Wall clock time and date at job start Sat Mar 6 2021 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36767 * 125.79639 * 2 1 4 4 C 1.47266 * 126.94824 * 0.07834 * 3 2 1 5 5 O 1.21626 * 119.99238 * 348.94893 * 4 3 2 6 6 N 1.34771 * 120.00155 * 168.95174 * 4 3 2 7 7 C 1.46494 * 120.00087 * 0.84265 * 6 4 3 8 8 C 1.46500 * 120.00017 * 180.84591 * 6 4 3 9 9 C 1.52998 * 109.47227 * 89.99328 * 8 6 4 10 10 H 1.09000 * 112.84496 * 43.81132 * 9 8 6 11 11 C 1.53784 * 113.61490 * 174.99797 * 9 8 6 12 12 C 1.53778 * 87.08090 * 139.98713 * 11 9 8 13 13 H 1.09004 * 113.61655 * 89.11443 * 12 11 9 14 14 O 1.42897 * 113.61730 * 219.94035 * 12 11 9 15 15 C 1.53775 * 113.62111 * 272.50283 * 9 8 6 16 16 C 1.46693 * 106.11119 * 179.79964 * 3 2 1 17 17 C 1.34492 * 106.33140 * 0.39176 * 16 3 2 18 18 C 1.50702 * 125.56996 * 179.86655 * 17 16 3 19 19 O 1.42907 * 109.46964 * 299.72104 * 18 17 16 20 20 Si 1.86297 * 109.46813 * 179.72325 * 18 17 16 21 21 N 1.34657 * 125.80150 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46806 * 269.97815 * 1 2 3 23 23 H 1.09003 * 109.47290 * 29.97889 * 1 2 3 24 24 H 1.09005 * 109.47204 * 149.98283 * 1 2 3 25 25 H 1.09003 * 109.47187 * 83.33985 * 7 6 4 26 26 H 1.09007 * 109.47382 * 203.33810 * 7 6 4 27 27 H 1.09003 * 109.47543 * 323.34255 * 7 6 4 28 28 H 1.08995 * 109.47387 * 209.99795 * 8 6 4 29 29 H 1.09004 * 109.46871 * 330.00043 * 8 6 4 30 30 H 1.08996 * 113.61757 * 254.53667 * 11 9 8 31 31 H 1.09003 * 113.60851 * 25.43807 * 11 9 8 32 32 H 0.96698 * 114.00331 * 180.02562 * 14 12 11 33 33 H 1.09006 * 113.60809 * 334.56191 * 15 9 8 34 34 H 1.08997 * 113.61869 * 105.46745 * 15 9 8 35 35 H 1.07997 * 126.83167 * 180.26553 * 16 3 2 36 36 H 1.08994 * 109.46860 * 59.71665 * 18 17 16 37 37 H 0.96697 * 113.99692 * 300.00300 * 19 18 17 38 38 H 1.48494 * 110.00121 * 58.68086 * 20 18 17 39 39 H 1.48505 * 109.99605 * 179.97438 * 20 18 17 40 40 H 0.97001 * 124.84954 * 359.97053 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 0.0016 5 8 0.7022 2.7898 -0.1988 6 7 2.7644 3.4989 0.2251 7 6 4.1744 3.1698 0.4480 8 6 2.3265 4.8968 0.2451 9 6 1.9270 5.2857 1.6698 10 1 2.6322 4.9275 2.4198 11 6 1.5660 6.7726 1.8242 12 6 0.4271 6.3187 2.7524 13 1 0.7210 6.2424 3.7993 14 8 -0.7869 7.0498 2.5687 15 6 0.4585 4.9754 2.0044 16 6 3.6882 0.6152 0.0049 17 6 3.6095 -0.7274 -0.0014 18 6 4.7820 -1.6742 -0.0024 19 8 5.5755 -1.4485 -1.1692 20 14 4.1615 -3.4308 -0.0036 21 7 2.2947 -1.0921 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8899 -0.5141 25 1 4.6738 3.0413 -0.5123 26 1 4.6531 3.9779 1.0013 27 1 4.2456 2.2452 1.0210 28 1 3.1414 5.5376 -0.0916 29 1 1.4703 5.0188 -0.4184 30 1 2.3340 7.3582 2.3295 31 1 1.2184 7.2356 0.9006 32 1 -1.5069 6.7692 3.1500 33 1 -0.1919 4.9472 1.1301 34 1 0.3323 4.1102 2.6552 35 1 4.5889 1.2110 0.0103 36 1 5.3877 -1.5033 0.8875 37 1 5.0998 -1.5825 -2.0003 38 1 3.3082 -3.6673 -1.1956 39 1 5.3082 -4.3745 -0.0052 40 1 1.9734 -2.0074 -0.0005 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12312124_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:16:44 Heat of formation + Delta-G solvation = -25.177750 kcal Electronic energy + Delta-G solvation = -22715.461030 eV Core-core repulsion = 19306.294848 eV Total energy + Delta-G solvation = -3409.166182 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55867 -40.75684 -39.51378 -37.97575 -36.65785 -35.58957 -32.81702 -32.42479 -29.43411 -28.93987 -27.68499 -26.54794 -25.23491 -24.01208 -22.28995 -21.73614 -20.40520 -19.43707 -18.74152 -18.36258 -17.81757 -16.97603 -16.77106 -16.70667 -16.40674 -15.92055 -15.38484 -15.28805 -15.10017 -14.83412 -14.54900 -14.22772 -14.00132 -13.91856 -13.73496 -13.43550 -13.25710 -13.04662 -12.81779 -12.74313 -12.61996 -12.33941 -12.20681 -12.13330 -11.66758 -11.14671 -10.91926 -10.64179 -10.47055 -9.84015 -9.50954 -9.09120 -5.26469 0.80168 0.97611 1.27188 1.30171 1.69621 1.98718 2.26924 2.67031 3.17358 3.35432 3.55081 3.64219 3.76072 3.82819 3.90996 4.02327 4.07068 4.20913 4.23312 4.37789 4.38714 4.48335 4.50814 4.56045 4.64337 4.68874 4.76380 4.80113 4.88765 4.94502 4.98330 5.02145 5.15815 5.23470 5.31549 5.54504 5.67505 5.73820 5.89366 6.23091 6.33729 6.60558 6.81610 7.49818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.237 4.237 4 C 0.593 3.407 5 O -0.544 6.544 6 N -0.611 5.611 7 C 0.063 3.937 8 C 0.129 3.871 9 C -0.126 4.126 10 H 0.092 0.908 11 C -0.121 4.121 12 C 0.072 3.928 13 H 0.078 0.922 14 O -0.561 6.561 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.030 4.030 18 C -0.039 4.039 19 O -0.522 6.522 20 Si 0.667 3.333 21 N -0.545 5.545 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.378 0.622 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.378 0.622 38 H -0.255 1.255 39 H -0.246 1.246 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -3.319 3.111 4.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.004 3.996 3 C -0.247 4.247 4 C 0.384 3.616 5 O -0.423 6.423 6 N -0.343 5.343 7 C -0.080 4.080 8 C 0.006 3.994 9 C -0.146 4.146 10 H 0.110 0.890 11 C -0.159 4.159 12 C 0.013 3.987 13 H 0.096 0.904 14 O -0.366 6.366 15 C -0.189 4.189 16 C -0.168 4.168 17 C -0.138 4.138 18 C -0.150 4.150 19 O -0.328 6.328 20 Si 0.567 3.433 21 N -0.144 5.144 22 H 0.099 0.901 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.225 0.775 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.181 0.819 36 H 0.147 0.853 37 H 0.226 0.774 38 H -0.180 1.180 39 H -0.169 1.169 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.656 -3.649 2.558 4.754 hybrid contribution 0.023 -0.339 -0.579 0.671 sum 1.679 -3.988 1.979 4.758 Atomic orbital electron populations 1.20678 0.86635 1.04792 1.03784 1.20382 0.93728 0.85243 1.00296 1.20100 0.93045 0.92071 1.19487 1.17334 0.84723 0.83968 0.75600 1.90729 1.17376 1.83776 1.50391 1.47552 1.08563 1.06301 1.71899 1.22469 0.81215 1.02834 1.01451 1.21452 1.01011 0.80802 0.96097 1.22730 0.97498 0.96335 0.98004 0.89016 1.23052 0.96573 0.95772 1.00506 1.23380 0.85545 0.92062 0.97742 0.90391 1.86523 1.22507 1.62530 1.65071 1.23659 0.96475 0.97193 1.01568 1.22581 0.96427 0.92482 1.05312 1.20582 0.84303 0.95780 1.13175 1.24353 0.92326 1.06588 0.91754 1.86647 1.39571 1.90900 1.15655 0.95681 0.83994 0.75166 0.88473 1.41743 1.05619 1.08436 1.58619 0.90145 0.87529 0.91522 0.92379 0.91263 0.89175 0.90410 0.89449 0.90771 0.88952 0.77482 0.88517 0.91872 0.81892 0.85338 0.77415 1.18015 1.16949 0.74844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 10.00 36.01 0.36 0.37 16 2 C 0.12 0.11 7.17 -81.88 -0.59 -0.47 16 3 C -0.24 -0.52 6.06 -103.35 -0.63 -1.15 16 4 C 0.59 2.13 7.65 -12.59 -0.10 2.03 16 5 O -0.54 -3.25 13.73 5.25 0.07 -3.18 16 6 N -0.61 -0.82 2.87 -182.91 -0.53 -1.34 16 7 C 0.06 -0.08 8.73 59.84 0.52 0.44 16 8 C 0.13 0.11 5.22 -4.04 -0.02 0.09 16 9 C -0.13 -0.05 3.96 -89.81 -0.36 -0.41 16 10 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 11 C -0.12 -0.07 7.47 -25.92 -0.19 -0.26 16 12 C 0.07 0.08 5.21 -25.92 -0.14 -0.06 16 13 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 14 O -0.56 -1.33 13.67 -35.23 -0.48 -1.81 16 15 C -0.15 -0.27 6.93 -25.92 -0.18 -0.45 16 16 C -0.14 -0.06 8.71 -37.49 -0.33 -0.39 16 17 C -0.03 0.02 6.11 -81.86 -0.50 -0.48 16 18 C -0.04 0.07 2.98 36.01 0.11 0.18 16 19 O -0.52 0.12 12.87 -35.23 -0.45 -0.34 16 20 Si 0.67 -1.79 30.94 -169.99 -5.26 -7.05 16 21 N -0.54 0.63 5.41 -5.42 -0.03 0.60 16 22 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.11 0.22 6.31 -51.93 -0.33 -0.11 16 24 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.06 -0.10 7.64 -51.93 -0.40 -0.49 16 26 H 0.07 -0.19 8.02 -51.93 -0.42 -0.60 16 27 H 0.09 -0.14 4.83 -51.93 -0.25 -0.39 16 28 H 0.08 -0.06 8.07 -51.93 -0.42 -0.48 16 29 H 0.09 0.24 7.11 -51.93 -0.37 -0.13 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.09 0.12 8.10 -51.93 -0.42 -0.30 16 32 H 0.38 -0.61 9.12 45.56 0.42 -0.19 16 33 H 0.10 0.38 7.77 -51.93 -0.40 -0.03 16 34 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.16 -0.15 4.84 -52.49 -0.25 -0.40 16 36 H 0.13 -0.36 7.96 -51.93 -0.41 -0.77 16 37 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 38 H -0.26 0.19 7.11 56.52 0.40 0.59 16 39 H -0.25 -0.20 7.11 56.52 0.40 0.21 16 40 H 0.41 -1.49 6.70 -40.82 -0.27 -1.76 16 LS Contribution 323.96 15.07 4.88 4.88 Total: 0.00 -8.24 323.96 -8.70 -16.93 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: -4.87 Total: -8.14 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.03 Total: -0.56 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -0.55 Total: -0.74 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.86 Total: -5.32 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.26 Total: -7.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -8.24 -8.70 -16.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -8.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds