Wall clock time and date at job start Sat Mar 6 2021 17:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 117.00413 * 2 1 4 4 C 1.39153 * 120.07144 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07296 * 359.97438 * 4 3 2 6 6 C 1.42907 * 117.00005 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47118 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99840 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00144 * 359.97438 * 9 7 6 11 11 C 1.46502 * 119.99831 * 179.97438 * 9 7 6 12 12 C 1.53000 * 109.47212 * 89.99608 * 11 9 7 13 13 H 1.08992 * 112.85502 * 45.33359 * 12 11 9 14 14 C 1.53782 * 113.61495 * 176.53297 * 12 11 9 15 15 C 1.53779 * 87.08550 * 139.97940 * 14 12 11 16 16 H 1.08995 * 113.61511 * 89.10985 * 15 14 12 17 17 O 1.42898 * 113.61559 * 220.02067 * 15 14 12 18 18 C 1.53788 * 113.61346 * 274.13672 * 12 11 9 19 19 C 1.38563 * 119.85224 * 180.02562 * 4 3 2 20 20 C 1.38245 * 120.00301 * 359.72280 * 19 4 3 21 21 C 1.38261 * 120.14178 * 0.54753 * 20 19 4 22 22 C 1.50699 * 119.92538 * 179.72723 * 21 20 19 23 23 O 1.42892 * 109.47249 * 119.73101 * 22 21 20 24 24 Si 1.86298 * 109.47032 * 359.72486 * 22 21 20 25 25 C 1.38242 * 120.14400 * 359.45608 * 21 20 19 26 26 H 1.08999 * 109.46938 * 300.00589 * 1 2 3 27 27 H 1.09000 * 109.46817 * 59.99582 * 1 2 3 28 28 H 1.08995 * 109.47739 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46820 * 300.00532 * 6 5 4 30 30 H 1.08998 * 109.47063 * 60.00104 * 6 5 4 31 31 H 1.09000 * 109.47106 * 90.00886 * 10 9 7 32 32 H 1.09005 * 109.46936 * 210.00250 * 10 9 7 33 33 H 1.08994 * 109.47422 * 330.00645 * 10 9 7 34 34 H 1.08999 * 109.47420 * 209.99574 * 11 9 7 35 35 H 1.09001 * 109.47056 * 329.99831 * 11 9 7 36 36 H 1.09000 * 113.61326 * 254.52862 * 14 12 11 37 37 H 1.09004 * 113.61585 * 25.34477 * 14 12 11 38 38 H 0.96697 * 114.00305 * 180.02562 * 17 15 14 39 39 H 1.09002 * 113.61122 * 334.56539 * 18 12 11 40 40 H 1.08988 * 113.61419 * 105.47052 * 18 12 11 41 41 H 1.08005 * 120.00453 * 179.97438 * 19 4 3 42 42 H 1.07999 * 119.93162 * 180.27366 * 20 19 4 43 43 H 1.09004 * 109.46453 * 239.73169 * 22 21 20 44 44 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 45 45 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 46 46 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 47 47 H 1.08001 * 119.99775 * 180.25292 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4360 1.2861 0.0005 5 8 4.1795 0.1474 0.0016 6 6 5.6003 0.3002 0.0027 7 6 6.2518 -1.0587 0.0031 8 8 5.5667 -2.0595 0.0030 9 7 7.5956 -1.1617 0.0046 10 6 8.4229 0.0472 0.0053 11 6 8.2289 -2.4828 0.0056 12 6 8.4509 -2.9431 -1.4365 13 1 8.8689 -2.1614 -2.0707 14 6 9.1898 -4.2871 -1.5474 15 6 8.2268 -4.6324 -2.6955 16 1 8.5827 -4.3129 -3.6749 17 8 7.7823 -5.9904 -2.6810 18 6 7.2315 -3.6495 -2.0523 19 6 4.0604 2.5230 0.0011 20 6 3.3032 3.6796 -0.0047 21 6 1.9226 3.6056 0.0004 22 6 1.1020 4.8696 0.0002 23 8 0.2781 4.9025 -1.1668 24 14 2.2370 6.3469 0.0011 25 6 1.2934 2.3747 -0.0001 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 5.9073 0.8497 -0.8873 30 1 5.9059 0.8503 0.8927 31 1 8.6271 0.3472 1.0331 32 1 9.3632 -0.1557 -0.5075 33 1 7.8943 0.8496 -0.5092 34 1 9.1879 -2.4256 0.5204 35 1 7.5828 -3.1950 0.5189 36 1 10.2285 -4.1896 -1.8632 37 1 9.0721 -4.9238 -0.6705 38 1 7.1766 -6.2138 -3.4009 39 1 6.5762 -4.1122 -1.3143 40 1 6.6916 -3.0380 -2.7751 41 1 5.1388 2.5837 0.0019 42 1 3.7911 4.6431 -0.0088 43 1 0.4729 4.8943 0.8901 44 1 0.7722 4.8830 -1.9978 45 1 3.1221 6.3080 -1.1908 46 1 1.4399 7.5998 0.0016 47 1 0.2148 2.3197 -0.0002 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:16:12 Heat of formation + Delta-G solvation = -121.013737 kcal Electronic energy + Delta-G solvation = -29636.301622 eV Core-core repulsion = 25367.277446 eV Total energy + Delta-G solvation = -4269.024175 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.87141 -41.20714 -40.10387 -39.26493 -38.92939 -37.08663 -36.83609 -35.73298 -32.14032 -31.50831 -30.64191 -28.75959 -28.41017 -27.20190 -26.63744 -26.16120 -23.94862 -23.20141 -22.49219 -20.57585 -20.43094 -19.84458 -18.63542 -18.51970 -18.24796 -17.80801 -17.63024 -17.35008 -16.91577 -16.76251 -16.40136 -16.14959 -15.87223 -15.82737 -15.75982 -15.36368 -14.99626 -14.73032 -14.52905 -14.29847 -14.00535 -13.76008 -13.56663 -13.51285 -13.45287 -13.32193 -13.04897 -12.68889 -12.59812 -12.58352 -12.40255 -12.18774 -12.16619 -12.01232 -11.82364 -11.65049 -11.28721 -10.88844 -10.79331 -10.62812 -9.79513 -9.70166 -8.93236 -4.88357 0.15501 0.26776 1.33463 1.44406 1.46553 1.64228 1.99992 2.29446 2.44438 2.54558 3.25605 3.33744 3.39521 3.55440 3.62979 3.64720 3.79289 3.84042 3.84527 3.95181 3.99895 4.04867 4.12293 4.26112 4.28500 4.28603 4.33234 4.34977 4.38257 4.50803 4.56389 4.63783 4.64173 4.69858 4.74424 4.80860 4.86206 4.97420 4.98202 4.99827 5.11544 5.16396 5.35609 5.37313 5.49865 5.59215 5.95291 6.25327 6.48699 6.50898 6.81029 7.06447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.038 3.962 7 C 0.505 3.495 8 O -0.566 6.566 9 N -0.607 5.607 10 C 0.061 3.939 11 C 0.126 3.874 12 C -0.113 4.113 13 H 0.113 0.887 14 C -0.118 4.118 15 C 0.070 3.930 16 H 0.099 0.901 17 O -0.584 6.584 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.086 4.086 23 O -0.551 6.551 24 Si 0.778 3.222 25 C -0.152 4.152 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.392 0.608 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.175 0.825 42 H 0.160 0.840 43 H 0.122 0.878 44 H 0.386 0.614 45 H -0.274 1.274 46 H -0.307 1.307 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 7.004 0.194 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.030 3.970 4 C 0.039 3.961 5 O -0.229 6.229 6 C -0.040 4.040 7 C 0.293 3.707 8 O -0.444 6.444 9 N -0.341 5.341 10 C -0.080 4.080 11 C 0.004 3.996 12 C -0.132 4.132 13 H 0.131 0.869 14 C -0.156 4.156 15 C 0.011 3.989 16 H 0.116 0.884 17 O -0.392 6.392 18 C -0.197 4.197 19 C -0.178 4.178 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.194 4.194 23 O -0.359 6.359 24 Si 0.682 3.318 25 C -0.171 4.171 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.242 0.758 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.192 0.808 42 H 0.177 0.823 43 H 0.140 0.860 44 H 0.235 0.765 45 H -0.200 1.200 46 H -0.236 1.236 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.116 6.780 0.755 9.858 hybrid contribution -1.445 -0.594 -1.629 2.257 sum 5.671 6.186 -0.873 8.438 Atomic orbital electron populations 1.23277 0.76821 1.05158 1.02106 1.86189 1.22995 1.26716 1.89110 1.18680 0.89916 0.85616 1.02762 1.18616 0.88213 0.86575 1.02720 1.86227 1.18271 1.29157 1.89248 1.22809 0.79231 0.95492 1.06426 1.20588 0.82965 0.90812 0.76352 1.90760 1.63672 1.40013 1.49962 1.47842 1.04519 1.08857 1.72890 1.22272 0.96442 0.85294 1.04009 1.21516 0.98641 0.83436 0.96032 1.22703 0.96470 0.96864 0.97198 0.86878 1.23021 0.99066 0.95335 0.98148 1.23592 0.95506 0.80826 0.98989 0.88359 1.86479 1.68070 1.28592 1.56013 1.23626 0.97196 0.98692 1.00221 1.21367 1.02223 0.89302 1.04887 1.21016 0.92369 0.98990 1.00221 1.20139 0.94478 0.94682 1.02360 1.25332 1.00727 1.02332 0.90978 1.86565 1.36801 1.95822 1.16685 0.94000 0.78063 0.72205 0.87513 1.21007 1.00498 0.90538 1.05013 0.91581 0.91918 0.87172 0.85973 0.85746 0.90443 0.88726 0.88975 0.87106 0.92485 0.88655 0.90231 0.75848 0.91935 0.92763 0.80769 0.82276 0.85999 0.76465 1.20040 1.23600 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.34 -3.98 10.28 -79.53 -0.82 -4.79 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.51 6.70 22.57 0.15 0.66 16 5 O -0.32 -3.01 9.45 -67.05 -0.63 -3.64 16 6 C 0.04 -0.04 3.77 71.23 0.27 0.23 16 7 C 0.51 2.64 7.75 87.66 0.68 3.32 16 8 O -0.57 -9.60 15.17 16.01 0.24 -9.36 16 9 N -0.61 1.38 2.87 -846.77 -2.43 -1.05 16 10 C 0.06 -0.74 10.24 127.77 1.31 0.57 16 11 C 0.13 -0.10 5.23 86.38 0.45 0.35 16 12 C -0.11 0.13 3.96 -10.26 -0.04 0.09 16 13 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 14 C -0.12 0.03 7.47 31.12 0.23 0.26 16 15 C 0.07 0.16 5.21 31.18 0.16 0.32 16 16 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 17 O -0.58 -3.51 13.67 -148.98 -2.04 -5.55 16 18 C -0.16 -0.84 6.86 31.18 0.21 -0.63 16 19 C -0.16 0.40 9.04 22.35 0.20 0.60 16 20 C -0.11 0.37 8.66 22.28 0.19 0.57 16 21 C -0.12 0.00 5.39 -19.86 -0.11 -0.10 16 22 C -0.09 0.13 2.82 71.24 0.20 0.33 16 23 O -0.55 -1.08 12.77 -148.98 -1.90 -2.99 16 24 Si 0.78 -3.36 29.78 68.60 2.04 -1.32 16 25 C -0.15 -0.61 8.60 22.35 0.19 -0.41 16 26 H 0.07 0.03 7.66 -2.39 -0.02 0.01 16 27 H 0.06 0.06 7.66 -2.39 -0.02 0.05 16 28 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.12 -0.97 6.92 -2.39 -0.02 -0.99 16 30 H 0.12 -0.99 7.63 -2.39 -0.02 -1.01 16 31 H 0.08 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.09 -1.39 8.07 -2.38 -0.02 -1.40 16 33 H 0.09 -1.47 6.44 -2.39 -0.02 -1.49 16 34 H 0.11 -0.72 8.07 -2.39 -0.02 -0.73 16 35 H 0.06 0.35 7.15 -2.39 -0.02 0.34 16 36 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.08 0.21 8.10 -2.39 -0.02 0.19 16 38 H 0.39 -0.62 9.12 -74.06 -0.68 -1.29 16 39 H 0.06 0.79 7.64 -2.39 -0.02 0.77 16 40 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.18 -1.88 6.30 -2.91 -0.02 -1.90 16 42 H 0.16 -1.48 4.87 -2.91 -0.01 -1.49 16 43 H 0.12 -0.32 7.96 -2.38 -0.02 -0.34 16 44 H 0.39 -1.39 8.70 -74.06 -0.64 -2.04 16 45 H -0.27 0.47 7.11 99.48 0.71 1.18 16 46 H -0.31 -1.28 7.11 99.48 0.71 -0.58 16 47 H 0.14 0.38 6.30 -2.91 -0.02 0.36 16 Total: 0.00 -32.42 383.89 -0.44 -32.86 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: -0.27 Total: -12.29 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.37 Total: 8.13 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.43 Total: -1.05 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -5.15 Total: -26.32 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.04 Total: -1.32 kcal Total: -32.42 -0.44 -32.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.155 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds