Wall clock time and date at job start Sat Mar 6 2021 21:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35649 * 116.99920 * 2 1 4 4 C 1.40140 * 120.14770 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.19474 * 359.96035 * 4 3 2 6 6 O 1.21594 * 119.99751 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00236 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00014 * 179.97438 * 7 5 4 9 9 H 1.09004 * 112.85074 * 336.20143 * 8 7 5 10 10 C 1.53782 * 113.61142 * 107.50467 * 8 7 5 11 11 C 1.53962 * 87.11063 * 89.18830 * 10 8 7 12 12 H 1.08993 * 113.61598 * 270.84305 * 11 10 8 13 13 O 1.42902 * 113.66723 * 139.88843 * 11 10 8 14 14 C 1.42899 * 113.99903 * 112.55150 * 13 11 10 15 15 C 1.53781 * 113.61619 * 205.00312 * 8 7 5 16 16 C 1.39712 * 119.61662 * 180.22880 * 4 3 2 17 17 C 1.37783 * 119.90407 * 359.54303 * 16 4 3 18 18 C 1.50701 * 119.84819 * 180.18435 * 17 16 4 19 19 O 1.42897 * 109.47163 * 300.25488 * 18 17 16 20 20 Si 1.86301 * 109.47406 * 180.25517 * 18 17 16 21 21 C 1.38545 * 120.30591 * 0.44069 * 17 16 4 22 22 C 1.38060 * 120.38844 * 359.79085 * 21 17 16 23 23 H 1.09001 * 109.46639 * 299.99854 * 1 2 3 24 24 H 1.08998 * 109.46770 * 59.99477 * 1 2 3 25 25 H 1.09001 * 109.47343 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00013 * 0.02562 * 7 5 4 27 27 H 1.08997 * 113.61668 * 203.66381 * 10 8 7 28 28 H 1.08994 * 113.61387 * 334.57115 * 10 8 7 29 29 H 1.09001 * 109.46682 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.46809 * 299.99633 * 14 13 11 31 31 H 1.08997 * 109.47166 * 60.00208 * 14 13 11 32 32 H 1.09002 * 113.61445 * 25.43587 * 15 8 7 33 33 H 1.09002 * 113.61408 * 156.25317 * 15 8 7 34 34 H 1.08000 * 120.04482 * 179.72483 * 16 4 3 35 35 H 1.09002 * 109.47432 * 60.25549 * 18 17 16 36 36 H 0.96702 * 114.00158 * 299.99887 * 19 18 17 37 37 H 1.48500 * 110.00219 * 180.02562 * 20 18 17 38 38 H 1.48498 * 109.99820 * 301.32165 * 20 18 17 39 39 H 1.07998 * 119.80693 * 179.76375 * 21 17 16 40 40 H 1.07995 * 119.96069 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4442 1.2856 0.0005 5 6 4.2551 0.0531 0.0020 6 8 3.7095 -1.0335 0.0032 7 7 5.6005 0.1317 0.0020 8 6 6.4057 -1.0922 0.0040 9 1 5.8705 -1.9504 0.4107 10 6 7.0984 -1.3760 -1.3393 11 6 8.2796 -0.5369 -0.8186 12 1 8.1938 0.5257 -1.0453 13 8 9.5592 -1.0762 -1.1562 14 6 10.3011 -0.2775 -2.0802 15 6 7.8110 -0.9041 0.5994 16 6 4.0669 2.5363 0.0054 17 6 3.3039 3.6836 0.0001 18 6 3.9769 5.0319 0.0011 19 8 4.7915 5.1568 1.1684 20 14 2.6827 6.3720 0.0008 21 6 1.9207 3.6033 -0.0009 22 6 1.2925 2.3739 -0.0008 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 6.0357 0.9986 0.0014 27 1 7.3443 -2.4271 -1.4904 28 1 6.5900 -0.9319 -2.1951 29 1 11.2596 -0.7545 -2.2846 30 1 9.7385 -0.1791 -3.0086 31 1 10.4712 0.7102 -1.6519 32 1 7.8779 -0.0791 1.3087 33 1 8.2511 -1.8260 0.9797 34 1 5.1447 2.6037 0.0103 35 1 4.5995 5.1280 -0.8884 36 1 4.3025 5.0814 1.9993 37 1 3.3336 7.7068 0.0012 38 1 1.8089 6.2340 -1.1919 39 1 1.3305 4.5077 -0.0012 40 1 0.2139 2.3194 -0.0012 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_12496546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:10:59 Heat of formation + Delta-G solvation = -82.834458 kcal Electronic energy + Delta-G solvation = -23880.073752 eV Core-core repulsion = 20242.462584 eV Total energy + Delta-G solvation = -3637.611167 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90086 -40.93015 -39.50954 -39.19236 -37.30980 -37.09962 -34.28462 -32.37382 -31.78492 -28.56235 -27.83390 -26.80245 -26.15378 -25.85670 -24.59171 -22.72804 -21.63781 -20.66990 -19.48173 -18.51269 -18.24801 -17.69623 -17.22302 -16.89168 -16.66497 -16.56014 -16.18592 -16.11151 -15.85830 -15.82810 -15.66778 -14.86044 -14.56204 -14.51035 -14.14009 -13.73261 -13.61489 -13.53742 -13.43542 -13.29803 -13.11177 -12.44400 -12.20087 -12.09973 -12.05566 -11.98930 -11.79395 -11.55379 -11.07521 -10.49875 -10.40134 -10.31528 -10.07688 -9.29820 -4.97427 -0.29067 0.20334 1.34028 1.64714 1.73065 1.96974 2.01021 2.25723 2.65269 2.84197 3.39878 3.45826 3.51015 3.55397 3.66095 3.75080 3.80210 3.90224 3.96654 4.13932 4.29474 4.35795 4.36381 4.38876 4.46962 4.52283 4.55698 4.65782 4.71264 4.71558 4.76242 4.82305 4.89477 4.90136 4.91564 4.97507 5.09958 5.26151 5.45430 5.55117 6.24353 6.28008 6.45559 6.80938 7.15446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.172 3.828 4 C -0.197 4.197 5 C 0.560 3.440 6 O -0.562 6.562 7 N -0.700 5.700 8 C 0.120 3.880 9 H 0.092 0.908 10 C -0.167 4.167 11 C 0.063 3.937 12 H 0.104 0.896 13 O -0.398 6.398 14 C 0.023 3.977 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.167 4.167 18 C -0.064 4.064 19 O -0.554 6.554 20 Si 0.770 3.230 21 C -0.042 4.042 22 C -0.211 4.211 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.412 0.588 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.396 0.604 37 H -0.302 1.302 38 H -0.283 1.283 39 H 0.158 0.842 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 5.793 1.548 6.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.349 3.651 6 O -0.441 6.441 7 N -0.353 5.353 8 C 0.014 3.986 9 H 0.110 0.890 10 C -0.206 4.206 11 C 0.005 3.995 12 H 0.122 0.878 13 O -0.317 6.317 14 C -0.073 4.073 15 C -0.171 4.171 16 C -0.035 4.035 17 C -0.168 4.168 18 C -0.174 4.174 19 O -0.362 6.362 20 Si 0.677 3.323 21 C -0.059 4.059 22 C -0.230 4.230 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.125 0.875 26 H 0.250 0.750 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.168 0.832 35 H 0.130 0.870 36 H 0.246 0.754 37 H -0.230 1.230 38 H -0.210 1.210 39 H 0.175 0.825 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.208 5.377 0.770 5.863 hybrid contribution 0.304 0.052 -0.711 0.775 sum -1.904 5.429 0.060 5.753 Atomic orbital electron populations 1.23456 0.76459 1.05487 1.02913 1.86338 1.23272 1.26436 1.86528 1.19414 0.91297 0.85591 0.91374 1.19368 0.91137 0.93815 1.15767 1.18325 0.82433 0.88764 0.75605 1.90817 1.72395 1.30368 1.50532 1.45472 1.05077 1.09614 1.75171 1.21554 0.91276 0.88271 0.97450 0.89025 1.23991 0.96758 1.02221 0.97645 1.23925 0.82140 0.97614 0.95844 0.87823 1.87924 1.30055 1.49677 1.64078 1.22958 0.96542 0.95744 0.92065 1.23554 0.92568 1.04503 0.96434 1.21086 1.00714 0.89144 0.92540 1.20252 0.93827 0.95990 1.06692 1.25040 1.02023 0.98925 0.91397 1.86469 1.38104 1.95313 1.16285 0.93821 0.77950 0.74037 0.86517 1.21292 0.93718 0.97895 0.93037 1.21480 1.01810 0.90861 1.08831 0.90538 0.90984 0.87499 0.75029 0.88809 0.91336 0.88987 0.93568 0.92722 0.88698 0.87766 0.83241 0.86990 0.75405 1.23033 1.21021 0.82521 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.66 8.57 -68.72 -0.59 -3.24 16 3 C 0.17 0.86 6.70 22.84 0.15 1.01 16 4 C -0.20 -0.96 5.89 -20.01 -0.12 -1.08 16 5 C 0.56 5.07 7.76 86.70 0.67 5.74 16 6 O -0.56 -10.10 14.76 16.91 0.25 -9.85 16 7 N -0.70 -1.50 5.21 -443.20 -2.31 -3.82 16 8 C 0.12 0.37 4.32 45.52 0.20 0.56 16 9 H 0.09 0.69 7.46 -2.38 -0.02 0.68 16 10 C -0.17 -0.46 7.72 31.18 0.24 -0.21 16 11 C 0.06 0.01 4.20 31.18 0.13 0.14 16 12 H 0.10 -0.39 7.87 -2.39 -0.02 -0.41 16 13 O -0.40 -1.60 10.72 -148.98 -1.60 -3.20 16 14 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 15 C -0.13 0.09 7.65 31.12 0.24 0.33 16 16 C -0.02 0.02 9.08 22.52 0.20 0.22 16 17 C -0.17 0.59 5.39 -19.90 -0.11 0.48 16 18 C -0.06 0.31 2.82 71.24 0.20 0.51 16 19 O -0.55 2.45 12.76 -148.98 -1.90 0.55 16 20 Si 0.77 -4.42 29.77 68.60 2.04 -2.38 16 21 C -0.04 0.19 8.66 22.30 0.19 0.39 16 22 C -0.21 0.41 9.03 22.34 0.20 0.61 16 23 H 0.08 -0.42 7.66 -2.39 -0.02 -0.44 16 24 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 25 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.41 -1.61 6.73 -92.71 -0.62 -2.23 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 29 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.15 -0.80 6.40 -2.91 -0.02 -0.82 16 35 H 0.11 -0.49 7.96 -2.39 -0.02 -0.51 16 36 H 0.40 -4.69 8.70 -74.06 -0.64 -5.33 16 37 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 38 H -0.28 0.36 7.11 99.48 0.71 1.07 16 39 H 0.16 -1.54 4.85 -2.91 -0.01 -1.55 16 40 H 0.16 -1.15 6.30 -2.91 -0.02 -1.17 16 Total: 0.00 -23.03 332.61 0.29 -22.74 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.15 Total: -11.81 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.55 Total: 11.01 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -2.31 Total: -3.82 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -3.84 Total: -15.74 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.04 Total: -2.38 kcal Total: -23.03 0.29 -22.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_12496546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.092 kcal (2) G-P(sol) polarization free energy of solvation -23.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds