Wall clock time and date at job start Sat Mar 6 2021 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36767 * 125.79639 * 2 1 4 4 C 1.47266 * 126.94824 * 0.07834 * 3 2 1 5 5 O 1.21626 * 119.99238 * 348.94893 * 4 3 2 6 6 N 1.34771 * 120.00155 * 168.95174 * 4 3 2 7 7 C 1.46494 * 120.00087 * 0.84265 * 6 4 3 8 8 C 1.46500 * 120.00017 * 180.84591 * 6 4 3 9 9 C 1.52998 * 109.47227 * 89.99328 * 8 6 4 10 10 H 1.09000 * 112.84496 * 43.81132 * 9 8 6 11 11 C 1.53784 * 113.61490 * 174.99797 * 9 8 6 12 12 C 1.53778 * 87.08090 * 139.98713 * 11 9 8 13 13 H 1.09004 * 113.61655 * 89.11443 * 12 11 9 14 14 O 1.42897 * 113.61730 * 219.94035 * 12 11 9 15 15 C 1.53775 * 113.62111 * 272.50283 * 9 8 6 16 16 C 1.46693 * 106.11119 * 179.79964 * 3 2 1 17 17 C 1.34492 * 106.33140 * 0.39176 * 16 3 2 18 18 C 1.50702 * 125.56996 * 179.86655 * 17 16 3 19 19 O 1.42907 * 109.46964 * 299.72104 * 18 17 16 20 20 Si 1.86297 * 109.46813 * 179.72325 * 18 17 16 21 21 N 1.34657 * 125.80150 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46806 * 269.97815 * 1 2 3 23 23 H 1.09003 * 109.47290 * 29.97889 * 1 2 3 24 24 H 1.09005 * 109.47204 * 149.98283 * 1 2 3 25 25 H 1.09003 * 109.47187 * 83.33985 * 7 6 4 26 26 H 1.09007 * 109.47382 * 203.33810 * 7 6 4 27 27 H 1.09003 * 109.47543 * 323.34255 * 7 6 4 28 28 H 1.08995 * 109.47387 * 209.99795 * 8 6 4 29 29 H 1.09004 * 109.46871 * 330.00043 * 8 6 4 30 30 H 1.08996 * 113.61757 * 254.53667 * 11 9 8 31 31 H 1.09003 * 113.60851 * 25.43807 * 11 9 8 32 32 H 0.96698 * 114.00331 * 180.02562 * 14 12 11 33 33 H 1.09006 * 113.60809 * 334.56191 * 15 9 8 34 34 H 1.08997 * 113.61869 * 105.46745 * 15 9 8 35 35 H 1.07997 * 126.83167 * 180.26553 * 16 3 2 36 36 H 1.08994 * 109.46860 * 59.71665 * 18 17 16 37 37 H 0.96697 * 113.99692 * 300.00300 * 19 18 17 38 38 H 1.48494 * 110.00121 * 58.68086 * 20 18 17 39 39 H 1.48505 * 109.99605 * 179.97438 * 20 18 17 40 40 H 0.97001 * 124.84954 * 359.97053 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 0.0016 5 8 0.7022 2.7898 -0.1988 6 7 2.7644 3.4989 0.2251 7 6 4.1744 3.1698 0.4480 8 6 2.3265 4.8968 0.2451 9 6 1.9270 5.2857 1.6698 10 1 2.6322 4.9275 2.4198 11 6 1.5660 6.7726 1.8242 12 6 0.4271 6.3187 2.7524 13 1 0.7210 6.2424 3.7993 14 8 -0.7869 7.0498 2.5687 15 6 0.4585 4.9754 2.0044 16 6 3.6882 0.6152 0.0049 17 6 3.6095 -0.7274 -0.0014 18 6 4.7820 -1.6742 -0.0024 19 8 5.5755 -1.4485 -1.1692 20 14 4.1615 -3.4308 -0.0036 21 7 2.2947 -1.0921 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8899 -0.5141 25 1 4.6738 3.0413 -0.5123 26 1 4.6531 3.9779 1.0013 27 1 4.2456 2.2452 1.0210 28 1 3.1414 5.5376 -0.0916 29 1 1.4703 5.0188 -0.4184 30 1 2.3340 7.3582 2.3295 31 1 1.2184 7.2356 0.9006 32 1 -1.5069 6.7692 3.1500 33 1 -0.1919 4.9472 1.1301 34 1 0.3323 4.1102 2.6552 35 1 4.5889 1.2110 0.0103 36 1 5.3877 -1.5033 0.8875 37 1 5.0998 -1.5825 -2.0003 38 1 3.3082 -3.6673 -1.1956 39 1 5.3082 -4.3745 -0.0052 40 1 1.9734 -2.0074 -0.0005 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:16:44 Heat of formation + Delta-G solvation = -27.064389 kcal Electronic energy + Delta-G solvation = -22715.542841 eV Core-core repulsion = 19306.294848 eV Total energy + Delta-G solvation = -3409.247993 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55737 -40.85880 -39.64944 -37.90184 -36.80678 -35.70802 -32.80901 -32.44566 -29.45680 -28.89945 -27.71055 -26.65361 -25.21986 -24.06679 -22.34803 -21.70928 -20.49606 -19.52024 -18.69971 -18.46529 -17.83404 -17.05107 -16.76098 -16.73852 -16.43358 -15.98875 -15.37659 -15.28791 -15.11032 -14.85605 -14.61411 -14.30496 -13.97145 -13.96097 -13.78433 -13.40911 -13.38602 -13.12706 -12.81738 -12.73836 -12.63510 -12.37189 -12.15617 -12.10706 -11.76766 -11.23067 -10.94304 -10.75065 -10.55582 -9.86315 -9.60573 -9.09839 -5.06809 0.71744 1.11752 1.30950 1.46146 1.82101 2.01873 2.26608 2.52160 3.31892 3.33050 3.52819 3.66741 3.68526 3.82450 3.87060 3.97866 4.04570 4.24158 4.32801 4.37612 4.45066 4.50954 4.53290 4.57179 4.68953 4.71167 4.76948 4.79859 4.85039 4.88737 4.94092 5.02057 5.04329 5.19914 5.24410 5.45159 5.64328 5.71106 5.88420 6.40079 6.44560 6.52207 6.86348 7.32902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.116 3.884 3 C -0.263 4.263 4 C 0.581 3.419 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.060 3.940 8 C 0.128 3.872 9 C -0.114 4.114 10 H 0.105 0.895 11 C -0.119 4.119 12 C 0.071 3.929 13 H 0.097 0.903 14 O -0.583 6.583 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.023 4.023 18 C -0.045 4.045 19 O -0.539 6.539 20 Si 0.753 3.247 21 N -0.534 5.534 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.392 0.608 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.175 0.825 36 H 0.142 0.858 37 H 0.387 0.613 38 H -0.279 1.279 39 H -0.293 1.293 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -3.791 3.966 6.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.004 4.004 3 C -0.272 4.272 4 C 0.373 3.627 5 O -0.463 6.463 6 N -0.341 5.341 7 C -0.082 4.082 8 C 0.005 3.995 9 C -0.134 4.134 10 H 0.123 0.877 11 C -0.157 4.157 12 C 0.013 3.987 13 H 0.115 0.885 14 O -0.391 6.391 15 C -0.190 4.190 16 C -0.176 4.176 17 C -0.132 4.132 18 C -0.155 4.155 19 O -0.347 6.347 20 Si 0.657 3.343 21 N -0.135 5.135 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.192 0.808 36 H 0.160 0.840 37 H 0.236 0.764 38 H -0.205 1.205 39 H -0.220 1.220 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.836 -4.113 3.427 6.058 hybrid contribution -0.319 -0.230 -0.871 0.956 sum 2.516 -4.343 2.555 5.632 Atomic orbital electron populations 1.20621 0.86273 1.04539 1.04099 1.20510 0.94186 0.85619 1.00107 1.20203 0.94330 0.91707 1.20994 1.17706 0.84588 0.85009 0.75376 1.90706 1.18888 1.84413 1.52245 1.47657 1.09429 1.06013 1.70960 1.22624 0.79622 1.03827 1.02107 1.21462 1.00844 0.81136 0.96035 1.22674 0.96602 0.96215 0.97894 0.87719 1.23036 0.96803 0.95828 1.00061 1.23517 0.85375 0.91159 0.98686 0.88536 1.86481 1.23530 1.63015 1.66036 1.23552 0.97280 0.97643 1.00545 1.22738 0.96038 0.93089 1.05702 1.20746 0.84626 0.95698 1.12124 1.24607 0.92057 1.06938 0.91898 1.86624 1.40407 1.91115 1.16513 0.94668 0.80897 0.72114 0.86590 1.41712 1.05321 1.08693 1.57743 0.89547 0.90087 0.89375 0.91870 0.89348 0.88764 0.88313 0.92040 0.89089 0.90137 0.75798 0.91342 0.92502 0.80816 0.84013 0.76399 1.20506 1.22005 0.73366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.06 10.00 71.24 0.71 0.65 16 2 C 0.12 0.26 7.17 41.78 0.30 0.56 16 3 C -0.26 -1.37 6.06 -19.04 -0.12 -1.48 16 4 C 0.58 5.16 7.65 86.62 0.66 5.83 16 5 O -0.58 -8.65 13.73 -4.11 -0.06 -8.71 16 6 N -0.61 -2.08 2.87 -850.85 -2.44 -4.52 16 7 C 0.06 -0.20 8.73 127.77 1.12 0.92 16 8 C 0.13 0.34 5.22 86.38 0.45 0.79 16 9 C -0.11 -0.13 3.96 -10.27 -0.04 -0.18 16 10 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.12 -0.14 7.47 31.12 0.23 0.09 16 12 C 0.07 0.18 5.21 31.12 0.16 0.35 16 13 H 0.10 -0.11 8.14 -2.38 -0.02 -0.13 16 14 O -0.58 -3.22 13.67 -148.98 -2.04 -5.25 16 15 C -0.15 -0.79 6.93 31.12 0.22 -0.58 16 16 C -0.15 -0.09 8.71 23.62 0.21 0.12 16 17 C -0.02 0.05 6.11 40.98 0.25 0.30 16 18 C -0.04 0.21 2.98 71.24 0.21 0.42 16 19 O -0.54 0.66 12.87 -148.98 -1.92 -1.26 16 20 Si 0.75 -4.65 30.94 68.60 2.12 -2.53 16 21 N -0.53 1.57 5.41 -171.07 -0.93 0.65 16 22 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.08 0.53 6.31 -2.39 -0.02 0.52 16 24 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 25 H 0.06 -0.25 7.64 -2.39 -0.02 -0.27 16 26 H 0.09 -0.62 8.02 -2.38 -0.02 -0.64 16 27 H 0.09 -0.36 4.83 -2.39 -0.01 -0.38 16 28 H 0.10 -0.19 8.07 -2.39 -0.02 -0.20 16 29 H 0.06 0.50 7.11 -2.38 -0.02 0.48 16 30 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.08 0.29 8.10 -2.39 -0.02 0.28 16 32 H 0.39 -0.96 9.12 -74.06 -0.68 -1.64 16 33 H 0.07 0.76 7.77 -2.38 -0.02 0.74 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.17 -0.44 4.84 -2.91 -0.01 -0.45 16 36 H 0.14 -1.03 7.96 -2.39 -0.02 -1.05 16 37 H 0.39 -2.26 8.70 -74.06 -0.64 -2.91 16 38 H -0.28 0.64 7.11 99.48 0.71 1.35 16 39 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 40 H 0.43 -3.56 6.70 -92.71 -0.62 -4.19 16 Total: 0.00 -21.00 323.96 -1.71 -22.71 By element: Atomic # 1 Polarization: -8.07 SS G_CDS: -0.81 Total: -8.88 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 4.36 Total: 7.79 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -3.37 Total: -3.87 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -4.01 Total: -15.22 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 2.12 Total: -2.53 kcal Total: -21.00 -1.71 -22.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.355 kcal (2) G-P(sol) polarization free energy of solvation -21.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds