321 36 1 -0.7831 -1.8700 0.3646 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_13456056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:15:02 Heat of formation + Delta-G solvation = -49.111804 kcal Electronic energy + Delta-G solvation = -20743.762028 eV Core-core repulsion = 17391.376944 eV Total energy + Delta-G solvation = -3352.385084 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.74737 -41.12046 -39.84705 -37.96125 -36.93150 -35.83005 -33.98117 -31.75624 -29.68822 -27.89370 -26.71452 -26.51729 -24.80397 -23.13342 -22.14513 -20.54830 -20.12555 -18.74703 -18.51194 -17.96502 -17.63746 -17.27898 -17.17772 -16.60397 -16.11072 -15.87536 -15.63585 -15.18167 -14.75953 -14.61902 -14.44136 -14.20245 -14.05122 -13.56748 -13.44779 -13.17984 -12.82243 -12.78311 -12.43210 -12.29752 -12.25201 -11.81593 -11.28467 -11.17064 -10.88083 -10.78654 -10.56912 -9.90527 -9.59334 -4.98798 0.27876 0.84487 1.18996 1.49620 1.80688 1.92997 1.95770 2.22685 3.25269 3.28249 3.42989 3.54236 3.63600 3.68787 3.81782 3.92345 3.95877 4.17086 4.23577 4.27672 4.37065 4.37798 4.46312 4.53018 4.66804 4.75408 4.80603 4.83830 4.87259 4.91208 4.98723 5.15477 5.16718 5.37799 5.52014 5.87378 6.28475 6.64727 6.83900 7.06903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.604 5.604 3 C 0.126 3.874 4 C -0.115 4.115 5 H 0.107 0.893 6 C -0.119 4.119 7 C 0.071 3.929 8 H 0.098 0.902 9 O -0.583 6.583 10 C -0.155 4.155 11 C 0.581 3.419 12 O -0.578 6.578 13 C -0.265 4.265 14 C 0.065 3.935 15 O -0.169 6.169 16 C -0.060 4.060 17 C -0.022 4.022 18 O -0.539 6.539 19 Si 0.775 3.225 20 C -0.166 4.166 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.393 0.607 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.234 0.766 32 H 0.140 0.860 33 H 0.400 0.600 34 H -0.298 1.298 35 H -0.281 1.281 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -0.345 -3.514 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.335 5.335 3 C 0.004 3.996 4 C -0.135 4.135 5 H 0.125 0.875 6 C -0.157 4.157 7 C 0.012 3.988 8 H 0.116 0.884 9 O -0.391 6.391 10 C -0.193 4.193 11 C 0.372 3.628 12 O -0.459 6.459 13 C -0.270 4.270 14 C -0.006 4.006 15 O -0.065 6.065 16 C -0.108 4.108 17 C -0.133 4.133 18 O -0.347 6.347 19 Si 0.680 3.320 20 C -0.185 4.185 21 H 0.087 0.913 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.242 0.758 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.250 0.750 32 H 0.157 0.843 33 H 0.251 0.749 34 H -0.225 1.225 35 H -0.208 1.208 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.999 -0.844 -2.113 5.492 hybrid contribution 0.573 0.325 0.018 0.659 sum -4.426 -0.518 -2.095 4.924 Atomic orbital electron populations 1.22705 0.77563 1.05437 1.03004 1.47689 1.08246 1.05163 1.72419 1.21543 0.97451 0.84401 0.96241 1.22688 0.97569 0.96180 0.97016 0.87486 1.23035 0.97646 0.96563 0.98445 1.23519 0.82479 0.93922 0.98835 0.88446 1.86482 1.22088 1.73988 1.56536 1.23583 0.98132 0.97327 1.00279 1.17575 0.86074 0.83648 0.75537 1.90783 1.14732 1.87870 1.52565 1.21467 0.94985 0.94128 1.16398 1.24817 0.93439 0.86025 0.96356 1.83734 1.15411 1.38029 1.69337 1.23066 0.87401 0.92671 1.07648 1.24424 0.83638 1.10857 0.94377 1.86536 1.45613 1.84645 1.17924 0.93293 0.78026 0.72345 0.88299 1.23562 0.94179 0.96476 1.04254 0.91267 0.88776 0.88803 0.87760 0.91886 0.88965 0.90074 0.75766 0.91378 0.92445 0.74980 0.84329 0.74914 1.22508 1.20761 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.32 8.74 127.77 1.12 0.80 16 2 N -0.60 -0.76 2.87 -850.73 -2.44 -3.20 16 3 C 0.13 0.10 5.22 86.38 0.45 0.55 16 4 C -0.12 0.03 3.96 -10.27 -0.04 -0.01 16 5 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 6 C -0.12 0.00 7.47 31.12 0.23 0.23 16 7 C 0.07 0.12 5.21 31.12 0.16 0.28 16 8 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 9 O -0.58 -2.85 13.67 -148.98 -2.04 -4.88 16 10 C -0.16 -0.65 6.89 31.12 0.21 -0.44 16 11 C 0.58 4.01 7.67 86.65 0.66 4.67 16 12 O -0.58 -8.09 15.80 -4.06 -0.06 -8.15 16 13 C -0.27 -0.79 6.08 -19.00 -0.12 -0.91 16 14 C 0.06 0.06 11.91 67.39 0.80 0.86 16 15 O -0.17 0.04 8.90 4.48 0.04 0.08 16 16 C -0.06 0.10 6.18 24.76 0.15 0.26 16 17 C -0.02 0.10 2.97 71.24 0.21 0.31 16 18 O -0.54 2.78 12.88 -148.98 -1.92 0.86 16 19 Si 0.78 -2.72 32.09 68.60 2.20 -0.52 16 20 C -0.17 0.22 8.75 23.65 0.21 0.43 16 21 H 0.07 -0.50 7.69 -2.39 -0.02 -0.52 16 22 H 0.09 -0.89 8.03 -2.39 -0.02 -0.91 16 23 H 0.09 -0.61 4.78 -2.39 -0.01 -0.62 16 24 H 0.10 -0.42 8.07 -2.38 -0.02 -0.44 16 25 H 0.06 0.40 7.12 -2.38 -0.02 0.38 16 26 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.08 0.20 8.10 -2.38 -0.02 0.18 16 28 H 0.39 -1.17 9.12 -74.06 -0.68 -1.85 16 29 H 0.07 0.69 7.75 -2.39 -0.02 0.68 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.23 -0.70 8.06 -2.91 -0.02 -0.73 16 32 H 0.14 -0.76 7.96 -2.39 -0.02 -0.78 16 33 H 0.40 -5.03 8.70 -74.05 -0.64 -5.67 16 34 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 35 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 36 H 0.19 -1.06 4.90 -2.91 -0.01 -1.08 16 Total: 0.00 -20.80 304.35 -0.33 -21.12 By element: Atomic # 1 Polarization: -12.18 SS G_CDS: -0.16 Total: -12.34 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 4.06 Total: 7.04 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -2.44 Total: -3.20 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -3.98 Total: -12.10 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.20 Total: -0.52 kcal Total: -20.80 -0.33 -21.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_13456056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.987 kcal (2) G-P(sol) polarization free energy of solvation -20.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds