Wall clock time and date at job start Sat Mar 6 2021 21:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99958 * 2 1 4 4 H 1.08999 * 112.84968 * 341.20044 * 3 2 1 5 5 C 1.54051 * 113.69380 * 112.47073 * 3 2 1 6 6 C 1.53776 * 86.98539 * 139.99059 * 5 3 2 7 7 H 1.09001 * 113.61693 * 219.98084 * 6 5 3 8 8 N 1.46498 * 113.61773 * 89.16262 * 6 5 3 9 9 C 1.34777 * 120.00097 * 105.86069 * 8 6 5 10 10 O 1.21691 * 119.99922 * 0.02562 * 9 8 6 11 11 C 1.46679 * 119.99984 * 180.02562 * 9 8 6 12 12 C 1.37872 * 126.23507 * 180.33570 * 11 9 8 13 13 C 1.50701 * 126.45617 * 359.94931 * 12 11 9 14 14 C 1.39830 * 107.08525 * 180.11512 * 12 11 9 15 15 C 1.50707 * 126.06892 * 179.83519 * 14 12 11 16 16 O 1.42903 * 109.46442 * 29.71720 * 15 14 12 17 17 Si 1.86293 * 109.47256 * 149.71286 * 15 14 12 18 18 C 1.35446 * 107.86716 * 359.57655 * 14 12 11 19 19 C 1.50706 * 125.56738 * 180.24318 * 18 14 12 20 20 N 1.35533 * 108.87409 * 0.25863 * 18 14 12 21 21 C 1.53779 * 113.61505 * 210.00432 * 3 2 1 22 22 H 1.08991 * 109.47117 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46685 * 299.99947 * 1 2 3 24 24 H 1.08995 * 109.47066 * 59.99296 * 1 2 3 25 25 H 1.08998 * 113.61426 * 25.48362 * 5 3 2 26 26 H 1.09007 * 113.69513 * 254.50784 * 5 3 2 27 27 H 0.96997 * 120.00004 * 285.86593 * 8 6 5 28 28 H 1.09005 * 109.47029 * 270.19703 * 13 12 11 29 29 H 1.08997 * 109.46991 * 30.19354 * 13 12 11 30 30 H 1.08997 * 109.47382 * 150.20054 * 13 12 11 31 31 H 1.08999 * 109.47345 * 269.71790 * 15 14 12 32 32 H 0.96700 * 114.00311 * 60.00230 * 16 15 14 33 33 H 1.48506 * 109.99973 * 180.02562 * 17 15 14 34 34 H 1.48493 * 110.00375 * 301.32185 * 17 15 14 35 35 H 1.08997 * 109.47037 * 89.99490 * 19 18 14 36 36 H 1.08992 * 109.47324 * 209.99645 * 19 18 14 37 37 H 1.09004 * 109.46520 * 329.99867 * 19 18 14 38 38 H 0.96997 * 125.68101 * 179.97438 * 20 18 14 39 39 H 1.08996 * 113.61588 * 105.38854 * 21 3 2 40 40 H 1.08999 * 113.61389 * 334.48536 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7546 1.6517 1.3035 6 6 3.8220 2.3199 0.4210 7 1 4.8425 2.1438 0.7611 8 7 3.5517 3.7321 0.1406 9 6 4.2708 4.6912 0.7567 10 8 5.1450 4.3840 1.5456 11 6 3.9998 6.1052 0.4764 12 6 4.6573 7.1855 1.0255 13 6 5.7849 7.1345 2.0240 14 6 4.0781 8.3374 0.4844 15 6 4.4711 9.7585 0.7961 16 8 5.8595 9.8061 1.1308 17 14 4.1544 10.8314 -0.6936 18 6 3.1049 7.9492 -0.3741 19 6 2.2290 8.8722 -1.1816 20 7 3.0472 6.5952 -0.3882 21 6 3.3755 1.3720 -0.7046 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 3.1191 0.7778 1.8436 26 1 2.2161 2.3514 1.9429 27 1 2.8551 3.9770 -0.4884 28 1 5.3762 7.1416 3.0344 29 1 6.3634 6.2232 1.8725 30 1 6.4308 8.0018 1.8873 31 1 3.8817 10.1223 1.6378 32 1 6.4449 9.4962 0.4263 33 1 4.5385 12.2354 -0.3993 34 1 4.9278 10.3270 -1.8566 35 1 2.7023 9.0739 -2.1425 36 1 1.2595 8.4020 -1.3456 37 1 2.0919 9.8085 -0.6405 38 1 2.4361 6.0605 -0.9187 39 1 3.3381 1.8459 -1.6854 40 1 3.9094 0.4217 -0.7127 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_12297754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:10:22 Heat of formation + Delta-G solvation = -43.087579 kcal Electronic energy + Delta-G solvation = -22463.364032 eV Core-core repulsion = 19053.421221 eV Total energy + Delta-G solvation = -3409.942811 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.70871 -41.17714 -39.60545 -37.92184 -37.36325 -34.38321 -33.66493 -32.80746 -29.31112 -28.11576 -27.38115 -26.81698 -26.42349 -24.90396 -22.78835 -20.91260 -20.78691 -20.28607 -19.42830 -17.96643 -17.63167 -16.88720 -16.78564 -16.72270 -16.37522 -16.17455 -15.86602 -15.69369 -15.04289 -14.82911 -14.38268 -14.18867 -14.02852 -13.93603 -13.75304 -13.62455 -13.52339 -13.37046 -13.27070 -13.11506 -12.56241 -12.32991 -12.22353 -12.00701 -11.82373 -11.59803 -11.25181 -10.54260 -10.51279 -10.29570 -9.55916 -8.98780 -4.76743 0.32115 1.22750 1.66578 1.70347 1.85483 2.05973 2.10632 2.21188 2.83347 3.36599 3.41848 3.47701 3.72924 3.80181 3.83394 3.88599 3.96844 4.20246 4.34394 4.45230 4.51194 4.52466 4.65914 4.66467 4.69053 4.70613 4.79614 4.80513 4.82524 4.86037 4.88272 4.89178 4.95017 5.12589 5.23073 5.31776 5.39224 5.68445 5.81330 6.23857 6.33627 6.49785 6.58703 7.03803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.064 3.936 4 H 0.108 0.892 5 C -0.168 4.168 6 C 0.120 3.880 7 H 0.091 0.909 8 N -0.700 5.700 9 C 0.591 3.409 10 O -0.566 6.566 11 C -0.083 4.083 12 C -0.068 4.068 13 C -0.094 4.094 14 C -0.233 4.233 15 C -0.052 4.052 16 O -0.549 6.549 17 Si 0.761 3.239 18 C 0.089 3.911 19 C -0.111 4.111 20 N -0.517 5.517 21 C -0.132 4.132 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.410 0.590 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.381 0.619 33 H -0.305 1.305 34 H -0.291 1.291 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.434 0.566 39 H 0.097 0.903 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 1.135 -6.875 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.006 3.994 4 H 0.125 0.875 5 C -0.207 4.207 6 C 0.015 3.985 7 H 0.109 0.891 8 N -0.351 5.351 9 C 0.380 3.620 10 O -0.445 6.445 11 C -0.195 4.195 12 C -0.077 4.077 13 C -0.151 4.151 14 C -0.239 4.239 15 C -0.161 4.161 16 O -0.357 6.357 17 Si 0.666 3.334 18 C -0.031 4.031 19 C -0.166 4.166 20 N -0.115 5.115 21 C -0.170 4.170 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.247 0.753 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.230 0.770 33 H -0.234 1.234 34 H -0.218 1.218 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.275 0.725 39 H 0.115 0.885 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.431 1.297 -6.435 10.685 hybrid contribution 0.804 -0.713 0.118 1.081 sum -7.627 0.584 -6.317 9.920 Atomic orbital electron populations 1.22962 0.79783 1.03710 1.00847 1.87933 1.21254 1.28089 1.94602 1.23957 0.94181 0.85518 0.95728 0.87476 1.24009 0.97920 1.00869 0.97915 1.21570 0.99615 0.79629 0.97714 0.89059 1.45364 1.38640 1.05024 1.46107 1.17214 0.80872 0.83926 0.79947 1.90826 1.34055 1.82660 1.36928 1.19844 1.01592 0.92185 1.05879 1.19928 0.98089 0.91219 0.98466 1.20427 0.95863 1.02696 0.96113 1.19657 1.03409 0.95488 1.05391 1.24656 0.83562 0.96534 1.11323 1.86515 1.16562 1.87775 1.44799 0.94468 0.91780 0.73958 0.73164 1.20713 0.99306 0.83391 0.99722 1.20722 0.99311 0.96935 0.99609 1.41676 1.29023 1.06451 1.34380 1.23545 0.95305 0.99892 0.98244 0.89149 0.93533 0.92504 0.88963 0.91262 0.75294 0.92835 0.92540 0.89676 0.86883 0.77005 1.23415 1.21793 0.87939 0.86351 0.86472 0.72501 0.88501 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.40 -0.70 10.72 -148.98 -1.60 -2.30 16 3 C 0.06 -0.18 4.20 31.21 0.13 -0.05 16 4 H 0.11 -0.83 7.87 -2.39 -0.02 -0.85 16 5 C -0.17 -0.06 7.73 31.21 0.24 0.18 16 6 C 0.12 0.03 4.30 45.52 0.20 0.22 16 7 H 0.09 0.47 7.50 -2.39 -0.02 0.45 16 8 N -0.70 1.10 5.26 -444.01 -2.34 -1.23 16 9 C 0.59 3.80 7.79 86.45 0.67 4.47 16 10 O -0.57 -8.73 14.43 -4.32 -0.06 -8.79 16 11 C -0.08 -0.31 7.06 40.35 0.28 -0.02 16 12 C -0.07 -0.48 6.15 -19.57 -0.12 -0.60 16 13 C -0.09 -0.94 9.50 71.24 0.68 -0.26 16 14 C -0.23 -0.38 5.38 -20.12 -0.11 -0.49 16 15 C -0.05 -0.05 3.03 71.24 0.22 0.16 16 16 O -0.55 -2.84 10.19 -148.98 -1.52 -4.36 16 17 Si 0.76 -2.12 26.76 68.60 1.84 -0.29 16 18 C 0.09 -0.45 6.84 41.34 0.28 -0.17 16 19 C -0.11 1.55 8.21 71.24 0.59 2.14 16 20 N -0.52 2.82 5.99 -171.92 -1.03 1.79 16 21 C -0.13 0.46 7.65 31.12 0.24 0.70 16 22 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 24 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 27 H 0.41 -3.75 7.83 -92.71 -0.73 -4.47 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.75 6.50 -2.39 -0.02 0.74 16 30 H 0.08 0.70 5.46 -2.39 -0.01 0.69 16 31 H 0.11 0.00 7.96 -2.39 -0.02 -0.01 16 32 H 0.38 0.30 8.47 -74.06 -0.63 -0.33 16 33 H -0.31 -1.72 7.11 99.48 0.71 -1.01 16 34 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 35 H 0.10 -1.58 7.13 -2.39 -0.02 -1.60 16 36 H 0.12 -2.26 8.14 -2.39 -0.02 -2.28 16 37 H 0.12 -1.92 5.18 -2.38 -0.01 -1.93 16 38 H 0.43 -5.86 8.19 -92.71 -0.76 -6.62 16 39 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -24.81 321.62 -1.17 -25.98 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -0.99 Total: -18.25 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.53 Total: 7.45 kcal Atomic # 7 Polarization: 3.93 SS G_CDS: -3.37 Total: 0.56 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -3.18 Total: -15.45 kcal Atomic # 14 Polarization: -2.12 SS G_CDS: 1.84 Total: -0.29 kcal Total: -24.81 -1.17 -25.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_12297754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.112 kcal (2) G-P(sol) polarization free energy of solvation -24.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds