Wall clock time and date at job start Sat Mar 6 2021 21:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00157 * 2 1 4 4 H 1.09001 * 112.90633 * 18.74996 * 3 2 1 5 5 C 1.53780 * 113.61666 * 149.99716 * 3 2 1 6 6 C 1.53781 * 87.08099 * 89.11575 * 5 3 2 7 7 H 1.08993 * 113.61691 * 270.80585 * 6 5 3 8 8 N 1.46503 * 113.61406 * 139.97896 * 6 5 3 9 9 C 1.34776 * 119.99874 * 155.00528 * 8 6 5 10 10 O 1.21723 * 119.99773 * 359.97438 * 9 8 6 11 11 C 1.46561 * 120.00215 * 180.02562 * 9 8 6 12 12 C 1.40859 * 126.58343 * 180.02562 * 11 9 8 13 13 C 1.40085 * 132.86377 * 0.02562 * 12 11 9 14 14 C 1.36444 * 119.25663 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.30006 * 179.97438 * 14 13 12 16 16 O 1.42891 * 109.47792 * 120.02049 * 15 14 13 17 17 Si 1.86302 * 109.47154 * 240.02263 * 15 14 13 18 18 C 1.40161 * 119.40783 * 0.02562 * 14 13 12 19 19 C 1.35183 * 120.31854 * 359.97438 * 18 14 13 20 20 N 1.36245 * 120.70733 * 0.02562 * 19 18 14 21 21 N 1.40015 * 132.01451 * 179.68582 * 20 19 18 22 22 C 1.30741 * 109.60322 * 179.89622 * 21 20 19 23 23 C 1.53774 * 113.61476 * 247.49800 * 3 2 1 24 24 H 1.09006 * 109.47244 * 299.99933 * 1 2 3 25 25 H 1.08999 * 109.47469 * 60.00145 * 1 2 3 26 26 H 1.09009 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.09004 * 113.61610 * 334.57184 * 5 3 2 28 28 H 1.09004 * 113.69351 * 203.67498 * 5 3 2 29 29 H 0.96996 * 120.00063 * 335.00487 * 8 6 5 30 30 H 1.08006 * 120.37256 * 0.02562 * 13 12 11 31 31 H 1.09001 * 109.47050 * 0.02562 * 15 14 13 32 32 H 0.96705 * 114.00366 * 60.00099 * 16 15 14 33 33 H 1.48506 * 110.00020 * 58.67856 * 17 15 14 34 34 H 1.48499 * 110.00136 * 179.97438 * 17 15 14 35 35 H 1.08002 * 119.84237 * 179.97438 * 18 14 13 36 36 H 1.08003 * 119.65060 * 180.02562 * 19 18 14 37 37 H 1.08004 * 125.62637 * 180.17884 * 22 21 20 38 38 H 1.09001 * 113.61823 * 156.33777 * 23 3 2 39 39 H 1.09001 * 113.61810 * 25.42903 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 0.3227 5 6 3.3755 1.3719 0.7046 6 6 4.0061 1.0329 -0.6564 7 1 4.1097 -0.0372 -0.8353 8 7 5.2363 1.7781 -0.9350 9 6 6.1522 1.2731 -1.7852 10 8 5.9573 0.1977 -2.3211 11 6 7.3832 2.0182 -2.0635 12 6 8.4270 1.6239 -2.9232 13 6 8.6237 0.4938 -3.7273 14 6 9.7660 0.3922 -4.4666 15 6 10.0020 -0.8135 -5.3394 16 8 10.1411 -0.3975 -6.6993 17 14 11.5579 -1.6806 -4.7931 18 6 10.7185 1.4187 -4.4064 19 6 10.5075 2.5002 -3.6233 20 7 9.3701 2.6108 -2.8814 21 7 8.9173 3.6021 -2.0023 22 6 7.7494 3.2627 -1.5226 23 6 2.7534 1.6488 -1.3017 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5170 0.5957 1.4567 28 1 3.6323 2.3665 1.0692 29 1 5.3917 2.6349 -0.5077 30 1 7.8796 -0.2882 -3.7617 31 1 9.1564 -1.4958 -5.2529 32 1 10.8760 0.2126 -6.8508 33 1 11.4383 -2.0903 -3.3707 34 1 11.8015 -2.8718 -5.6455 35 1 11.6253 1.3452 -4.9883 36 1 11.2485 3.2850 -3.5853 37 1 7.1641 3.8416 -0.8234 38 1 2.8390 2.7196 -1.4862 39 1 2.3927 1.0962 -2.1693 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_11618758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:10:19 Heat of formation + Delta-G solvation = 23.721856 kcal Electronic energy + Delta-G solvation = -24193.768646 eV Core-core repulsion = 20492.156197 eV Total energy + Delta-G solvation = -3701.612450 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32254 -41.14177 -39.77942 -39.25572 -37.21884 -37.13634 -34.38653 -33.94839 -32.10247 -30.33802 -27.76785 -27.32784 -26.74295 -25.71121 -24.71042 -23.54248 -22.97548 -21.42482 -20.80730 -19.09721 -18.53655 -18.15200 -17.71385 -17.45430 -17.02373 -16.88939 -16.54762 -16.25746 -16.06670 -15.85143 -15.57833 -15.41076 -15.00754 -14.68343 -14.50119 -14.22486 -14.01221 -13.54971 -13.47887 -13.35864 -13.17532 -13.09567 -12.45868 -12.39149 -12.23515 -12.02752 -11.99247 -11.59201 -11.42889 -10.99892 -10.79825 -10.54256 -10.27260 -10.08832 -8.82016 -5.08643 -0.58819 -0.12137 0.98482 1.04010 1.19143 1.67061 1.95262 2.06104 2.22985 2.44293 2.68784 3.07045 3.22347 3.44960 3.48121 3.58715 3.59463 3.73485 3.82418 3.86415 3.94488 4.08575 4.16737 4.28233 4.37099 4.39921 4.50079 4.52922 4.61191 4.68129 4.76002 4.79683 4.82677 4.95607 5.01102 5.05813 5.09102 5.15207 5.27389 5.52458 5.66445 6.25206 6.27400 6.58857 6.76299 7.26775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.062 3.938 4 H 0.105 0.895 5 C -0.133 4.133 6 C 0.124 3.876 7 H 0.081 0.919 8 N -0.702 5.702 9 C 0.595 3.405 10 O -0.600 6.600 11 C -0.349 4.349 12 C 0.150 3.850 13 C -0.137 4.137 14 C -0.053 4.053 15 C -0.078 4.078 16 O -0.546 6.546 17 Si 0.819 3.181 18 C -0.146 4.146 19 C 0.116 3.884 20 N -0.273 5.273 21 N -0.336 5.336 22 C 0.133 3.867 23 C -0.168 4.168 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.416 0.584 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.401 0.599 33 H -0.304 1.304 34 H -0.289 1.289 35 H 0.224 0.776 36 H 0.216 0.784 37 H 0.236 0.764 38 H 0.114 0.886 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 6.543 0.915 7.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.004 3.996 4 H 0.123 0.877 5 C -0.171 4.171 6 C 0.018 3.982 7 H 0.100 0.900 8 N -0.353 5.353 9 C 0.385 3.615 10 O -0.482 6.482 11 C -0.363 4.363 12 C 0.029 3.971 13 C -0.157 4.157 14 C -0.059 4.059 15 C -0.186 4.186 16 O -0.355 6.355 17 Si 0.723 3.277 18 C -0.166 4.166 19 C -0.010 4.010 20 N -0.037 5.037 21 N -0.157 5.157 22 C -0.047 4.047 23 C -0.207 4.207 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.253 0.747 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.253 0.747 33 H -0.232 1.232 34 H -0.216 1.216 35 H 0.240 0.760 36 H 0.232 0.768 37 H 0.252 0.748 38 H 0.132 0.868 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.771 5.542 0.873 7.365 hybrid contribution -1.935 -0.498 0.233 2.011 sum 2.837 5.044 1.106 5.892 Atomic orbital electron populations 1.22978 0.79354 1.03659 1.01056 1.87871 1.21542 1.27755 1.94666 1.23000 0.94948 0.85506 0.96148 0.87678 1.23632 0.93225 1.04647 0.95610 1.22401 0.82191 0.96427 0.97136 0.90042 1.45541 1.19220 1.24392 1.46165 1.17185 0.82234 0.83888 0.78154 1.90753 1.79657 1.24244 1.53593 1.19711 1.00150 1.02053 1.14414 1.19464 0.90427 0.90600 0.96626 1.20629 0.99619 0.97087 0.98402 1.20782 0.92977 0.97245 0.94866 1.25352 1.11818 0.96904 0.84542 1.86584 1.57675 1.68828 1.22422 0.93876 0.77947 0.80724 0.75166 1.21366 1.02427 0.91381 1.01427 1.22506 0.86737 1.01277 0.90431 1.46386 1.14260 1.13926 1.29089 1.77548 1.15988 1.10750 1.11384 1.24594 0.91898 0.92705 0.95549 1.24007 0.95965 1.02595 0.98105 0.92352 0.93313 0.89182 0.90505 0.85142 0.74652 0.84810 0.87917 0.74747 1.23177 1.21623 0.75997 0.76759 0.74785 0.86792 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -2.28 10.63 -148.98 -1.58 -3.86 16 3 C 0.06 0.01 4.37 31.12 0.14 0.15 16 4 H 0.11 -0.50 7.87 -2.39 -0.02 -0.51 16 5 C -0.13 0.22 7.66 31.12 0.24 0.46 16 6 C 0.12 0.56 4.18 45.52 0.19 0.75 16 7 H 0.08 1.02 7.46 -2.39 -0.02 1.01 16 8 N -0.70 -2.01 5.35 -444.08 -2.37 -4.39 16 9 C 0.59 6.63 7.78 86.41 0.67 7.30 16 10 O -0.60 -12.08 15.30 -4.42 -0.07 -12.14 16 11 C -0.35 -2.90 6.17 -19.90 -0.12 -3.02 16 12 C 0.15 1.33 6.76 39.49 0.27 1.60 16 13 C -0.14 -1.08 9.35 22.30 0.21 -0.87 16 14 C -0.05 0.02 4.53 -19.82 -0.09 -0.07 16 15 C -0.08 0.13 2.84 71.24 0.20 0.33 16 16 O -0.55 1.46 12.87 -148.98 -1.92 -0.46 16 17 Si 0.82 -3.68 31.96 68.60 2.19 -1.49 16 18 C -0.15 1.23 8.38 22.03 0.18 1.41 16 19 C 0.12 -0.57 11.17 83.30 0.93 0.36 16 20 N -0.27 -1.15 3.86 -187.28 -0.72 -1.88 16 21 N -0.34 -1.71 12.57 -56.62 -0.71 -2.42 16 22 C 0.13 0.27 11.44 85.42 0.98 1.25 16 23 C -0.17 -0.32 7.71 31.12 0.24 -0.08 16 24 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 25 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.09 -0.10 8.14 -2.38 -0.02 -0.12 16 27 H 0.08 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.13 -1.08 8.12 -2.38 -0.02 -1.10 16 29 H 0.42 -2.20 7.65 -92.71 -0.71 -2.90 16 30 H 0.13 1.65 7.01 -2.91 -0.02 1.63 16 31 H 0.10 0.23 7.71 -2.39 -0.02 0.21 16 32 H 0.40 -5.64 8.09 -74.05 -0.60 -6.24 16 33 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 34 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 35 H 0.22 -4.55 7.31 -2.91 -0.02 -4.58 16 36 H 0.22 -2.75 8.06 -2.91 -0.02 -2.77 16 37 H 0.24 -1.92 7.46 -2.91 -0.02 -1.94 16 38 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: 0.00 -33.79 335.53 -0.09 -33.88 By element: Atomic # 1 Polarization: -17.87 SS G_CDS: -0.17 Total: -18.04 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.26 Total: 10.80 kcal Atomic # 7 Polarization: -4.87 SS G_CDS: -3.81 Total: -8.68 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -3.57 Total: -16.47 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.19 Total: -1.49 kcal Total: -33.79 -0.09 -33.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_11618758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.601 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds