Wall clock time and date at job start Sat Mar 6 2021 17:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35967 * 117.00069 * 2 1 4 4 C 1.39442 * 120.12103 * 180.02562 * 3 2 1 5 5 O 1.34772 * 133.24459 * 0.04153 * 4 3 2 6 6 C 1.34928 * 110.84754 * 179.97438 * 5 4 3 7 7 C 1.46988 * 125.14724 * 179.97438 * 6 5 4 8 8 O 1.21652 * 120.00401 * 186.42920 * 7 6 5 9 9 N 1.34781 * 119.99565 * 6.43314 * 7 6 5 10 10 C 1.46494 * 120.00031 * 5.37998 * 9 7 6 11 11 C 1.46498 * 120.00080 * 185.38756 * 9 7 6 12 12 C 1.52998 * 109.47072 * 269.99783 * 11 9 7 13 13 H 1.08998 * 112.85178 * 316.19547 * 12 11 9 14 14 C 1.53784 * 113.61365 * 87.49862 * 12 11 9 15 15 C 1.53783 * 87.08109 * 139.98552 * 14 12 11 16 16 H 1.08994 * 113.69951 * 89.12349 * 15 14 12 17 17 O 1.42899 * 113.61451 * 220.02457 * 15 14 12 18 18 C 1.53779 * 113.61701 * 184.99545 * 12 11 9 19 19 C 1.35813 * 109.71543 * 0.23265 * 6 5 4 20 20 C 1.40612 * 119.13741 * 180.02562 * 4 3 2 21 21 C 1.39780 * 120.11768 * 359.97438 * 20 4 3 22 22 C 1.50699 * 120.09194 * 180.02562 * 21 20 4 23 23 O 1.42896 * 109.46946 * 284.97393 * 22 21 20 24 24 Si 1.86305 * 109.47141 * 164.97732 * 22 21 20 25 25 C 1.36625 * 119.81179 * 0.02562 * 21 20 4 26 26 C 1.38264 * 120.12117 * 0.02562 * 3 2 1 27 27 H 1.08997 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47034 * 299.99901 * 1 2 3 29 29 H 1.09006 * 109.47061 * 60.00063 * 1 2 3 30 30 H 1.08995 * 109.47639 * 275.37641 * 10 9 7 31 31 H 1.09001 * 109.47285 * 155.37510 * 10 9 7 32 32 H 1.08998 * 109.47249 * 35.38230 * 10 9 7 33 33 H 1.09009 * 109.46990 * 29.99318 * 11 9 7 34 34 H 1.08993 * 109.47474 * 149.99423 * 11 9 7 35 35 H 1.08998 * 113.61520 * 254.52871 * 14 12 11 36 36 H 1.08999 * 113.61583 * 25.43399 * 14 12 11 37 37 H 0.96702 * 113.99690 * 277.49503 * 17 15 14 38 38 H 1.09007 * 113.61324 * 334.57045 * 18 12 11 39 39 H 1.09002 * 113.61289 * 105.46911 * 18 12 11 40 40 H 1.07999 * 126.95520 * 179.72354 * 19 6 5 41 41 H 1.08993 * 109.47608 * 44.97637 * 22 21 20 42 42 H 0.96700 * 114.00262 * 180.02562 * 23 22 21 43 43 H 1.48498 * 109.99756 * 59.99490 * 24 22 21 44 44 H 1.48495 * 109.99926 * 181.31606 * 24 22 21 45 45 H 1.08005 * 119.75101 * 179.97438 * 25 21 20 46 46 H 1.08005 * 119.65828 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4141 0.3574 -0.0018 6 6 5.6317 0.9386 -0.0024 7 6 6.9131 0.2185 -0.0032 8 8 7.9564 0.8331 0.1143 9 7 6.9322 -1.1228 -0.1343 10 6 5.6879 -1.8512 -0.3938 11 6 8.1972 -1.8523 -0.0171 12 6 8.8508 -1.9646 -1.3959 13 1 8.1419 -2.2306 -2.1800 14 6 9.7457 -0.7660 -1.7528 15 6 10.7247 -1.7804 -2.3673 16 1 10.5300 -1.9961 -3.4178 17 8 12.0975 -1.4808 -2.1075 18 6 10.1283 -2.8205 -1.4042 19 6 5.4945 2.2898 0.0037 20 6 4.0554 2.5510 0.0000 21 6 3.2765 3.7117 0.0006 22 6 3.9382 5.0656 0.0006 23 8 4.4605 5.3405 1.3019 24 14 2.6864 6.3685 -0.4539 25 6 1.9137 3.6151 0.0011 26 6 1.2957 2.3726 0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 5.1793 -2.0494 0.5496 31 1 5.9159 -2.7951 -0.8889 32 1 5.0427 -1.2511 -1.0353 33 1 8.8642 -1.3168 0.6586 34 1 8.0059 -2.8505 0.3767 35 1 9.3006 -0.0911 -2.4837 36 1 10.1456 -0.2453 -0.8827 37 1 12.4782 -0.8272 -2.7100 38 1 10.6328 -2.8615 -0.4387 39 1 9.9920 -3.8041 -1.8537 40 1 6.2874 3.0229 0.0090 41 1 4.7505 5.0732 -0.7260 42 1 4.9012 6.1981 1.3759 43 1 1.5735 6.3685 0.5292 44 1 3.3337 7.7045 -0.4885 45 1 1.3128 4.5125 0.0019 46 1 0.2174 2.3120 0.0005 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:16:24 Heat of formation + Delta-G solvation = -73.964790 kcal Electronic energy + Delta-G solvation = -31120.210257 eV Core-core repulsion = 26752.311615 eV Total energy + Delta-G solvation = -4367.898642 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.150 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.80020 -41.33389 -40.59147 -39.86952 -39.01479 -37.25662 -37.04784 -35.74080 -33.67612 -32.07381 -31.28800 -29.71978 -28.50774 -27.63647 -26.67801 -26.24637 -25.00332 -24.00463 -23.21445 -21.75099 -21.10753 -20.55164 -19.32288 -19.00307 -18.60646 -18.51080 -18.27095 -17.82512 -17.46871 -16.92504 -16.76567 -16.40620 -16.32254 -15.99460 -15.72054 -15.58130 -15.08696 -14.75142 -14.63161 -14.54277 -14.32991 -14.16064 -14.02968 -13.95173 -13.51326 -13.42235 -13.30300 -13.19243 -13.05554 -12.67334 -12.54245 -12.43889 -12.35681 -12.06783 -11.81765 -11.74647 -11.53725 -11.27492 -11.03364 -10.78446 -10.50146 -9.96728 -9.76789 -9.01020 -4.91938 -0.68528 0.08193 0.59507 1.15174 1.27680 1.60586 1.76383 1.88103 1.92599 2.12185 2.34848 3.00675 3.28380 3.32238 3.50933 3.53664 3.63205 3.70105 3.78001 3.80385 3.89743 3.95676 3.96927 4.11503 4.18072 4.24181 4.32403 4.33740 4.34866 4.42350 4.43115 4.45327 4.58909 4.75422 4.76474 4.77408 4.79972 4.83921 4.84213 4.92060 4.99661 5.02886 5.15041 5.20266 5.25967 5.35352 5.45439 5.59483 6.01730 6.24236 6.56243 6.72708 6.84442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.140 3.860 4 C 0.017 3.983 5 O -0.169 6.169 6 C -0.031 4.031 7 C 0.593 3.407 8 O -0.538 6.538 9 N -0.598 5.598 10 C 0.074 3.926 11 C 0.125 3.875 12 C -0.118 4.118 13 H 0.107 0.893 14 C -0.157 4.157 15 C 0.071 3.929 16 H 0.097 0.903 17 O -0.582 6.582 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.098 4.098 21 C -0.067 4.067 22 C -0.093 4.093 23 O -0.558 6.558 24 Si 0.780 3.220 25 C -0.090 4.090 26 C -0.168 4.168 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.394 0.606 43 H -0.280 1.280 44 H -0.287 1.287 45 H 0.160 0.840 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -1.411 -5.048 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.094 3.906 4 C -0.031 4.031 5 O -0.071 6.071 6 C -0.081 4.081 7 C 0.380 3.620 8 O -0.418 6.418 9 N -0.328 5.328 10 C -0.067 4.067 11 C 0.004 3.996 12 C -0.137 4.137 13 H 0.126 0.874 14 C -0.195 4.195 15 C 0.012 3.988 16 H 0.115 0.885 17 O -0.390 6.390 18 C -0.155 4.155 19 C -0.136 4.136 20 C -0.099 4.099 21 C -0.067 4.067 22 C -0.200 4.200 23 O -0.368 6.368 24 Si 0.683 3.317 25 C -0.108 4.108 26 C -0.186 4.186 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.188 0.812 41 H 0.102 0.898 42 H 0.244 0.756 43 H -0.207 1.207 44 H -0.214 1.214 45 H 0.177 0.823 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.333 -1.945 -4.147 8.646 hybrid contribution 1.038 1.153 0.588 1.659 sum -6.295 -0.792 -3.559 7.275 Atomic orbital electron populations 1.23488 0.75357 1.06074 1.03081 1.86139 1.24249 1.25561 1.88410 1.17914 0.86107 0.86779 0.99809 1.19250 0.88465 0.87331 1.08051 1.84279 1.12514 1.34120 1.76235 1.21961 0.84237 0.92624 1.09245 1.16871 0.85091 0.82624 0.77376 1.90873 1.31521 1.67761 1.51609 1.47849 1.10691 1.05118 1.69156 1.22125 0.84055 0.98111 1.02423 1.21706 0.83448 0.97553 0.96891 1.22703 0.95947 0.97005 0.98028 0.87439 1.23612 0.97828 0.96967 1.01046 1.23514 0.80178 0.96227 0.98865 0.88533 1.86480 1.25973 1.65387 1.61183 1.23028 0.94137 0.98021 1.00264 1.22795 0.95189 0.94458 1.01168 1.19585 0.92492 0.92864 1.04948 1.18655 0.93123 0.92254 1.02682 1.25169 1.06139 1.00891 0.87847 1.86573 1.77328 1.42502 1.30394 0.93964 0.76571 0.73676 0.87511 1.20820 0.92958 0.98847 0.98146 1.21345 1.01840 0.89528 1.05891 0.86427 0.91129 0.90404 0.91749 0.87423 0.90908 0.91135 0.86941 0.92538 0.91061 0.75784 0.89803 0.88869 0.81179 0.89776 0.75556 1.20740 1.21389 0.82299 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.89 10.50 -93.18 -0.98 -1.87 16 3 C 0.14 0.59 6.70 22.57 0.15 0.74 16 4 C 0.02 0.14 7.35 23.14 0.17 0.31 16 5 O -0.17 -1.49 7.38 -13.38 -0.10 -1.59 16 6 C -0.03 -0.29 6.66 24.00 0.16 -0.13 16 7 C 0.59 5.78 7.64 86.54 0.66 6.45 16 8 O -0.54 -8.07 15.38 -4.20 -0.06 -8.14 16 9 N -0.60 -2.15 2.87 -851.19 -2.45 -4.59 16 10 C 0.07 -0.09 9.29 127.77 1.19 1.10 16 11 C 0.13 0.13 5.19 86.38 0.45 0.58 16 12 C -0.12 0.00 3.96 -10.27 -0.04 -0.04 16 13 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 14 C -0.16 -0.70 6.64 31.12 0.21 -0.50 16 15 C 0.07 0.13 5.21 31.12 0.16 0.29 16 16 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 17 O -0.58 -2.86 13.67 -148.98 -2.04 -4.90 16 18 C -0.12 0.02 7.47 31.12 0.23 0.25 16 19 C -0.12 -1.09 10.68 23.79 0.25 -0.84 16 20 C -0.10 -0.82 6.16 -20.24 -0.12 -0.94 16 21 C -0.07 -0.30 5.30 -19.87 -0.11 -0.40 16 22 C -0.09 -0.12 2.70 71.24 0.19 0.08 16 23 O -0.56 -2.48 12.86 -148.98 -1.92 -4.39 16 24 Si 0.78 -2.38 30.20 68.60 2.07 -0.31 16 25 C -0.09 -0.03 8.62 22.02 0.19 0.16 16 26 C -0.17 0.15 9.03 22.40 0.20 0.35 16 27 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 28 H 0.07 -0.61 7.66 -2.39 -0.02 -0.63 16 29 H 0.08 -0.77 7.66 -2.38 -0.02 -0.79 16 30 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 31 H 0.11 -0.73 8.03 -2.39 -0.02 -0.75 16 32 H 0.07 0.08 5.97 -2.39 -0.01 0.07 16 33 H 0.07 0.38 7.20 -2.38 -0.02 0.36 16 34 H 0.11 -0.48 8.07 -2.39 -0.02 -0.50 16 35 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 37 H 0.39 -1.10 9.12 -74.06 -0.68 -1.77 16 38 H 0.08 0.16 8.10 -2.38 -0.02 0.14 16 39 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.08 -0.09 7.96 -2.39 -0.02 -0.11 16 42 H 0.39 -1.47 8.74 -74.06 -0.65 -2.12 16 43 H -0.28 -0.43 6.75 99.48 0.67 0.24 16 44 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 45 H 0.16 -0.68 4.85 -2.91 -0.01 -0.69 16 46 H 0.18 -1.47 6.26 -2.91 -0.02 -1.49 16 Total: 0.00 -23.98 379.30 -0.69 -24.67 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -0.28 Total: -7.37 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.06 Total: 8.49 kcal Atomic # 7 Polarization: -2.15 SS G_CDS: -2.45 Total: -4.59 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -5.09 Total: -20.88 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.07 Total: -0.31 kcal Total: -23.98 -0.69 -24.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.298 kcal (2) G-P(sol) polarization free energy of solvation -23.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds