Wall clock time and date at job start Sat Mar 6 2021 17:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.09003 * 112.85084 * 314.67487 * 4 3 2 6 6 C 1.53785 * 113.61112 * 85.86580 * 4 3 2 7 7 C 1.53951 * 87.02015 * 139.95471 * 6 4 3 8 8 H 1.09001 * 113.61580 * 89.19483 * 7 6 4 9 9 O 1.42898 * 113.66787 * 220.06748 * 7 6 4 10 10 C 1.53778 * 113.61487 * 183.46924 * 4 3 2 11 11 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99750 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99928 * 0.28128 * 11 2 1 14 14 O 1.42899 * 109.46876 * 179.72354 * 13 11 2 15 15 C 1.35897 * 116.99793 * 179.97438 * 14 13 11 16 16 C 1.38733 * 120.05883 * 359.72157 * 15 14 13 17 17 C 1.38148 * 119.94838 * 179.74044 * 16 15 14 18 18 C 1.38261 * 120.05294 * 0.51879 * 17 16 15 19 19 C 1.50695 * 119.94393 * 179.74167 * 18 17 16 20 20 O 1.42901 * 109.47029 * 245.01757 * 19 18 17 21 21 Si 1.86301 * 109.47321 * 5.01806 * 19 18 17 22 22 C 1.38273 * 120.11246 * 359.75574 * 18 17 16 23 23 C 1.38145 * 120.05465 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08996 * 113.61151 * 254.53205 * 6 4 3 30 30 H 1.08996 * 113.61597 * 25.43209 * 6 4 3 31 31 H 0.96701 * 114.00552 * 277.55934 * 9 7 6 32 32 H 1.08997 * 113.61796 * 334.57123 * 10 4 3 33 33 H 1.09010 * 113.60994 * 105.47836 * 10 4 3 34 34 H 1.09004 * 109.46965 * 299.72211 * 13 11 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 13 11 2 36 36 H 1.08009 * 120.02352 * 0.02562 * 16 15 14 37 37 H 1.07997 * 119.97042 * 180.22984 * 17 16 15 38 38 H 1.09004 * 109.47233 * 125.02102 * 19 18 17 39 39 H 0.96695 * 113.99887 * 60.00268 * 20 19 18 40 40 H 1.48497 * 109.99707 * 58.67971 * 21 19 18 41 41 H 1.48497 * 110.00012 * 179.97438 * 21 19 18 42 42 H 1.07994 * 119.97341 * 179.97438 * 22 18 17 43 43 H 1.07993 * 120.03029 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 2.8089 0.8988 -2.0769 6 6 1.2902 2.5078 -2.0573 7 6 2.3569 3.4116 -2.7018 8 1 2.6872 3.0668 -3.6817 9 8 2.0176 4.7996 -2.6873 10 6 3.2920 2.9940 -1.5545 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 -0.0053 14 8 2.3142 -3.5584 -0.0100 15 6 1.7949 -4.8142 -0.0151 16 6 0.4197 -4.9974 -0.0096 17 6 -0.1058 -6.2750 -0.0202 18 6 0.7375 -7.3706 -0.0254 19 6 0.1616 -8.7632 -0.0310 20 8 0.5061 -9.4260 1.1872 21 14 -1.6927 -8.6677 -0.1832 22 6 2.1085 -7.1907 -0.0251 23 6 2.6390 -5.9152 -0.0201 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 0.7043 1.9391 -2.7793 30 1 0.6729 3.0193 -1.3188 31 1 1.4297 5.0684 -3.4065 32 1 3.2230 3.6387 -0.6783 33 1 4.3199 2.8172 -1.8714 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 -0.2395 -4.1419 -0.0018 37 1 -1.1763 -6.4181 -0.0197 38 1 0.5673 -9.3207 -0.8753 39 1 0.1769 -8.9843 1.9819 40 1 -2.0637 -7.9524 -1.4305 41 1 -2.2727 -10.0347 -0.1906 42 1 2.7652 -8.0481 -0.0287 43 1 3.7098 -5.7751 -0.0195 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:15:20 Heat of formation + Delta-G solvation = -89.392111 kcal Electronic energy + Delta-G solvation = -24867.860816 eV Core-core repulsion = 21074.427669 eV Total energy + Delta-G solvation = -3793.433148 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68917 -40.95953 -40.02978 -38.98734 -37.16079 -36.87803 -35.68694 -32.45153 -31.77280 -30.74998 -28.77643 -27.18235 -26.66433 -26.16557 -24.18335 -23.43001 -22.30480 -20.63237 -20.40012 -19.56509 -18.52249 -18.29640 -17.96669 -17.59332 -17.31694 -16.82306 -16.53045 -16.30942 -15.89680 -15.86504 -15.52474 -15.14948 -14.89852 -14.65760 -14.54590 -14.32274 -14.02103 -13.76360 -13.57852 -13.48089 -13.44567 -13.30629 -13.07925 -12.76708 -12.40481 -12.24814 -12.09054 -12.05153 -11.80250 -11.75429 -11.28900 -10.99229 -10.75242 -10.39547 -10.05411 -9.75515 -9.24680 -4.98318 0.26509 0.29606 1.34788 1.38632 1.42623 1.66288 2.00261 2.44071 2.64548 3.26863 3.33230 3.52166 3.57010 3.58288 3.72285 3.79277 3.80582 3.93161 3.93839 3.96376 4.02735 4.21843 4.29889 4.30552 4.33013 4.40865 4.49377 4.60768 4.65509 4.66626 4.77111 4.79007 4.81325 4.92597 4.96337 4.99578 5.10176 5.14862 5.24331 5.32106 5.48812 5.49024 5.68872 6.15439 6.33788 6.80536 6.87334 6.99152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.604 5.604 3 C 0.127 3.873 4 C -0.119 4.119 5 H 0.077 0.923 6 C -0.147 4.147 7 C 0.071 3.929 8 H 0.086 0.914 9 O -0.580 6.580 10 C -0.130 4.130 11 C 0.506 3.494 12 O -0.574 6.574 13 C 0.040 3.960 14 O -0.322 6.322 15 C 0.120 3.880 16 C -0.199 4.199 17 C -0.073 4.073 18 C -0.162 4.162 19 C -0.075 4.075 20 O -0.559 6.559 21 Si 0.784 3.216 22 C -0.061 4.061 23 C -0.168 4.168 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.395 0.605 40 H -0.281 1.281 41 H -0.304 1.304 42 H 0.132 0.868 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 3.296 0.528 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.338 5.338 3 C 0.005 3.995 4 C -0.138 4.138 5 H 0.095 0.905 6 C -0.184 4.184 7 C 0.013 3.987 8 H 0.104 0.896 9 O -0.388 6.388 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.453 6.453 13 C -0.038 4.038 14 O -0.235 6.235 15 C 0.075 3.925 16 C -0.217 4.217 17 C -0.090 4.090 18 C -0.162 4.162 19 C -0.184 4.184 20 O -0.367 6.367 21 Si 0.690 3.310 22 C -0.080 4.080 23 C -0.187 4.187 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.245 0.755 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.119 0.881 39 H 0.245 0.755 40 H -0.208 1.208 41 H -0.233 1.233 42 H 0.150 0.850 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.027 2.755 0.182 9.440 hybrid contribution 0.764 -0.135 -0.944 1.222 sum -8.263 2.621 -0.762 8.702 Atomic orbital electron populations 1.22286 0.76243 1.05518 1.04038 1.47833 1.08830 1.04588 1.72528 1.21503 0.97549 0.84532 0.95917 1.22573 0.98132 0.96084 0.97033 0.90493 1.23698 0.96474 0.97420 1.00841 1.23415 0.96351 0.80909 0.98072 0.89585 1.86490 1.71142 1.25211 1.55990 1.23108 0.98410 0.96103 0.99221 1.20630 0.87575 0.86164 0.76196 1.90754 1.16168 1.87769 1.50575 1.22790 0.91489 0.82849 1.06629 1.86131 1.36027 1.12531 1.88819 1.19226 0.93054 0.83625 0.96603 1.21510 0.92904 0.99745 1.07589 1.21068 1.00043 0.91230 0.96648 1.20369 0.94099 0.96038 1.05710 1.25213 1.12538 0.90777 0.89890 1.86469 1.81074 1.53155 1.16009 0.93790 0.72826 0.79103 0.85318 1.20912 0.95222 0.95883 0.95936 1.20615 1.00213 0.90930 1.06897 0.90302 0.89112 0.88814 0.87643 0.91869 0.90157 0.88352 0.75536 0.89125 0.91444 0.85598 0.85872 0.81655 0.82580 0.88100 0.75512 1.20806 1.23284 0.85040 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.74 10.25 127.77 1.31 0.57 16 2 N -0.60 1.79 2.87 -846.74 -2.43 -0.64 16 3 C 0.13 -0.16 5.23 86.38 0.45 0.29 16 4 C -0.12 0.13 3.96 -10.27 -0.04 0.09 16 5 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 6 C -0.15 0.73 6.96 31.18 0.22 0.95 16 7 C 0.07 -0.10 5.21 31.18 0.16 0.06 16 8 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 9 O -0.58 -0.29 13.67 -148.98 -2.04 -2.33 16 10 C -0.13 -0.09 7.47 31.12 0.23 0.14 16 11 C 0.51 1.93 7.75 87.66 0.68 2.61 16 12 O -0.57 -8.88 16.08 16.00 0.26 -8.62 16 13 C 0.04 -0.11 3.77 71.24 0.27 0.16 16 14 O -0.32 -2.04 9.67 -73.35 -0.71 -2.75 16 15 C 0.12 0.40 6.69 22.51 0.15 0.56 16 16 C -0.20 0.66 9.04 22.37 0.20 0.86 16 17 C -0.07 0.27 8.66 22.25 0.19 0.46 16 18 C -0.16 0.01 5.35 -19.85 -0.11 -0.10 16 19 C -0.07 0.05 2.80 71.23 0.20 0.25 16 20 O -0.56 -0.27 12.83 -148.98 -1.91 -2.18 16 21 Si 0.78 -2.95 29.80 68.60 2.04 -0.90 16 22 C -0.06 -0.19 9.68 22.26 0.22 0.03 16 23 C -0.17 -0.87 9.99 22.37 0.22 -0.65 16 24 H 0.08 -1.13 8.14 -2.39 -0.02 -1.15 16 25 H 0.09 -1.25 7.54 -2.39 -0.02 -1.27 16 26 H 0.09 -1.53 6.43 -2.39 -0.02 -1.54 16 27 H 0.11 -0.61 7.80 -2.39 -0.02 -0.62 16 28 H 0.06 0.28 7.42 -2.38 -0.02 0.26 16 29 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.10 -0.60 7.92 -2.39 -0.02 -0.62 16 31 H 0.39 -3.08 9.12 -74.06 -0.68 -3.76 16 32 H 0.09 0.10 8.10 -2.39 -0.02 0.08 16 33 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.13 -1.19 7.62 -2.38 -0.02 -1.21 16 35 H 0.12 -1.14 6.93 -2.39 -0.02 -1.16 16 36 H 0.17 -1.82 6.30 -2.91 -0.02 -1.83 16 37 H 0.16 -1.50 4.90 -2.91 -0.01 -1.51 16 38 H 0.10 0.10 7.96 -2.38 -0.02 0.09 16 39 H 0.39 -3.09 8.70 -74.06 -0.64 -3.73 16 40 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 41 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 42 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.12 0.75 8.06 -2.91 -0.02 0.72 16 Total: 0.00 -27.95 355.52 -0.68 -28.63 By element: Atomic # 1 Polarization: -17.25 SS G_CDS: -0.24 Total: -17.49 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.36 Total: 6.29 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -2.43 Total: -0.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -4.40 Total: -15.88 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.04 Total: -0.90 kcal Total: -27.95 -0.68 -28.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.765 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds